Rw7G005810
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0025120
Physical Location & Seq
Forward (+)
4883172 .. 4883621
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005810.1

Sequence Viewer

Length: 450 bp
ATGCCATTCAACACACTTACAGGCATACCTCTTGCTTCATTGTTTTCATTGCCAAACATCAGCTATTTGAATCTGGCTTCGAATTTGTTAAGTGGTTCACTTCCGGGCCATTTAAGCTGTGGCATTAGACTTGATTACATTCATATATCGAACAATAGGTTGACAGCTGACTTGCCTTCTTGTTTGGGACCTGAATCAGAAGAGAGAGTTGTGAATTTTGGTGGGAGTTGCTTATCTGTTAGTACGCAAAATCAGGAACCAGAGTCATATTGCAATGTAGTAGTCACTAGTCAGTCCAAAGAAGAAACAATCTGGAGGAAAAGAGTAGGAATCTTGGTGGGTGTGGTTGTTGGAATATTTGTGCCTTTTAGTGCTTCTGGTTTGAGCTGTATCATTTTGTGTAGAAAATATCTCCCTCGGGGAGTATCGGAGCAGCATTTGCTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.19

Weight (kDa)

6.8

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 54 7.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0025120)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184911
rosa_samantha Rh7CG071000
rosa_wichuraiana Rw7G005810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 82, 214
AfaI GTAC 1 cut(s) 244
AgsI TTSAA 2 cut(s) 10, 70
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 4 cut(s) 63, 117, 167, 387
AluI AGCT 4 cut(s) 63, 117, 167, 387
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 2 cut(s) 82, 214
AspS9I GGNCC 2 cut(s) 106, 188
AsuC2I CCSGG 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 445
BcnI CCSGG 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 2 cut(s) 106, 188
BmiI GGNNCC 2 cut(s) 189, 258
BmrFI CCNGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 416
Bse3DI GCAATG 2 cut(s) 47, 280
BseDI CCNNGG 1 cut(s) 416
BseMI GCAATG 2 cut(s) 47, 280
BseXI GCAGC 1 cut(s) 445
BshFI GGCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 80
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 189, 258
BspT104I TTCGAA 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 47, 280
BssECI CCNNGG 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 114, 439
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 106, 188
Csp6I GTAC 1 cut(s) 243
CviJI RGCY 6 cut(s) 63, 77, 108, 117, 167, 387
CviKI_1 RGCY 6 cut(s) 63, 77, 108, 117, 167, 387
CviQI GTAC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 188
FaiI YATR 4 cut(s) 26, 144, 146, 268
FaqI GGGAC 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 4 cut(s) 70, 194, 263, 330
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 98, 162
Hpy188I TCNGA 2 cut(s) 199, 430
Hpy188III TCNNGA 2 cut(s) 254, 313
Hpy8I GTNNAC 2 cut(s) 98, 162
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 439
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 8 cut(s) 6, 59, 117, 204, 239, 273, 298, 363
Lsp1109I GCAGC 1 cut(s) 445
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 283
MboII GAAGA 2 cut(s) 212, 314
MluCI AATT 2 cut(s) 82, 214
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 39, 309, 426
MseI TTAA 3 cut(s) 89, 113, 448
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 114, 439
NciI CCSGG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 189, 258
NmuCI GTSAC 1 cut(s) 283
NspV TTCGAA 1 cut(s) 80
PfeI GAWTC 3 cut(s) 70, 194, 330
PkrI GCNGC 1 cut(s) 435
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 189, 258
PspPI GGNCC 2 cut(s) 106, 188
PspPPI RGGWCCY 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 89, 113, 448
SatI GCNGC 1 cut(s) 434
Sau96I GGNCC 2 cut(s) 106, 188
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 105
SetI ASST 7 cut(s) 31, 65, 119, 161, 169, 193, 389
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 188
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 2 cut(s) 82, 214
SspI AATATT 1 cut(s) 357
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 2 cut(s) 80, 149
TasI AATT 2 cut(s) 82, 214
TfiI GAWTC 3 cut(s) 70, 194, 330
Tru1I TTAA 3 cut(s) 89, 113, 448
Tru9I TTAA 3 cut(s) 89, 113, 448
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 27, 36, 131
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 82, 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.