Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021895

Physical Location & Seq

Genomic Coordinates Reverse (-)

22971358 .. 22972303

Gene Structure 946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACTCGAGATGTTTTGGCTTCTTCTTTACTTTGTTATCTCTAAATGTGATTGTTCTTGCTTACGATCCTGACACACTTCAAGATCTCTGCGTTGCGGATCGCACTTCAGGGATAAAAGTGAATGGTTTCACATGTAAACCCGAATCAAACATCACCGCTTCAGATTTTTTCTTCGCCGGAATCGGAAAACCCGCCGTCGTTAACAACACAGTCGGGTCAGCCGTCACGGGAGCAAACGTAGAGAAGATCGCAGGGCTTAACACGCTCGGAGTCTCACTCGCGCGTATCGACTACGCTCCCGGAGGTTTAAACCCGCCGCACACGCATCCACGCGCCACCGAAGTGATCTTCGTTTTGGAAGGCGAGCTTGACGTTGGATTCATAACGACGGCGAACAAGCTCTTCGCTAAGACGGTGAAGAAAGGAGAAGTGTTCGTCTTCCCTAGAGGATTGATTCATTACCAGAAAAACAACGACAAAGCGAAACCGGCGTCGGTGATCTCTGCGTTCAACAGTCAATTACCGGGAACACAATCGATCGCCGCCACGCTATTCACAGCCACTCCGGCGATTCCGGATCACGTTTTAACGACGACGTTTCAAATCGGAACGAAAGAAATCGAAAAAATCAAATCTAAGTTTGCTCCCAAGAAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

220

Amino Acids

23.55

Weight (kDa)

8.94

Isoelectric Point (pI)

22.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	62 - 208	1.7e-50	Cupin
Cupin_2	PF07883	97 - 170	3e-12	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02335 AT3G62020 AT3G62020
prunus_persica	Prupe.3G000600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	284, 286, 336
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	6 cut(s)	98, 159, 195, 317, 320, 546
AclWI	GGATC	3 cut(s)	62, 108, 588
AcuI	CTGAAG	2 cut(s)	93, 147
AcyI	GRCGYC	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	83, 514, 605
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	2 cut(s)	370, 403
AluI	AGCT	2 cut(s)	370, 403
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	3 cut(s)	62, 108, 588
Ama87I	CYCGRG	1 cut(s)	7
Aor13HI	TCCGGA	1 cut(s)	577
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	286, 338
AsuC2I	CCSGG	2 cut(s)	303, 528
AsuHPI	GGTGA	3 cut(s)	148, 430, 511
AvaI	CYCGRG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	433
BceAI	ACGGC	3 cut(s)	182, 209, 408
BcnI	CCSGG	2 cut(s)	303, 528
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	447
BglI	GCCNNNNNGGC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	2 cut(s)	320, 546
BlsI	GCNGC	2 cut(s)	321, 547
Bme1390I	CCNGG	2 cut(s)	303, 528
BmeT110I	CYCGRG	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	303, 528
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpuMI	CCSGG	2 cut(s)	303, 528
Bsa29I	ATCGAT	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	494
BsaWI	WCCGGW	1 cut(s)	577
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 550, 580
Bse118I	RCCGGY	1 cut(s)	490
BseAI	TCCGGA	1 cut(s)	577
BseCI	ATCGAT	1 cut(s)	539
BseGI	GGATG	1 cut(s)	328
Bsh1236I	CGCG	3 cut(s)	284, 286, 336
Bsh1285I	CGRYCG	1 cut(s)	543
BshVI	ATCGAT	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	6 cut(s)	180, 303, 491, 527, 569, 578
BsmAI	GTCTC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	7
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
BspACI	CCGC	6 cut(s)	98, 159, 195, 317, 320, 546
BspDI	ATCGAT	1 cut(s)	539
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	3 cut(s)	284, 286, 336
BspPI	GGATC	3 cut(s)	62, 108, 588
BspQI	GCTCTTC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	490
BssMI	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
BssNI	GRCGYC	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	214, 418, 518
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	411, 639
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	3 cut(s)	284, 286, 336
BstHHI	GCGC	2 cut(s)	286, 338
BstKTI	GATC	8 cut(s)	70, 88, 103, 252, 351, 504, 543, 583
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 325, 491, 569
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	301, 526
BstUI	CGCG	3 cut(s)	284, 286, 336
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	539
BsuTUI	ATCGAT	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	2 cut(s)	286, 338
Cfr10I	RCCGGY	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	539
CseI	GACGC	1 cut(s)	483
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	6 cut(s)	21, 224, 259, 370, 403, 563
CviKI_1	RGCY	6 cut(s)	21, 224, 259, 370, 403, 563
DdeI	CTNAG	2 cut(s)	411, 639
DpnI	GATC	8 cut(s)	69, 87, 102, 251, 350, 503, 542, 582
DpnII	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco57I	CTGAAG	2 cut(s)	93, 147
Eco88I	CYCGRG	1 cut(s)	7
FaeI	CATG	1 cut(s)	138
FaiI	YATR	2 cut(s)	136, 386
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	1 cut(s)	134
FauI	CCCGC	2 cut(s)	202, 324
Fnu4HI	GCNGC	2 cut(s)	320, 546
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	320, 546
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	285, 337
GluI	GCNGC	2 cut(s)	320, 546
HapII	CCGG	6 cut(s)	180, 303, 491, 527, 569, 578
HgaI	GACGC	1 cut(s)	483
HhaI	GCGC	2 cut(s)	286, 338
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	1 cut(s)	138
Hin6I	GCGC	2 cut(s)	284, 336
HinP1I	GCGC	2 cut(s)	284, 336
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	7 cut(s)	5, 146, 183, 273, 381, 457, 574
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	6 cut(s)	180, 303, 491, 527, 569, 578
HphI	GGTGA	3 cut(s)	148, 430, 511
Hpy166II	GTNNAC	2 cut(s)	140, 205
Hpy188I	TCNGA	4 cut(s)	166, 188, 272, 611
Hpy188III	TCNNGA	4 cut(s)	9, 71, 83, 578
Hpy8I	GTNNAC	2 cut(s)	140, 205
Hpy99I	CGWCG	5 cut(s)	203, 394, 499, 598, 601
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	3 cut(s)	214, 418, 518
HpyCH4IV	ACGT	4 cut(s)	240, 375, 585, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 325, 491, 569
HpyF3I	CTNAG	2 cut(s)	411, 639
HpySE526I	ACGT	4 cut(s)	240, 375, 585, 599
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	138
HspAI	GCGC	2 cut(s)	284, 336
Kpn2I	TCCGGA	1 cut(s)	577
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	3 cut(s)	233, 304, 652
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	4 cut(s)	240, 375, 585, 599
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	8 cut(s)	69, 87, 102, 251, 350, 503, 542, 582
MboI	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
MboII	GAAGA	7 cut(s)	16, 166, 259, 343, 397, 433, 433
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	2 cut(s)	299, 443
MroI	TCCGGA	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	4 cut(s)	204, 261, 311, 590
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	6 cut(s)	180, 303, 491, 527, 569, 578
MspR9I	CCNGG	2 cut(s)	303, 528
MssI	GTTTAAAC	1 cut(s)	312
MvnI	CGCG	3 cut(s)	284, 286, 336
MwoI	GCNNNNNNNGC	4 cut(s)	265, 325, 491, 569
NciI	CCSGG	2 cut(s)	303, 528
NdeII	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
NlaIII	CATG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	7
PciI	ACATGT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 288
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	5 cut(s)	146, 183, 381, 457, 574
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	321, 547
Ple19I	CGATCG	1 cut(s)	543
PleI	GAGTC	1 cut(s)	281
PmeI	GTTTAAAC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	204, 261, 311, 590
SatI	GCNGC	2 cut(s)	320, 546
Sau3AI	GATC	8 cut(s)	67, 85, 100, 249, 348, 501, 540, 580
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	303, 528
SetI	ASST	7 cut(s)	243, 310, 372, 378, 405, 588, 602
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	521
SsiI	CCGC	6 cut(s)	98, 159, 195, 317, 320, 546
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	301, 526
TaaI	ACNGT	3 cut(s)	214, 418, 518
TaiI	ACGT	4 cut(s)	243, 378, 588, 602
TaqI	TCGA	4 cut(s)	8, 291, 539, 624
TasI	AATT	1 cut(s)	521
TauI	GCSGC	2 cut(s)	322, 548
TfiI	GAWTC	5 cut(s)	146, 183, 381, 457, 574
Tru1I	TTAA	4 cut(s)	204, 261, 311, 590
Tru9I	TTAA	4 cut(s)	204, 261, 311, 590
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	373, 449
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.