Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021895

Physical Location & Seq

Genomic Coordinates Reverse (-)

463754 .. 464981

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02335.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATGAATTCAAGAATTTCTATTATCATTGCGTTATCTTGCATTATGATCACTTCAATTCGTGCATACGATCCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGATTTCCGTGCAAGGAAACATTAAACATCACGGAGTCCGACTTCTTCTTCGCCGGAATCTCAAAACCCGCCGTCATAAACTCTACGATGGGTTCGGCCGTAACAGGAGCCAACGTGGAAAAGATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGAGGTTTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACGTTCTAGAAGGAGAGCTTGAGGTTGGATTTATCACAACAGCGAATAAGCTTTTCACTAAAACCATAAAGATTGGTGAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAAAAGAACAATGGGAAATCTCCCGCGTCGGTTTTGTCGGCATTTAATAGTCAGTTGCCGGGAACGGCTTCTGTTGCGGCAACCCTATTTGCGGCAGAGCCGGCTTTGCCGGAAGATGTGTTAACTAAGACTTTTCAAGTGGGATCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCCACTAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

219

Amino Acids

23.44

Weight (kDa)

8.73

Isoelectric Point (pI)

22.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	63 - 208	7.8e-53	Cupin
Cupin_2	PF07883	98 - 170	6.3e-13	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02335 AT3G62020 AT3G62020
prunus_persica	Prupe.3G000600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	3 cut(s)	302, 339, 494
AciI	CCGC	5 cut(s)	198, 323, 492, 545, 560
AclWI	GGATC	3 cut(s)	65, 247, 619
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	7, 15
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	12, 57, 86, 470, 605
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	373, 406
AluI	AGCT	2 cut(s)	373, 406
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	3 cut(s)	65, 247, 619
AoxI	GGCC	2 cut(s)	225, 259
ApoI	RAATTY	2 cut(s)	7, 15
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp700I	GAANNNNTTC	1 cut(s)	535
AspLEI	GCGC	2 cut(s)	304, 341
AsuC2I	CCSGG	2 cut(s)	306, 528
AsuHPI	GGTGA	2 cut(s)	323, 443
BccI	CCATC	2 cut(s)	211, 613
BceAI	ACGGC	3 cut(s)	185, 212, 549
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	306, 528
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	2 cut(s)	546, 561
BlsI	GCNGC	2 cut(s)	547, 562
Bme1390I	CCNGG	3 cut(s)	258, 306, 528
BmiI	GGNNCC	2 cut(s)	118, 238
BmrFI	CCNGG	3 cut(s)	258, 306, 528
Bpu10I	CCTNAGC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	306, 528
BsaAI	YACGTR	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 257, 258, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMI	GCAATG	1 cut(s)	27
BseX3I	CGGCCG	1 cut(s)	225
Bsh1236I	CGCG	3 cut(s)	302, 339, 494
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	227, 261
BsiEI	CGRYCG	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	183, 305, 527, 569, 578
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	227, 261
Bsp143I	GATC	5 cut(s)	48, 70, 88, 252, 611
BspACI	CCGC	5 cut(s)	198, 323, 492, 545, 560
BspANI	GGCC	2 cut(s)	227, 261
BspFNI	CGCG	3 cut(s)	302, 339, 494
BspLI	GGNNCC	2 cut(s)	118, 238
BspPI	GGATC	3 cut(s)	65, 247, 619
BspQI	GCTCTTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	568
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	5 cut(s)	48, 70, 88, 252, 611
Bst2UI	CCWGG	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	570, 645
BstDEI	CTNAG	3 cut(s)	283, 594, 615
BstFNI	CGCG	3 cut(s)	302, 339, 494
BstHHI	GCGC	2 cut(s)	304, 341
BstKTI	GATC	5 cut(s)	51, 73, 91, 255, 614
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	5 cut(s)	48, 70, 88, 252, 611
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	542, 569, 574
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	3 cut(s)	256, 304, 526
BstUI	CGCG	3 cut(s)	302, 339, 494
BstX2I	RGATCY	3 cut(s)	88, 252, 611
BstYI	RGATCY	3 cut(s)	88, 252, 611
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	227, 261
Cac8I	GCNNGC	2 cut(s)	570, 645
CfoI	GCGC	2 cut(s)	304, 341
Cfr10I	RCCGGY	1 cut(s)	568
CseI	GACGC	2 cut(s)	86, 483
DdeI	CTNAG	3 cut(s)	283, 594, 615
DpnI	GATC	5 cut(s)	50, 72, 90, 254, 613
DpnII	GATC	5 cut(s)	48, 70, 88, 252, 611
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	225
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	283
FaiI	YATR	5 cut(s)	47, 67, 206, 293, 422
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FauI	CCCGC	2 cut(s)	205, 499
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	546, 561
Fsp4HI	GCNGC	2 cut(s)	546, 561
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	303, 340
GluI	GCNGC	2 cut(s)	546, 561
HaeIII	GGCC	2 cut(s)	227, 261
HapII	CCGG	5 cut(s)	183, 305, 527, 569, 578
HgaI	GACGC	2 cut(s)	86, 483
HhaI	GCGC	2 cut(s)	304, 341
Hin6I	GCGC	2 cut(s)	302, 339
HinP1I	GCGC	2 cut(s)	302, 339
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	164, 186
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	5 cut(s)	183, 305, 527, 569, 578
HphI	GGTGA	2 cut(s)	323, 443
Hpy166II	GTNNAC	2 cut(s)	355, 591
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	4 cut(s)	12, 74, 86, 362
Hpy8I	GTNNAC	2 cut(s)	355, 591
Hpy99I	CGWCG	2 cut(s)	80, 499
HpyAV	CCTTC	1 cut(s)	359
HpyCH4IV	ACGT	3 cut(s)	243, 289, 357
HpyCH4V	TGCA	4 cut(s)	42, 65, 141, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	542, 569, 574
HpyF3I	CTNAG	3 cut(s)	283, 594, 615
HpySE526I	ACGT	3 cut(s)	243, 289, 357
HspAI	GCGC	2 cut(s)	302, 339
KroI	GCCGGC	1 cut(s)	568
KroNI	GCCGGC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	5 cut(s)	48, 70, 88, 252, 611
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	8 cut(s)	196, 219, 243, 270, 318, 540, 582, 591
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	3 cut(s)	243, 289, 357
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	5 cut(s)	50, 72, 90, 254, 613
MboI	GATC	5 cut(s)	48, 70, 88, 252, 611
MboII	GAAGA	4 cut(s)	74, 166, 169, 593
MflI	RGATCY	3 cut(s)	88, 252, 611
MluCI	AATT	3 cut(s)	7, 15, 57
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	192, 361
MnlI	CCTC	4 cut(s)	272, 302, 370, 446
MroNI	GCCGGC	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	5 cut(s)	152, 314, 513, 590, 633
MspI	CCGG	5 cut(s)	183, 305, 527, 569, 578
MspR9I	CCNGG	3 cut(s)	258, 306, 528
MssI	GTTTAAAC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	3 cut(s)	302, 339, 494
MwoI	GCNNNNNNNGC	3 cut(s)	542, 569, 574
NaeI	GCCGGC	1 cut(s)	570
NciI	CCSGG	2 cut(s)	306, 528
NdeII	GATC	5 cut(s)	48, 70, 88, 252, 611
NgoMIV	GCCGGC	1 cut(s)	568
NlaIV	GGNNCC	2 cut(s)	118, 238
PceI	AGGCCT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	547, 562
PleI	GAGTC	1 cut(s)	172
PmeI	GTTTAAAC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	118, 238
PsuI	RGATCY	3 cut(s)	88, 252, 611
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	5 cut(s)	152, 314, 513, 590, 633
SatI	GCNGC	2 cut(s)	546, 561
Sau3AI	GATC	5 cut(s)	48, 70, 88, 252, 611
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	258, 306, 528
SetI	ASST	7 cut(s)	246, 292, 313, 360, 375, 381, 408
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	7, 15, 57
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	5 cut(s)	198, 323, 492, 545, 560
SspMI	CTAG	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	256, 304, 526
TaiI	ACGT	3 cut(s)	246, 292, 360
TasI	AATT	3 cut(s)	7, 15, 57
TauI	GCSGC	2 cut(s)	548, 563
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	5 cut(s)	152, 314, 513, 590, 633
Tru9I	TTAA	5 cut(s)	152, 314, 513, 590, 633
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	4 cut(s)	126, 129, 176, 265
XapI	RAATTY	2 cut(s)	7, 15
XbaI	TCTAGA	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.