Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017080

Physical Location & Seq

Genomic Coordinates Forward (+)

1279351 .. 1281618

Gene Structure 2268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTATGGAAATAATAACAAGAAGTCTATCAACATCACGAGTATGTTTCAAAACCTCATCCCCGAAGGCAGCGACATTTTCTCCCGGCGTTGCATCTGGGTCAATGGACCCGTCATCGTCGGAGCTGGCCCATCAGGTCTAGCCGTTGCTGCGGGCTTGAAACGTGAAGGGGTACCATTCATAATCCTCGAGCGAGCTAACTGCATTGCTTCATTATGGCAAAACAGAACCTACGATCGTCTCAAACTCCATCTACCTAAACAGTTTTGCCAATTACCCAATTATCCTTTCCCGGACGAGTTCCCTGAGTACCCTACCAAGTTTCAGTTTATTCAGTACCTTGAGTCCTACGCAGCCAACTTTGACATCAACCCTAAGTTCAACGAGACAGTCCAGTCCGCTAAATATGATGAGACGTTCGGGCTGTGGCGGGTTAAGACCATTTCAAACATGGGTCAGCTCGGTTCTTGCGAGTTTGAGTATATATGCAGATGGATTGTGGTGGCAACGGGAGAGAACGCTGAGAAAGTTGTGCCGGATTTTGAAGGTCTAGAGGATTTTGGCGGCGATGTTCTCCATGCTGGTGACTATAAATCCGGTGGAAGGTACCAAGGGAAAAAGGTTTTGGTGGTGGGATGTGGAAACTCCGGTATGGAAGTCTCTCTCGATCTCTACAATCACGGAGCAAACCCATCGATGGTCGTTCGTAGCGCTGTTCATGTTTTACCAAGAGAGATTTTTGGGAAATCAACGTTTGAATTAGGAGTTACGATGATGAAGTATATGCCCGTTTGGCTCGCGGACAAGACTATACTCTTTCTGGCGAGGATTATCTTGGGGAATACCGATAAATACGGTCTAAAAAGGCCGAAAATTGGACCGTTAGAGCTAAAGAACAAGGAAGGCAAAACTCCGGTTCTTGACATCGGAGCGTTACCCAAAATCAGATCGGGAAAGATCAAAATCGTCCCCGGAATCATAAAGTTCGGCAAAGGCAAAGTTGAGCTAATAGATGGCCGTGTTCTTGAGATTGATTCCGTTATTCTAGCTACTGGATACAGAAGCAACGTCCCTTCATGGCTTAAGGACAACGACTTCTTCTCCGATGATGGGATACCAAAAAACCCGTTTCCAAACGGATGGAAAGGAGAGGCGGGATTGTATGCGGTAGGGTTCACGAGAAAAGGATTGTTTGGTGCGTCGCTTGATGCTATGAGTGTGGCTCATGATATTGCTAATAGGTGGAAAGAAGAGTCTAAGCAACAGAAGAAAACTGCTGCTGCTCGTCATCGTCGTTGTATTTCACATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009683 GO:0009684 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009850 GO:0009851 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010600 GO:0010817 GO:0014070 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032787 GO:0032870 GO:0033993 GO:0034641 GO:0034754 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043401 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046885 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0072330 GO:0090354 GO:0103075 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like Pyr_redox_3

Protein Analysis

437

Amino Acids

48.75

Weight (kDa)

9.18

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_3	PF13738	38 - 238	1.2e-22	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2	PF07992	38 - 242	1.1e-09	Pyridine nucleotide-disulphide oxidoreductase
FMO-like	PF00743	39 - 358	2.4e-26	Flavin-binding monooxygenase-like
Lys_Orn_oxgnase	PF13434	103 - 232	1.1e-11	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04610 AT2G33230
fragaria_vesca	FvH4_4g05280
malus_domestica	MD16G1232600.v1.1
prunus_persica	Prupe.1G054300_v2.0.a1
pyrus_communis	pycom16g19460
rosa_chinensis	RchiOBHm_Chr4g0396251
rosa_laevigata	RLG00000009557
rosa_multiflora	Rmu_sc0006325.1_g000058
rosa_roxburghii	Rroxscaffold_5G00341070
rosa_rugosa	Rorug03G0350800
rosa_samantha	Rh4DG062600
rosa_wichuraiana	Rw4G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	394
Acc65I	GGTACC	2 cut(s)	172, 606
AccB1I	GGYRCC	2 cut(s)	172, 606
AccII	CGCG	1 cut(s)	800
AciI	CCGC	7 cut(s)	152, 399, 430, 564, 800, 1154, 1166
AclI	AACGTT	1 cut(s)	752
AcoI	YGGCCR	1 cut(s)	1015
AfaI	GTAC	4 cut(s)	174, 311, 338, 608
AfeI	AGCGCT	1 cut(s)	712
AfiI	CCNNNNNNNGG	4 cut(s)	603, 697, 875, 1110
AflII	CTTAAG	1 cut(s)	1082
AgsI	TTSAA	6 cut(s)	50, 160, 382, 447, 545, 758
AjuI	GAANNNNNNNTTGG	4 cut(s)	272, 304, 608, 640
AluBI	AGCT	6 cut(s)	125, 197, 460, 889, 1006, 1049
AluI	AGCT	6 cut(s)	125, 197, 460, 889, 1006, 1049
Alw26I	GTCTC	4 cut(s)	245, 380, 407, 664
Ama87I	CYCGRG	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	712
AoxI	GGCC	3 cut(s)	127, 866, 1015
ApeKI	GCWGC	5 cut(s)	69, 149, 353, 1277, 1280
Asp718I	GGTACC	2 cut(s)	172, 606
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	107, 128, 878
AsuC2I	CCSGG	3 cut(s)	85, 293, 972
AsuHPI	GGTGA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	107, 878
BanI	GGYRCC	2 cut(s)	172, 606
BauI	CACGAG	2 cut(s)	37, 1177
BbvI	GCAGC	5 cut(s)	81, 136, 365, 1264, 1267
BccI	CCATC	8 cut(s)	139, 258, 486, 691, 700, 1007, 1103, 1134
BceAI	ACGGC	2 cut(s)	128, 1002
BcgI	CGANNNNNNTGC	4 cut(s)	183, 217, 675, 709
BciVI	GTATCC	2 cut(s)	1049, 1107
BcnI	CCSGG	3 cut(s)	85, 293, 972
BcoDI	GTCTC	4 cut(s)	245, 380, 407, 664
BfaI	CTAG	3 cut(s)	140, 551, 1046
BfoI	RGCGCY	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	1082
BfuI	GTATCC	2 cut(s)	1049, 1107
BglI	GCCNNNNNGGC	1 cut(s)	793
BisI	GCNGC	6 cut(s)	70, 150, 354, 565, 1278, 1281
BlsI	GCNGC	6 cut(s)	71, 151, 355, 566, 1279, 1282
Bme1390I	CCNGG	3 cut(s)	85, 293, 972
Bme18I	GGWCC	2 cut(s)	107, 878
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	107, 128, 878
BmiI	GGNNCC	3 cut(s)	109, 174, 608
BmrFI	CCNGG	3 cut(s)	85, 293, 972
BmsI	GCATC	2 cut(s)	102, 1198
BplI	GAGNNNNNCTC	2 cut(s)	1207, 1239
BpuEI	CTTGAG	2 cut(s)	362, 1046
BpuMI	CCSGG	3 cut(s)	85, 293, 972
Bsa29I	ATCGAT	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	962
BsaJI	CCNNGG	2 cut(s)	610, 970
BsaWI	WCCGGW	3 cut(s)	596, 647, 913
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 1085, 1115
Bsc4I	CCNNNNNNNGG	4 cut(s)	603, 697, 875, 1110
Bse1I	ACTGG	2 cut(s)	394, 1057
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	962
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	610, 970
BseGI	GGATG	3 cut(s)	57, 641, 1145
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	4 cut(s)	603, 697, 875, 1110
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	297, 513
BseNI	ACTGG	2 cut(s)	394, 1057
BseXI	GCAGC	5 cut(s)	81, 136, 365, 1264, 1267
Bsh1236I	CGCG	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	129, 868, 1017
BshNI	GGYRCC	2 cut(s)	172, 606
BshVI	ATCGAT	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	7 cut(s)	85, 293, 536, 597, 648, 914, 972
BslFI	GGGAC	2 cut(s)	953, 1055
BslI	CCNNNNNNNGG	4 cut(s)	603, 697, 875, 1110
BsmAI	GTCTC	4 cut(s)	245, 380, 407, 664
BsmBI	CGTCTC	2 cut(s)	245, 407
BsmFI	GGGAC	2 cut(s)	953, 1055
BsnI	GGCC	3 cut(s)	129, 868, 1017
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	4 cut(s)	235, 667, 947, 957
BspACI	CCGC	7 cut(s)	152, 399, 430, 564, 800, 1154, 1166
BspANI	GGCC	3 cut(s)	129, 868, 1017
BspCNI	CTCAG	2 cut(s)	298, 514
BspDI	ATCGAT	1 cut(s)	695
BspFNI	CGCG	1 cut(s)	800
BspHI	TCATGA	1 cut(s)	1225
BspLI	GGNNCC	3 cut(s)	109, 174, 608
BspT107I	GGYRCC	2 cut(s)	172, 606
BspTI	CTTAAG	1 cut(s)	1082
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	394, 1057
BssECI	CCNNGG	2 cut(s)	610, 970
BssMI	GATC	4 cut(s)	235, 667, 947, 957
BssSI	CACGAG	2 cut(s)	37, 1177
BssT1I	CCWWGG	1 cut(s)	610
Bst2BI	CACGAG	2 cut(s)	37, 1177
Bst4CI	ACNGT	4 cut(s)	264, 391, 857, 882
Bst6I	CTCTTC	1 cut(s)	1245
BstAFI	CTTAAG	1 cut(s)	1082
BstC8I	GCNNGC	4 cut(s)	127, 154, 195, 798
BstDEI	CTNAG	4 cut(s)	306, 375, 522, 1257
BstF5I	GGATG	3 cut(s)	57, 641, 1145
BstFNI	CGCG	1 cut(s)	800
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	4 cut(s)	238, 670, 950, 960
BstMAI	GTCTC	4 cut(s)	245, 380, 407, 664
BstMBI	GATC	4 cut(s)	235, 667, 947, 957
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 793
BstSCI	CCNGG	3 cut(s)	83, 291, 970
BstUI	CGCG	1 cut(s)	800
BstV1I	GCAGC	5 cut(s)	81, 136, 365, 1264, 1267
BstXI	CCANNNNNNTGG	1 cut(s)	1140
Bsu15I	ATCGAT	1 cut(s)	695
BsuI	GTATCC	2 cut(s)	1049, 1107
BsuRI	GGCC	3 cut(s)	129, 868, 1017
BsuTUI	ATCGAT	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	3 cut(s)	57, 641, 1145
Cac8I	GCNNGC	4 cut(s)	127, 154, 195, 798
CciI	TCATGA	1 cut(s)	1225
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	107, 128, 878
ClaI	ATCGAT	1 cut(s)	695
CseI	GACGC	1 cut(s)	1188
Csp6I	GTAC	4 cut(s)	173, 310, 337, 607
CviAII	CATG	5 cut(s)	451, 578, 719, 1077, 1226
CviQI	GTAC	4 cut(s)	173, 310, 337, 607
DdeI	CTNAG	4 cut(s)	306, 375, 522, 1257
DpnI	GATC	4 cut(s)	237, 669, 949, 959
DpnII	GATC	4 cut(s)	235, 667, 947, 957
DrdI	GACNNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	1015
Eam1104I	CTCTTC	1 cut(s)	1245
EarI	CTCTTC	1 cut(s)	1245
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	107, 878
Eco47III	AGCGCT	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
Esp3I	CGTCTC	2 cut(s)	245, 407
FaeI	CATG	5 cut(s)	454, 581, 722, 1080, 1229
FaqI	GGGAC	2 cut(s)	953, 1055
FatI	CATG	5 cut(s)	450, 577, 718, 1076, 1225
FauI	CCCGC	3 cut(s)	145, 423, 1147
Fnu4HI	GCNGC	6 cut(s)	70, 150, 354, 565, 1278, 1281
FokI	GGATG	3 cut(s)	44, 648, 1152
Fsp4HI	GCNGC	6 cut(s)	70, 150, 354, 565, 1278, 1281
FspBI	CTAG	3 cut(s)	140, 551, 1046
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	6 cut(s)	70, 150, 354, 565, 1278, 1281
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	129, 868, 1017
HapII	CCGG	7 cut(s)	85, 293, 536, 597, 648, 914, 972
HgaI	GACGC	1 cut(s)	1188
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	454, 581, 722, 1080, 1229
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HinfI	GANTC	4 cut(s)	344, 975, 1034, 1253
HpaII	CCGG	7 cut(s)	85, 293, 536, 597, 648, 914, 972
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	1176
Hpy188I	TCNGA	4 cut(s)	122, 929, 947, 1105
Hpy188III	TCNNGA	8 cut(s)	37, 551, 665, 920, 951, 1025, 1177, 1226
Hpy8I	GTNNAC	1 cut(s)	1176
Hpy99I	CGWCG	3 cut(s)	122, 1204, 1296
HpyAV	CCTTC	6 cut(s)	59, 161, 539, 597, 896, 1083
HpyCH4III	ACNGT	4 cut(s)	264, 391, 857, 882
HpyCH4IV	ACGT	4 cut(s)	163, 416, 752, 1068
HpyCH4V	TGCA	3 cut(s)	93, 204, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 793
HpyF3I	CTNAG	4 cut(s)	306, 375, 522, 1257
HpySE526I	ACGT	4 cut(s)	163, 416, 752, 1068
Hsp92II	CATG	5 cut(s)	454, 581, 722, 1080, 1229
HspAI	GCGC	1 cut(s)	711
KpnI	GGTACC	2 cut(s)	176, 610
Kzo9I	GATC	4 cut(s)	235, 667, 947, 957
LmnI	GCTCC	3 cut(s)	122, 683, 929
Lsp1109I	GCAGC	5 cut(s)	81, 136, 365, 1264, 1267
LweI	GCATC	2 cut(s)	102, 1198
MaeI	CTAG	3 cut(s)	140, 551, 1046
MaeII	ACGT	4 cut(s)	163, 416, 752, 1068
MaeIII	GTNAC	3 cut(s)	584, 766, 933
MalI	GATC	4 cut(s)	237, 669, 949, 959
MboI	GATC	4 cut(s)	235, 667, 947, 957
MboII	GAAGA	3 cut(s)	1090, 1262, 1279
MluCI	AATT	4 cut(s)	272, 280, 758, 873
MlyI	GAGTC	2 cut(s)	353, 1262
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	65, 197, 547, 819, 1144
MseI	TTAA	2 cut(s)	435, 1083
MslI	CAYNNNNRTG	2 cut(s)	41, 582
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	7 cut(s)	85, 293, 536, 597, 648, 914, 972
MspR9I	CCNGG	3 cut(s)	85, 293, 972
MvnI	CGCG	1 cut(s)	800
MwoI	GCNNNNNNNGC	2 cut(s)	149, 793
NciI	CCSGG	3 cut(s)	85, 293, 972
NdeII	GATC	4 cut(s)	235, 667, 947, 957
NlaIII	CATG	5 cut(s)	454, 581, 722, 1080, 1229
NlaIV	GGNNCC	3 cut(s)	109, 174, 608
NmuCI	GTSAC	1 cut(s)	584
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	1225
PcsI	WCGNNNNNNNCGW	2 cut(s)	468, 1291
PfeI	GAWTC	2 cut(s)	975, 1034
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	6 cut(s)	71, 151, 355, 566, 1279, 1282
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	2 cut(s)	352, 1261
PpsI	GAGTC	2 cut(s)	352, 1261
Psp1406I	AACGTT	1 cut(s)	752
PspN4I	GGNNCC	3 cut(s)	109, 174, 608
PspPI	GGNCC	3 cut(s)	107, 128, 878
PspXI	VCTCGAGB	1 cut(s)	188
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	4 cut(s)	174, 311, 338, 608
RsaNI	GTAC	4 cut(s)	173, 310, 337, 607
RseI	CAYNNNNRTG	2 cut(s)	41, 582
SaqAI	TTAA	2 cut(s)	435, 1083
SatI	GCNGC	6 cut(s)	70, 150, 354, 565, 1278, 1281
Sau3AI	GATC	4 cut(s)	235, 667, 947, 957
Sau96I	GGNCC	3 cut(s)	107, 128, 878
SchI	GAGTC	2 cut(s)	353, 1262
ScrFI	CCNGG	3 cut(s)	85, 293, 972
SfaNI	GCATC	2 cut(s)	102, 1198
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	107, 878
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	41, 582
SmlI	CTYRAG	4 cut(s)	188, 341, 1025, 1082
SmoI	CTYRAG	4 cut(s)	188, 341, 1025, 1082
Sse9I	AATT	4 cut(s)	272, 280, 758, 873
SsiI	CCGC	7 cut(s)	152, 399, 430, 564, 800, 1154, 1166
SspMI	CTAG	3 cut(s)	140, 551, 1046
StyD4I	CCNGG	3 cut(s)	83, 291, 970
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	4 cut(s)	264, 391, 857, 882
TaiI	ACGT	4 cut(s)	166, 419, 755, 1071
TaqI	TCGA	3 cut(s)	189, 666, 695
TasI	AATT	4 cut(s)	272, 280, 758, 873
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	975, 1034
Tru1I	TTAA	2 cut(s)	435, 1083
Tru9I	TTAA	2 cut(s)	435, 1083
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	5 cut(s)	69, 149, 353, 1277, 1280
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	5 cut(s)	169, 201, 707, 791, 1065
TspGWI	ACGGA	3 cut(s)	696, 1027, 1152
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	2 cut(s)	107, 878
XbaI	TCTAGA	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	3 cut(s)	140, 551, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.