Rw6G013130

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0019436
Physical Location & Seq
Forward (+)
24165240 .. 24167232
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013130.1

Sequence Viewer

Length: 1086 bp
ATGATCACAGCTCCAAAGATATCAAAAATGGACAGAAGGAACTCCACACCTGATGTTTCGCCGGAATGTGCGGGTGATTCCCAGAGTGCAAACTTCATCTCCAATAACCATACCCAATCGGTCTTGACAATGCATACTACCAGCACAGACCAACACATACTCGTCAGGCTTGGCTCTTTTTTTGATTCGCTACTCGCTGGTAAGGCAGTTATAGACACAGTATGCTCGGAATATGTGCAACTATCGAGTATGAAGAATGACAAACTCAAACATGTTTTCCTCAAGGATTACAATGAATATAGCTCCAATATGCTGAGTTTTTTTTCTGAATTGGATGCATTCATAAAATTAGCTCGTGAAAAGCATTCATTTATTGAATATAGGGTTAACCGTTGTAGAAATACGGAATCTGATGTGGGATTGCAGGACTTGATGGGGACTTCAGAAACATTGAAGCGTATCCAGGCTTCTTTTGATGAGACTTGTAACAGACTAGTGCTTGAAAAGGTTCAGCCTTTGTTGGATCAACAGGACAAATGGTTTTGTACTGTTAGTCTCGAAATAGAGAAACTTGGTCAGAAAGAAGCTTCTACCCGTTGTTTTAACCAGGCTAACGAAATACTATCAATGGCGATTTGTTTTGGTAAGGTCATTTCCAAGATCTTTACAGCATATGGAAGCTCTAGAGTTATCGATTCATTTTTTGCTGTTATCAAAGAAGAAGCGGCTTCTCTATGTCATTTGATATCCAGAGTTTTTAAAGCATGTGCAGGGGTTAAACTTAAAGATAAGGAGATTTATAACTCATACATCCAAAAAGAAACGATGGCTGGTGTTATGGAATTGACCGAATTTAAGGTTTTCATTAATAACATTGGGACTGCGTTTGGTTCAGTTGTTGTGAATGATGAGTATTTAACTCAAGGTTATGTCGATTTCGCGATGACAAATTTGGAAAGTAAGCTGAACAATTATTTGGAGACAGTTAAGGAATTCGAGGTCAAAATAGCTGCATGCCGGGCCAAAACTACGAAAGCAAGGGAAGACATTAAGACCTCTAGTTTGAAGTATAAAATCGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

361

Amino Acids

40.79

Weight (kDa)

6.62

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019436)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267181
rosa_laevigata RLG00000014021
rosa_multiflora Rmu_ssc0000388.1_g000046
rosa_samantha Rh6AG152200 Rh6BG152400 Rh6CG148100 Rh6DG136600
rosa_wichuraiana Rw6G013130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AccII CGCG 1 cut(s) 941
AciI CCGC 2 cut(s) 71, 725
AclWI GGATC 1 cut(s) 531
AcsI RAATTY 3 cut(s) 851, 949, 992
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 547
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 377, 454, 503, 1066
AhlI ACTAGT 1 cut(s) 493
AjnI CCWGG 2 cut(s) 462, 606
AjuI GAANNNNNNNTTGG 2 cut(s) 959, 991
AluBI AGCT 7 cut(s) 11, 303, 353, 587, 681, 964, 1010
AluI AGCT 7 cut(s) 11, 303, 353, 587, 681, 964, 1010
Alw26I GTCTC 3 cut(s) 473, 560, 974
AlwI GGATC 1 cut(s) 531
AoxI GGCC 1 cut(s) 1020
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 3 cut(s) 851, 949, 992
ArsI GACNNNNNNTTYG 2 cut(s) 1045, 1077
AseI ATTAAT 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 1020
AsuC2I CCSGG 1 cut(s) 1019
AsuHPI GGTGA 1 cut(s) 86
BarI GAAGNNNNNNTAC 2 cut(s) 451, 483
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 1050
BbvI GCAGC 1 cut(s) 997
BccI CCATC 2 cut(s) 427, 820
BciT130I CCWGG 2 cut(s) 464, 608
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 3 cut(s) 473, 560, 974
BcuI ACTAGT 1 cut(s) 493
BfaI CTAG 3 cut(s) 494, 684, 1059
BfuI GTATCC 1 cut(s) 470
BglII AGATCT 1 cut(s) 660
BisI GCNGC 2 cut(s) 726, 1011
BlsI GCNGC 2 cut(s) 727, 1012
Bme1390I CCNGG 3 cut(s) 464, 608, 1019
BmgT120I GGNCC 1 cut(s) 1020
BmrFI CCNGG 3 cut(s) 464, 608, 1019
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 266, 906
BpuMI CCSGG 1 cut(s) 1019
Bsa29I ATCGAT 2 cut(s) 693, 1077
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
BseBI CCWGG 2 cut(s) 464, 608
BseCI ATCGAT 2 cut(s) 693, 1077
BseGI GGATG 2 cut(s) 340, 810
BseMII CTCAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 997
BsgI GTGCAG 1 cut(s) 789
Bsh1236I CGCG 1 cut(s) 941
BshFI GGCC 1 cut(s) 1022
BshVI ATCGAT 2 cut(s) 693, 1077
BsiSI CCGG 2 cut(s) 62, 1018
BslFI GGGAC 2 cut(s) 451, 892
BsmAI GTCTC 3 cut(s) 473, 560, 974
BsmFI GGGAC 2 cut(s) 451, 892
BsmI GAATGC 2 cut(s) 338, 364
BsnI GGCC 1 cut(s) 1022
Bsp143I GATC 3 cut(s) 3, 523, 660
Bsp68I TCGCGA 1 cut(s) 941
BspACI CCGC 2 cut(s) 71, 725
BspANI GGCC 1 cut(s) 1022
BspCNI CTCAG 1 cut(s) 306
BspDI ATCGAT 2 cut(s) 693, 1077
BspFNI CGCG 1 cut(s) 941
BspPI GGATC 1 cut(s) 531
BssMI GATC 3 cut(s) 3, 523, 660
BssSI CACGAG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 464, 608
Bst4CI ACNGT 4 cut(s) 220, 392, 550, 985
BstC8I GCNNGC 1 cut(s) 1015
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 340, 810
BstFNI CGCG 1 cut(s) 941
BstKTI GATC 3 cut(s) 6, 526, 663
BstMAI GTCTC 3 cut(s) 473, 560, 974
BstMBI GATC 3 cut(s) 3, 523, 660
BstMWI GCNNNNNNNGC 2 cut(s) 203, 1019
BstNI CCWGG 2 cut(s) 464, 608
BstNSI RCATGY 3 cut(s) 275, 768, 1017
BstSCI CCNGG 3 cut(s) 462, 606, 1017
BstUI CGCG 1 cut(s) 941
BstV1I GCAGC 1 cut(s) 997
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 1 cut(s) 660
BstYI RGATCY 1 cut(s) 660
Bsu15I ATCGAT 2 cut(s) 693, 1077
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 1022
BsuTUI ATCGAT 2 cut(s) 693, 1077
BtgZI GCGATG 1 cut(s) 956
BtsCI GGATG 2 cut(s) 340, 810
BtuMI TCGCGA 1 cut(s) 941
Cac8I GCNNGC 1 cut(s) 1015
Cfr13I GGNCC 1 cut(s) 1020
ClaI ATCGAT 2 cut(s) 693, 1077
Csp6I GTAC 1 cut(s) 546
CviAII CATG 3 cut(s) 272, 765, 1014
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 1 cut(s) 314
DpnI GATC 3 cut(s) 5, 525, 662
DpnII GATC 3 cut(s) 3, 523, 660
DraI TTTAAA 1 cut(s) 760
Eco32I GATATC 2 cut(s) 21, 747
Eco57I CTGAAG 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 992
EcoRII CCWGG 2 cut(s) 462, 606
EcoRV GATATC 2 cut(s) 21, 747
EcoT22I ATGCAT 2 cut(s) 135, 340
FaeI CATG 3 cut(s) 275, 768, 1017
FaqI GGGAC 2 cut(s) 451, 892
FatI CATG 3 cut(s) 271, 764, 1013
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 726, 1011
FokI GGATG 2 cut(s) 347, 797
Fsp4HI GCNGC 2 cut(s) 726, 1011
FspBI CTAG 3 cut(s) 494, 684, 1059
GluI GCNGC 2 cut(s) 726, 1011
HaeIII GGCC 1 cut(s) 1022
HapII CCGG 2 cut(s) 62, 1018
Hin1II CATG 3 cut(s) 275, 768, 1017
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 4 cut(s) 77, 185, 407, 695
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 2 cut(s) 62, 1018
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 5 cut(s) 229, 328, 412, 445, 579
Hpy188III TCNNGA 6 cut(s) 124, 356, 557, 684, 750, 940
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 4 cut(s) 220, 392, 550, 985
HpyCH4V TGCA 7 cut(s) 89, 133, 238, 338, 424, 770, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 1019
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 3 cut(s) 275, 768, 1017
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 3 cut(s) 3, 523, 660
LmnI GCTCC 2 cut(s) 16, 308
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 1 cut(s) 325
MaeI CTAG 3 cut(s) 494, 684, 1059
MaeIII GTNAC 1 cut(s) 485
MalI GATC 3 cut(s) 5, 525, 662
MboI GATC 3 cut(s) 3, 523, 660
MboII GAAGA 3 cut(s) 265, 731, 1055
MflI RGATCY 1 cut(s) 660
MluCI AATT 7 cut(s) 329, 347, 842, 851, 949, 970, 992
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 3 cut(s) 290, 991, 1066
Mph1103I ATGCAT 2 cut(s) 135, 340
MroXI GAANNNNTTC 1 cut(s) 507
MspI CCGG 2 cut(s) 62, 1018
MspR9I CCNGG 3 cut(s) 464, 608, 1019
Mva1269I GAATGC 2 cut(s) 338, 364
MvaI CCWGG 2 cut(s) 464, 608
MvnI CGCG 1 cut(s) 941
MwoI GCNNNNNNNGC 2 cut(s) 203, 1019
NciI CCSGG 1 cut(s) 1019
NdeI CATATG 1 cut(s) 673
NdeII GATC 3 cut(s) 3, 523, 660
NlaIII CATG 3 cut(s) 275, 768, 1017
NruI TCGCGA 1 cut(s) 941
NsiI ATGCAT 2 cut(s) 135, 340
NspI RCATGY 3 cut(s) 275, 768, 1017
PaeI GCATGC 1 cut(s) 1017
PciI ACATGT 1 cut(s) 271
PctI GAATGC 2 cut(s) 338, 364
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 77, 185, 407, 695
PkrI GCNGC 2 cut(s) 727, 1012
PscI ACATGT 1 cut(s) 271
PshBI ATTAAT 1 cut(s) 867
PsiI TTATAA 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 462, 606
PspGI CCWGG 2 cut(s) 462, 606
PspPI GGNCC 1 cut(s) 1020
PsuI RGATCY 1 cut(s) 660
RruI TCGCGA 1 cut(s) 941
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SatI GCNGC 2 cut(s) 726, 1011
Sau3AI GATC 3 cut(s) 3, 523, 660
Sau96I GGNCC 1 cut(s) 1020
ScrFI CCNGG 3 cut(s) 464, 608, 1019
SfaNI GCATC 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 281, 921
SmoI CTYRAG 2 cut(s) 281, 921
SpeI ACTAGT 1 cut(s) 493
SphI GCATGC 1 cut(s) 1017
Sse9I AATT 7 cut(s) 329, 347, 842, 851, 949, 970, 992
SsiI CCGC 2 cut(s) 71, 725
SspMI CTAG 3 cut(s) 494, 684, 1059
StyD4I CCNGG 3 cut(s) 462, 606, 1017
TaaI ACNGT 4 cut(s) 220, 392, 550, 985
TaqI TCGA 6 cut(s) 245, 558, 693, 933, 996, 1077
TaqII GACCGA 2 cut(s) 109, 863
TasI AATT 7 cut(s) 329, 347, 842, 851, 949, 970, 992
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 4 cut(s) 77, 185, 407, 695
TseI GCWGC 1 cut(s) 1010
TspDTI ATGAA 7 cut(s) 85, 266, 309, 331, 357, 687, 853
TspGWI ACGGA 1 cut(s) 419
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 3 cut(s) 851, 949, 992
XbaI TCTAGA 1 cut(s) 683
XceI RCATGY 3 cut(s) 275, 768, 1017
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 3 cut(s) 494, 684, 1059
Zsp2I ATGCAT 2 cut(s) 135, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.