Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010170

Physical Location & Seq

Genomic Coordinates Forward (+)

2087182 .. 2089786

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTTTATCTTAGCGAGCTAGAACATTCACTAAGAGTGCCTCCGCATCTACTTAATCTCCCTCTCGAAGATGCCATTAAGTCAGTGCTTCAAAATGTGTTCTTGGACAAGGTTTTAGCTGATTTGGGGCTTTGTGTATCTATTTACGACATTAAATCAGTAGAAGGAGGGTTTGTGTTACCCGGTGATGGTGCTGCGACCTATAAGGTAGGTCTTAGAATTGTTGTGTTCCGTCCATTTGTTGGTGAGGTCATAGCTGCAAAGTTCAAAGAATCTGACGCCAATGGCTTGCGCTTAACACTTGGATTCTTTGACGATATTTATGTGCCTGCTCCACTTATGCCGAAACCCAACCGCTGTGAGCCTGACCCTTATAATAGGAAGCAAATGATATGGGTGTGGGAATATGGAGAACCGAAAGAAGACTATATTGTTGACGATGCCTGTCAGATCAAGTTTCGAGTAGAGAGCATCAGCTATCCATCAGTTCCAACTGAGCGAGCAGAGGACGCAAAGCCTTTTGCTCCAATGGTGGTCACTGGGAATATGGATGATGATGGTTTGGGTCCTGTTTCTTGGTGGGATTCTTATGAACAGGTTGATCAAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005694 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rbc25 SHS2_Rpb7-N

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

4.49

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHS2_Rpb7-N	PF03876	8 - 64	9.7e-16	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
RNA_pol_Rbc25	PF08292	83 - 170	9.8e-15	RNA polymerase III subunit Rpc25

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06790 AT1G06790
fragaria_vesca	FvH4_1g22880
malus_domestica	MD08G1227600.v1.1
prunus_persica	Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.7G016800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063451
rosa_laevigata	RLG00000022776 RLG00000035635
rosa_multiflora	Rmu_sc0016394.1_g000005
rosa_roxburghii	Rroxscaffold_1G00017270
rosa_rugosa	Rorug05G0357400
rosa_samantha	Rh5AG416500 Rh5BG431600 Rh5CG454900 Rh5DG445100
rosa_wichuraiana	Rw5G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	2 cut(s)	44, 355
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	188, 242
AgsI	TTSAA	2 cut(s)	92, 268
AluBI	AGCT	4 cut(s)	19, 119, 257, 477
AluI	AGCT	4 cut(s)	19, 119, 257, 477
ApeKI	GCWGC	2 cut(s)	194, 257
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	197, 257
AvaII	GGWCC	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	181, 244
BccI	CCATC	3 cut(s)	182, 490, 551
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	195, 258
BlsI	GCNGC	2 cut(s)	196, 259
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	4 cut(s)	55, 61, 430, 480
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 242
Bse1I	ACTGG	1 cut(s)	544
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	2 cut(s)	188, 242
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	181, 244
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	188, 242
Bsp143I	GATC	2 cut(s)	450, 601
BspACI	CCGC	2 cut(s)	44, 355
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	544
BssMI	GATC	2 cut(s)	450, 601
BssNI	GRCGYC	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	4 cut(s)	17, 290, 330, 501
BstDEI	CTNAG	4 cut(s)	11, 32, 215, 495
BstF5I	GGATG	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	453, 604
BstMBI	GATC	2 cut(s)	450, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	181, 244
BstV2I	GAAGAC	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	90, 537
Cac8I	GCNNGC	4 cut(s)	17, 290, 330, 501
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	566
CseI	GACGC	2 cut(s)	287, 518
CviJI	RGCY	8 cut(s)	19, 119, 130, 257, 288, 364, 477, 517
CviKI_1	RGCY	8 cut(s)	19, 119, 130, 257, 288, 364, 477, 517
DdeI	CTNAG	4 cut(s)	11, 32, 215, 495
DpnI	GATC	2 cut(s)	452, 603
DpnII	GATC	2 cut(s)	450, 601
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	566
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	195, 258
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	2 cut(s)	195, 258
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	195, 258
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	287, 518
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	272, 306, 584
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	197, 257
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	277, 450
Hpy188III	TCNNGA	2 cut(s)	65, 605
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	4 cut(s)	11, 32, 215, 495
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	450, 601
LmnI	GCTCC	2 cut(s)	337, 529
LpnPI	CCDG	7 cut(s)	196, 342, 378, 457, 525, 581, 582
Lsp1109I	GCAGC	2 cut(s)	181, 244
LweI	GCATC	4 cut(s)	55, 61, 430, 480
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	177, 535
MalI	GATC	2 cut(s)	452, 603
MboI	GATC	2 cut(s)	450, 601
MboII	GAAGA	2 cut(s)	80, 434
MluCI	AATT	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	5 cut(s)	51, 72, 161, 241, 499
MseI	TTAA	4 cut(s)	54, 78, 153, 296
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	450, 601
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	272, 306, 584
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	196, 259
PpuMI	RGGWCCY	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	566
PspPPI	RGGWCCY	1 cut(s)	566
SaqAI	TTAA	4 cut(s)	54, 78, 153, 296
SatI	GCNGC	2 cut(s)	195, 258
Sau3AI	GATC	2 cut(s)	450, 601
Sau96I	GGNCC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	183
SfaNI	GCATC	4 cut(s)	55, 61, 430, 480
SinI	GGWCC	1 cut(s)	566
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	44, 355
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	181
TaqI	TCGA	2 cut(s)	66, 460
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	272, 306, 584
Tru1I	TTAA	4 cut(s)	54, 78, 153, 296
Tru9I	TTAA	4 cut(s)	54, 78, 153, 296
TscAI	CASTG	2 cut(s)	90, 544
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	194, 257
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	606
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	90, 544
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	566
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.