Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010170

Physical Location & Seq

Genomic Coordinates Forward (+)

15902407 .. 15907146

Gene Structure 4740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G103200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTCTACCTCAGCCGAATTGAGCACACTCTGCGTCTGCCTCCCCATCTGCTTAGCCTTCGTCTAGAAGATGCAGTTAGAGGAGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATCGCCAACTTGGGACTTTGCATTTCTGTGCATAGTATCCAATCCATTAAGGATGGCTTTATCTTACCTAATGATGGTCATCCAACTTTTAGGGTGGAGTTCACACTGATTATGTTTCGTCCATTTGTGGGAGAGATAATTGTTGCAAAACTTAAAGAATCTACTGCAAATGGTTTACGTCTGTCCCTTGAATTTTTTGATGATATTTATGTACCTGTTCATCTTTTGCCTGTTCCATCCCATTCCGTGCCTGACCCAGGAAAGAGGGATAGAGTCATGTGGATATGGAAGTTTCCTGATTCAGATGAAGAACTTGTTATTGATGGGATAGACCAGATAAAATTCCAAGTTCACAGTGTGAACTTTCCTCCAATTCCAATTGAGCAGCCAGAAGACTCAAAACCATTTGCCCCTATGGTGGTTACAGGATCAATTGATTTTGATGGTTTGGGCCCTGTTTCGTGGTGGGTGGATGCAGAAGATAAGGATGAAGAACCTGAAGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005694 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rbc25 SHS2_Rpb7-N

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

4.7

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06790 AT1G06790
fragaria_vesca	FvH4_1g22880
malus_domestica	MD08G1227600.v1.1
prunus_persica	Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.2G103200_v2.0.a1 Prupe.7G016800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063451
rosa_laevigata	RLG00000022776 RLG00000035635
rosa_multiflora	Rmu_sc0016394.1_g000005
rosa_roxburghii	Rroxscaffold_1G00017270
rosa_rugosa	Rorug05G0357400
rosa_samantha	Rh5AG416500 Rh5BG431600 Rh5CG454900 Rh5DG445100
rosa_wichuraiana	Rw5G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	550, 611
AcsI	RAATTY	2 cut(s)	305, 455
AdeI	CACNNNGTG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	4 cut(s)	188, 242, 371, 532
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	2 cut(s)	88, 97
AluI	AGCT	2 cut(s)	88, 97
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	550, 611
AoxI	GGCC	1 cut(s)	565
ApaI	GGGCCC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	2 cut(s)	305, 455
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	565, 566
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	6 cut(s)	54, 161, 182, 358, 431, 551
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	500
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	565, 566
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	61, 577
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 242, 371, 532
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	5 cut(s)	172, 193, 350, 592, 607
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	188, 242, 371, 532
BseMII	CTCAG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	141, 283
BslI	CCNNNNNNNGG	4 cut(s)	188, 242, 371, 532
BsmFI	GGGAC	2 cut(s)	141, 283
BsnI	GGCC	1 cut(s)	567
Bsp120I	GGGCCC	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	27, 569
Bsp143I	GATC	2 cut(s)	542, 616
Bsp1720I	GCTNAGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	2 cut(s)	550, 611
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	542, 616
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	11, 53, 103
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	5 cut(s)	172, 193, 350, 592, 607
BstKTI	GATC	2 cut(s)	545, 619
BstMBI	GATC	2 cut(s)	542, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 94
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	567
BtsCI	GGATG	5 cut(s)	172, 193, 350, 592, 607
BtsIMutI	CAGTG	2 cut(s)	218, 475
Cfr13I	GGNCC	2 cut(s)	565, 566
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	391
CviJI	RGCY	7 cut(s)	15, 57, 88, 97, 171, 502, 567
CviKI_1	RGCY	7 cut(s)	15, 57, 88, 97, 171, 502, 567
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	3 cut(s)	11, 53, 103
DpnI	GATC	2 cut(s)	544, 618
DpnII	GATC	2 cut(s)	542, 616
DraIII	CACNNNGTG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	569
FaeI	CATG	1 cut(s)	394
FaiI	YATR	6 cut(s)	147, 227, 324, 392, 400, 530
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 155, 187
FaqI	GGGAC	2 cut(s)	141, 283
FatI	CATG	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	5 cut(s)	179, 180, 337, 599, 614
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	567
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	272, 387, 413, 509
Hpy166II	GTNNAC	4 cut(s)	216, 290, 466, 475
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	2 cut(s)	65, 410
Hpy8I	GTNNAC	4 cut(s)	216, 290, 466, 475
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	6 cut(s)	74, 135, 145, 260, 281, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 94
HpyF3I	CTNAG	3 cut(s)	11, 53, 103
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	542, 616
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	2 cut(s)	61, 577
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	544, 618
MboI	GATC	2 cut(s)	542, 616
MboII	GAAGA	5 cut(s)	80, 434, 518, 605, 617
MfeI	CAATTG	2 cut(s)	492, 546
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	2 cut(s)	27, 569
MluCI	AATT	7 cut(s)	18, 252, 305, 455, 486, 492, 546
MlyI	GAGTC	2 cut(s)	396, 503
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	20, 51, 74, 372, 492
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	162, 267, 622
MslI	CAYNNNNRTG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	2 cut(s)	492, 546
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	31, 94
NdeII	GATC	2 cut(s)	542, 616
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	272, 413
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	2 cut(s)	395, 503
PpsI	GAGTC	2 cut(s)	395, 503
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	567
PspOMI	GGGCCC	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	565, 566
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	162, 267, 622
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	2 cut(s)	542, 616
Sau96I	GGNCC	2 cut(s)	565, 566
SchI	GAGTC	2 cut(s)	396, 503
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	27, 569
SetI	ASST	8 cut(s)	12, 90, 99, 114, 184, 295, 331, 613
SfaNI	GCATC	2 cut(s)	61, 577
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	7 cut(s)	18, 252, 305, 455, 486, 492, 546
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	295
TasI	AATT	7 cut(s)	18, 252, 305, 455, 486, 492, 546
TfiI	GAWTC	2 cut(s)	272, 413
Tru1I	TTAA	3 cut(s)	162, 267, 622
Tru9I	TTAA	3 cut(s)	162, 267, 622
TscAI	CASTG	2 cut(s)	225, 475
TseI	GCWGC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	323, 435, 618
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	225, 475
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	305, 455
XbaI	TCTAGA	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.