Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017080

Physical Location & Seq

Genomic Coordinates Forward (+)

3818775 .. 3820670

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G054300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGTTCCTCACTCATTTGACCAAGATGACCTTTTTGCTAGGAGATGCATTTGGGTGAATGGACCTGTTATAGTTGGGGCAGGTCCTTCAGGCCTAGCTGTTGGTGCTGGCCTTAAAGAACAGGGTGTCCCTTTCATTATCCTAGAAAGAGCCAATTGCATTGCTTCTCTTTGGCAAAAGCGCACATATGATCGGCTCAAGCTTCACCTCCCCAAGCAATTCTGCCAATTACCCAATTTCCCATTCCCAGAGGACTTCCCAGAATACCCCACTAAAAACCAGTTCATCAACTACCTAGAGTCCTATGCTCAACATTTTGACATCAGCCCCCAGTTCAATGAGACAGTCCAGTCTGCCAAGTATGATGAGACCTTTGGTCTGTGGAGGGTCAAGACCATTGTTTCAACAAGCAATTCAAACCCCGCTGCTGCGGAGGTTGAGTACATTTGCCGGTGGCTCGTGGTGGCCACCGGAGAGAACGCAGAGAAAGTAGTGCCAGAATTCGAAGGCTTGGAAGAGTTTGGTGGCAATGTCATGCATGTTTGTGACTACAAATCTGGCGTGGCTTACCGTGGTAAGCAAGTACTAGTTGTTGGCTGTGGAAATTCAGGCATGGAAGTCTCTCTTGATCTTTGCAATCACAATGCAAGCCCTTCAATGGTGGTTCGGAGTTCGGTTCATGTCTTGCCAAGGGAAATTTGTGGAAAGTCAACATTTGGATTAGCAGTTTTGTTGATGAAATGGCTACCACTTTGGCTTGCTGATAAGATATTGCTGATACTGGCATGGCTAATATTTGGAAATCTTGAAAAATATGGTCTTAGAAGACCATCTTTAGGGCCATTGGAACTCAAGAACATTTCAGGGAAGACCCCTGTGTTGGATATTGGTGCCTTACAGAAAATAAGATCTGGTGAGATCAAGGTGGTCCCTGGAATCAAGAGGTTTTCTCATGGTAGAGTTGAACTTGTTGATGGACAAAATCTTGAGATTGATTCTGTCATTTTGGCAACTGGGTATCGCAGCAATGTTCCTTCATGGCTCAAGGAAAATGAATTCTTTTCAAGAGAAGGAATTCCCAAGAATTCATTCCCAAATGGGTGGAAAGGGAAAGGTGGGCTTTACGCAGTTGGGTTCACAAGGAGAGGACTATCTGGAGCCTCACTAGATGCCATGGGAGTCTCACAGGACATTGCCAAGAGCTGGAAAGAAGAAACCAAGCAGAAGAGGAAATCTGTTGCAGCTAGACATCGCAGATGCATTTCACATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010035 GO:0010817 GO:0016053 GO:0018130 GO:0019438 GO:0019752 GO:0032787 GO:0034641 GO:0034754 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like Pyr_redox_3

Protein Analysis

425

Amino Acids

47.24

Weight (kDa)

9.0

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04610 AT2G33230
fragaria_vesca	FvH4_4g05280
malus_domestica	MD16G1232600.v1.1
prunus_persica	Prupe.1G054300_v2.0.a1
pyrus_communis	pycom16g19460
rosa_chinensis	RchiOBHm_Chr4g0396251
rosa_laevigata	RLG00000009557
rosa_multiflora	Rmu_sc0006325.1_g000058
rosa_roxburghii	Rroxscaffold_5G00341070
rosa_rugosa	Rorug03G0350800
rosa_samantha	Rh4DG062600
rosa_wichuraiana	Rw4G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	890
AccB7I	CCANNNNNTGG	1 cut(s)	1203
AciI	CCGC	2 cut(s)	423, 431
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	6 cut(s)	500, 604, 696, 1055, 1074, 1084
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	443, 585
AfiI	CCNNNNNNNGG	4 cut(s)	658, 836, 880, 1203
AgsI	TTSAA	7 cut(s)	337, 405, 417, 657, 809, 965, 1065
AhdI	GACNNNNNGTC	1 cut(s)	375
AhlI	ACTAGT	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	931
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 259, 1073, 1105
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	98, 202, 1203, 1244
AluI	AGCT	4 cut(s)	98, 202, 1203, 1244
Alw26I	GTCTC	4 cut(s)	335, 362, 625, 1186
AoxI	GGCC	4 cut(s)	91, 109, 465, 839
ApeKI	GCWGC	4 cut(s)	425, 428, 1023, 1241
ApoI	RAATTY	6 cut(s)	500, 604, 696, 1055, 1074, 1084
Asp700I	GAANNNNTTC	2 cut(s)	1074, 1088
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	4 cut(s)	62, 83, 839, 928
AsuHPI	GGTGA	3 cut(s)	67, 197, 926
AsuII	TTCGAA	1 cut(s)	504
AvaII	GGWCC	3 cut(s)	62, 83, 928
BalI	TGGCCA	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	890
BauI	CACGAG	1 cut(s)	458
BbsI	GAAGAC	2 cut(s)	832, 875
BbvI	GCAGC	4 cut(s)	412, 415, 1035, 1253
BccI	CCATC	2 cut(s)	838, 968
BciT130I	CCWGG	1 cut(s)	933
BcoDI	GTCTC	4 cut(s)	335, 362, 625, 1186
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	7 cut(s)	39, 95, 143, 296, 587, 1166, 1245
BfuAI	ACCTGC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	908
BisI	GCNGC	4 cut(s)	426, 429, 1024, 1242
BlsI	GCNGC	4 cut(s)	427, 430, 1025, 1243
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	933
Bme18I	GGWCC	3 cut(s)	62, 83, 928
BmeRI	GACNNNNNGTC	1 cut(s)	375
BmgT120I	GGNCC	4 cut(s)	62, 83, 839, 928
BmiI	GGNNCC	4 cut(s)	6, 892, 930, 1159
BmrFI	CCNGG	1 cut(s)	933
BmrI	ACTGGG	2 cut(s)	325, 1023
BmsI	GCATC	3 cut(s)	35, 1159, 1247
BmuI	ACTGGG	2 cut(s)	325, 1023
BpiI	GAAGAC	2 cut(s)	832, 875
BplI	GAGNNNNNCTC	2 cut(s)	934, 966
BpmI	CTGGAG	1 cut(s)	1176
Bpu14I	TTCGAA	1 cut(s)	504
BpuEI	CTTGAG	4 cut(s)	182, 836, 1007, 1028
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	571, 689, 931, 1173
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	658, 836, 880, 1203
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	5 cut(s)	280, 331, 349, 786, 1018
Bse3DI	GCAATG	4 cut(s)	159, 535, 1033, 1191
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	4 cut(s)	571, 689, 931, 1173
BseLI	CCNNNNNNNGG	4 cut(s)	658, 836, 880, 1203
BseMI	GCAATG	4 cut(s)	159, 535, 1033, 1191
BseNI	ACTGG	5 cut(s)	280, 331, 349, 786, 1018
BseXI	GCAGC	4 cut(s)	412, 415, 1035, 1253
BshFI	GGCC	4 cut(s)	93, 111, 467, 841
BshNI	GGYRCC	1 cut(s)	890
BsiSI	CCGG	2 cut(s)	451, 471
BslFI	GGGAC	2 cut(s)	113, 914
BslI	CCNNNNNNNGG	4 cut(s)	658, 836, 880, 1203
BsmAI	GTCTC	4 cut(s)	335, 362, 625, 1186
BsmFI	GGGAC	2 cut(s)	113, 914
BsnI	GGCC	4 cut(s)	93, 111, 467, 841
Bso31I	GGTCTC	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	190, 628, 908, 918
Bsp19I	CCATGG	1 cut(s)	1173
BspACI	CCGC	2 cut(s)	423, 431
BspANI	GGCC	4 cut(s)	93, 111, 467, 841
BspLI	GGNNCC	4 cut(s)	6, 892, 930, 1159
BspMI	ACCTGC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	4 cut(s)	159, 535, 1033, 1191
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	5 cut(s)	280, 331, 349, 786, 1018
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	4 cut(s)	571, 689, 931, 1173
BssMI	GATC	4 cut(s)	190, 628, 908, 918
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	689, 1173
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	2 cut(s)	346, 572
Bst6I	CTCTTC	2 cut(s)	510, 1220
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	3 cut(s)	109, 649, 759
BstDEI	CTNAG	1 cut(s)	821
BstDSI	CCRYGG	2 cut(s)	571, 1173
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	193, 631, 911, 921
BstMAI	GTCTC	4 cut(s)	335, 362, 625, 1186
BstMBI	GATC	4 cut(s)	190, 628, 908, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	931
BstV1I	GCAGC	4 cut(s)	412, 415, 1035, 1253
BstV2I	GAAGAC	2 cut(s)	832, 875
BstX2I	RGATCY	1 cut(s)	908
BstXI	CCANNNNNNTGG	1 cut(s)	1101
BstYI	RGATCY	1 cut(s)	908
BsuRI	GGCC	4 cut(s)	93, 111, 467, 841
BtgI	CCRYGG	2 cut(s)	571, 1173
BtgZI	GCGATG	1 cut(s)	1235
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	3 cut(s)	109, 649, 759
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	4 cut(s)	62, 83, 839, 928
Csp6I	GTAC	2 cut(s)	442, 584
CviAII	CATG	8 cut(s)	535, 539, 613, 680, 786, 953, 1038, 1174
CviQI	GTAC	2 cut(s)	442, 584
DdeI	CTNAG	1 cut(s)	821
DpnI	GATC	4 cut(s)	192, 630, 910, 920
DpnII	GATC	4 cut(s)	190, 628, 908, 918
DrdI	GACNNNNNNGTC	1 cut(s)	349
DriI	GACNNNNNGTC	1 cut(s)	375
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	510, 1220
Eam1105I	GACNNNNNGTC	1 cut(s)	375
EarI	CTCTTC	2 cut(s)	510, 1220
Eco130I	CCWWGG	2 cut(s)	689, 1173
Eco147I	AGGCCT	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	3 cut(s)	62, 83, 928
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRI	GAATTC	4 cut(s)	500, 1055, 1074, 1084
EcoRII	CCWGG	1 cut(s)	931
EcoT14I	CCWWGG	2 cut(s)	689, 1173
EcoT22I	ATGCAT	3 cut(s)	50, 540, 1262
ErhI	CCWWGG	2 cut(s)	689, 1173
FaeI	CATG	8 cut(s)	538, 542, 616, 683, 789, 956, 1041, 1177
FalI	AAGNNNNNCTT	8 cut(s)	15, 47, 609, 641, 817, 849, 1104, 1136
FaqI	GGGAC	2 cut(s)	113, 914
FatI	CATG	8 cut(s)	534, 538, 612, 679, 785, 952, 1037, 1173
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	426, 429, 1024, 1242
Fsp4HI	GCNGC	4 cut(s)	426, 429, 1024, 1242
FspBI	CTAG	7 cut(s)	39, 95, 143, 296, 587, 1166, 1245
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	426, 429, 1024, 1242
GsuI	CTGGAG	1 cut(s)	1176
HaeIII	GGCC	4 cut(s)	93, 111, 467, 841
HapII	CCGG	2 cut(s)	451, 471
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	8 cut(s)	538, 542, 616, 683, 789, 956, 1041, 1177
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	299, 936, 995, 1179
HpaII	CCGG	2 cut(s)	451, 471
HphI	GGTGA	3 cut(s)	67, 197, 926
Hpy166II	GTNNAC	2 cut(s)	711, 1137
Hpy188I	TCNGA	1 cut(s)	669
Hpy188III	TCNNGA	8 cut(s)	391, 626, 806, 853, 940, 986, 1065, 1155
Hpy8I	GTNNAC	2 cut(s)	711, 1137
HpyAV	CCTTC	5 cut(s)	96, 500, 663, 1044, 1064
HpyCH4III	ACNGT	2 cut(s)	346, 572
HpyCH4V	TGCA	7 cut(s)	48, 159, 538, 636, 647, 1241, 1260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	821
Hsp92II	CATG	8 cut(s)	538, 542, 616, 683, 789, 956, 1041, 1177
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	190, 628, 908, 918
LmnI	GCTCC	1 cut(s)	1157
Lsp1109I	GCAGC	4 cut(s)	412, 415, 1035, 1253
LweI	GCATC	3 cut(s)	35, 1159, 1247
MaeI	CTAG	7 cut(s)	39, 95, 143, 296, 587, 1166, 1245
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	4 cut(s)	192, 630, 910, 920
MboI	GATC	4 cut(s)	190, 628, 908, 918
MboII	GAAGA	5 cut(s)	527, 837, 880, 1223, 1237
MfeI	CAATTG	1 cut(s)	154
MflI	RGATCY	1 cut(s)	908
MlsI	TGGCCA	1 cut(s)	467
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	2 cut(s)	308, 1188
MmeI	TCCRAC	1 cut(s)	861
MnlI	CCTC	9 cut(s)	18, 218, 244, 378, 427, 936, 1139, 1171, 1221
Mox20I	TGGCCA	1 cut(s)	467
Mph1103I	ATGCAT	3 cut(s)	50, 540, 1262
MroXI	GAANNNNTTC	2 cut(s)	1074, 1088
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	53, 543
Msp20I	TGGCCA	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	451, 471
MspR9I	CCNGG	1 cut(s)	933
MunI	CAATTG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	933
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	1173
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	4 cut(s)	190, 628, 908, 918
NlaIII	CATG	8 cut(s)	538, 542, 616, 683, 789, 956, 1041, 1177
NlaIV	GGNNCC	4 cut(s)	6, 892, 930, 1159
NmuCI	GTSAC	1 cut(s)	545
NsiI	ATGCAT	3 cut(s)	50, 540, 1262
NspI	RCATGY	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	1074, 1088
PfeI	GAWTC	2 cut(s)	936, 995
PflMI	CCANNNNNTGG	1 cut(s)	1203
PkrI	GCNGC	4 cut(s)	427, 430, 1025, 1243
PleI	GAGTC	2 cut(s)	307, 1187
PpsI	GAGTC	2 cut(s)	307, 1187
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	931
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	4 cut(s)	6, 892, 930, 1159
PspPI	GGNCC	4 cut(s)	62, 83, 839, 928
PspPPI	RGGWCCY	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	908
RsaI	GTAC	2 cut(s)	443, 585
RsaNI	GTAC	2 cut(s)	442, 584
RseI	CAYNNNNRTG	2 cut(s)	53, 543
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	426, 429, 1024, 1242
Sau3AI	GATC	4 cut(s)	190, 628, 908, 918
Sau96I	GGNCC	4 cut(s)	62, 83, 839, 928
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	2 cut(s)	308, 1188
ScrFI	CCNGG	1 cut(s)	933
SfaNI	GCATC	3 cut(s)	35, 1159, 1247
SfuI	TTCGAA	1 cut(s)	504
SinI	GGWCC	3 cut(s)	62, 83, 928
SmiMI	CAYNNNNRTG	2 cut(s)	53, 543
SmlI	CTYRAG	4 cut(s)	197, 851, 986, 1043
SmoI	CTYRAG	4 cut(s)	197, 851, 986, 1043
SpeI	ACTAGT	1 cut(s)	586
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	423, 431
SspI	AATATT	1 cut(s)	795
SspMI	CTAG	7 cut(s)	39, 95, 143, 296, 587, 1166, 1245
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	931
StyI	CCWWGG	2 cut(s)	689, 1173
TaaI	ACNGT	2 cut(s)	346, 572
TaqI	TCGA	1 cut(s)	504
TatI	WGTACW	2 cut(s)	441, 583
TfiI	GAWTC	2 cut(s)	936, 995
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	4 cut(s)	425, 428, 1023, 1241
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	7 cut(s)	124, 274, 668, 752, 1026, 1068, 1077
Van91I	CCANNNNNTGG	1 cut(s)	1203
VpaK11BI	GGWCC	3 cut(s)	62, 83, 928
XapI	RAATTY	6 cut(s)	500, 604, 696, 1055, 1074, 1084
XceI	RCATGY	1 cut(s)	542
XmnI	GAANNNNTTC	2 cut(s)	1074, 1088
XspI	CTAG	7 cut(s)	39, 95, 143, 296, 587, 1166, 1245
ZrmI	AGTACT	1 cut(s)	585
Zsp2I	ATGCAT	3 cut(s)	50, 540, 1262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.