Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0020235

Physical Location & Seq

Genomic Coordinates Reverse (-)

21344703 .. 21345104

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGTAAAGACACTATTGCTGACATAATAACCTCTATACGAAATGCTGACATGAATGAAAAAAGAACAGTTCGAACACCATCTACTAACATGACTGAAAATATTGTTAAAATCCTTTTACGAGAAGGTTTTATTGAAAACGTGAGAAAACATCAGGAAAGCAATAAATATTTTTTGGTTTTAACCCTACGACATAGGAGAAATAGGAAAGAATCATATAGAACTGTTTTCAATTTAAAACGGATCAGCCGGTCCGGCCTACGAATTTATTCTGACTATCAAGGAATTCCGAGAATTTTAGGCGGAATGGGGATTGTAATTCTTTCCACTTCTCGAGGGATAATGACAGACCGAGAGGCTCGAATAGAAGGAATCAGCGGGGAAATTTTGTGTTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14 Ribosomal_L16 Ribosomal_S8

Protein Analysis

133

Amino Acids

15.42

Weight (kDa)

10.26

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	4 - 133	2e-38	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00770
rosa_chinensis	RchiOBHm_CPg0501871
rosa_roxburghii	Rroxscaffold_2G00119000
rosa_samantha	Rh1CG032600
rosa_wichuraiana	Rw7G013540 Rw7G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	303, 378
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	4 cut(s)	264, 285, 294, 384
AgsI	TTSAA	2 cut(s)	137, 232
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	4 cut(s)	264, 285, 294, 384
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	252
AsuII	TTCGAA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	252
BccI	CCATC	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	249
BshFI	GGCC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	250, 255
BsnI	GGCC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	2 cut(s)	303, 378
BspANI	GGCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BssMI	GATC	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	70, 226
BstBI	TTCGAA	1 cut(s)	73
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	252
CpoI	CGGWCCG	1 cut(s)	252
CspI	CGGWCCG	1 cut(s)	252
CviAII	CATG	2 cut(s)	52, 91
CviJI	RGCY	3 cut(s)	249, 258, 359
CviKI_1	RGCY	3 cut(s)	249, 258, 359
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DraI	TTTAAA	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	285
FaeI	CATG	2 cut(s)	55, 94
FatI	CATG	2 cut(s)	51, 90
FauI	CCCGC	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	250, 255
Hin1II	CATG	2 cut(s)	55, 94
HinfI	GANTC	2 cut(s)	212, 372
HpaII	CCGG	2 cut(s)	250, 255
Hpy188I	TCNGA	2 cut(s)	274, 291
Hpy188III	TCNNGA	2 cut(s)	155, 333
HpyAV	CCTTC	2 cut(s)	119, 362
HpyCH4III	ACNGT	2 cut(s)	70, 226
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	55, 94
Kzo9I	GATC	1 cut(s)	243
LpnPI	CCDG	3 cut(s)	140, 263, 268
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MluCI	AATT	6 cut(s)	232, 264, 285, 294, 318, 384
MnlI	CCTC	3 cut(s)	43, 329, 349
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	3 cut(s)	108, 182, 236
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	2 cut(s)	250, 255
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	2 cut(s)	55, 94
NspV	TTCGAA	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	212, 372
PspPI	GGNCC	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	108, 182, 236
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	252
SetI	ASST	3 cut(s)	35, 130, 144
Sfr274I	CTCGAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	6 cut(s)	232, 264, 285, 294, 318, 384
SsiI	CCGC	2 cut(s)	303, 378
SspI	AATATT	2 cut(s)	103, 170
TaaI	ACNGT	2 cut(s)	70, 226
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	73, 334, 361
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	6 cut(s)	232, 264, 285, 294, 318, 384
TfiI	GAWTC	2 cut(s)	212, 372
Tru1I	TTAA	3 cut(s)	108, 182, 236
Tru9I	TTAA	3 cut(s)	108, 182, 236
TspDTI	ATGAA	2 cut(s)	68, 72
TspGWI	ACGGA	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	4 cut(s)	264, 285, 294, 384
XhoI	CTCGAG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.