Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020135

Physical Location & Seq

Genomic Coordinates Reverse (-)

2576984 .. 2580754

Gene Structure 3771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGCGGTGGATTCTCCCGCTGGAGTTATTATCATCGCCGCCGTGCTTTTACTTGCTGCGACAACCTTGGCCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATTGATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCATGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTCCGATCCGTTTCTCGTCGGGCTTTACTACACAAAGGTTAAACTTGGGACACCACCAAGAGAATTTAATGTTCAAATTGACACTGGAAGTGATGTTTTGTGGGTTAGCTGCACTTCCTGCAATGGCTGCCCCAAGACTAGCGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTCATCCTCAGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGAATCAGGCTGTTCTCCCAACAATCTCTGTTCCTATTCGTTTAAGTACGGTGATGGAAGTGGCACTTCTGGTTACTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTTGGCTATAAATTCCTCTGCTCCCTTTGTTTTTGGGTGTAGCAATTTACAATCTGGAGATTTACAGAGGCCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCAGTAATTTCTCAGCTTGCTGTGCAAGGACTCGCGCCACGAGTATTCTCGCATTGTCTGAAGGGAGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATCAAGAGGCCAGATACCGTCTATACTCCTCTTGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAACGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGATAATTGATACGGGAACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCAAGCTGTTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACCTATGAGAGTTACCAATGCTTTGAAATCACAGCTGGTGACGTTGATGTCTTTCCCCAAGTTAGTTTGAGCTTTGCTGGTGGTGCATCAATGGTCTTAGGACCCCGTGCATATCTTCAGATTTTTTCTAGTTCAGGAAGTTCAATATGGTGCATTGGTTTCCAGAGAATGTCTCATCGTCGTATAACAATTCTTGGTGATTTGGTTCTTAAAGACAAAGTGGTGGTCTACGATCTAGTTCGCCAACGTATTGGATGGGCAGAATACGACTGTTCTCTGGAGGTGAATGTTTCAGCATCAAGAGGAGGACGAAGCAAAGACGTTATAAACACAGGACAATGGAGAGAAAGCGGTTCGGAGAGTTTTAATAGAAGTTATTACTTGTTACAACTAGTAGTCTTCCTTGTCCACCTTTTTGCTCGTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_N

Protein Analysis

492

Amino Acids

52.99

Weight (kDa)

5.73

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	118 - 302	4e-42	Xylanase inhibitor N-terminal
Asp	PF00026	118 - 471	2.2e-34	Eukaryotic aspartyl protease
TAXi_C	PF14541	319 - 470	1e-23	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08210 AT1G08210 AT1G08210 AT1G08210 AT3G42550
rosa_multiflora	Rmu_sc0003805.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	858, 1373
AasI	GACNNNNNNGTC	1 cut(s)	1094
Acc36I	ACCTGC	1 cut(s)	876
AccI	GTMKAC	1 cut(s)	1275
AccII	CGCG	2 cut(s)	86, 737
AciI	CCGC	9 cut(s)	5, 18, 39, 75, 86, 113, 195, 777, 1398
AclWI	GGATC	3 cut(s)	224, 389, 902
AcsI	RAATTY	4 cut(s)	287, 375, 454, 595
AcuI	CTGAAG	2 cut(s)	782, 1148
AcyI	GRCGYC	1 cut(s)	1039
AfaI	GTAC	3 cut(s)	512, 583, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	194, 218
AgsI	TTSAA	4 cut(s)	299, 380, 1073, 1191
AhlI	ACTAGT	1 cut(s)	1438
AjnI	CCWGG	1 cut(s)	397
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	189, 1224
AlwI	GGATC	3 cut(s)	224, 389, 902
AoxI	GGCC	3 cut(s)	69, 653, 812
ApeKI	GCWGC	3 cut(s)	56, 333, 351
ApoI	RAATTY	4 cut(s)	287, 375, 454, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	1257, 1289
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	1 cut(s)	1148
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	5 cut(s)	527, 947, 1097, 1256, 1342
AvaII	GGWCC	1 cut(s)	1148
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	1438
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	43, 320, 338
BccI	CCATC	7 cut(s)	212, 512, 665, 850, 919, 932, 1296
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	189, 1224
BcuI	ACTAGT	1 cut(s)	1438
BfaI	CTAG	6 cut(s)	363, 657, 797, 1176, 1283, 1439
BfmI	CTRYAG	1 cut(s)	869
BfuAI	ACCTGC	1 cut(s)	876
BisI	GCNGC	5 cut(s)	39, 57, 76, 334, 352
BlsI	GCNGC	5 cut(s)	40, 58, 77, 335, 353
Bme1390I	CCNGG	2 cut(s)	212, 399
Bme18I	GGWCC	1 cut(s)	1148
BmgT120I	GGNCC	1 cut(s)	1148
BmiI	GGNNCC	3 cut(s)	79, 223, 1150
BmrFI	CCNGG	2 cut(s)	212, 399
BmsI	GCATC	3 cut(s)	684, 1142, 1352
BpiI	GAAGAC	1 cut(s)	1438
BplI	GAGNNNNNCTC	2 cut(s)	1204, 1236
BpmI	CTGGAG	5 cut(s)	42, 119, 420, 660, 1346
Bpu10I	CCTNAGC	2 cut(s)	143, 412
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	1039
BsaJI	CCNNGG	3 cut(s)	66, 166, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 218
Bse1I	ACTGG	3 cut(s)	313, 579, 937
Bse3DI	GCAATG	2 cut(s)	352, 876
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	66, 166, 585
BseGI	GGATG	3 cut(s)	407, 1002, 1307
BseLI	CCNNNNNNNGG	2 cut(s)	194, 218
BseMI	GCAATG	2 cut(s)	352, 876
BseMII	CTCAG	5 cut(s)	129, 157, 426, 561, 728
BseNI	ACTGG	3 cut(s)	313, 579, 937
BseRI	GAGGAG	2 cut(s)	822, 1365
BseXI	GCAGC	3 cut(s)	43, 320, 338
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	86, 737
BshFI	GGCC	3 cut(s)	71, 655, 814
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	286, 1026
BslI	CCNNNNNNNGG	2 cut(s)	194, 218
BsmAI	GTCTC	2 cut(s)	189, 1224
BsmFI	GGGAC	2 cut(s)	286, 1026
BsnI	GGCC	3 cut(s)	71, 655, 814
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	229, 394, 907, 1279
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	9 cut(s)	5, 18, 39, 75, 86, 113, 195, 777, 1398
BspANI	GGCC	3 cut(s)	71, 655, 814
BspCNI	CTCAG	5 cut(s)	130, 156, 425, 560, 727
BspFNI	CGCG	2 cut(s)	86, 737
BspLI	GGNNCC	3 cut(s)	79, 223, 1150
BspMAI	CTGCAG	1 cut(s)	873
BspMI	ACCTGC	1 cut(s)	876
BspPI	GGATC	3 cut(s)	224, 389, 902
BspQI	GCTCTTC	1 cut(s)	655
BsrDI	GCAATG	2 cut(s)	352, 876
BsrI	ACTGG	3 cut(s)	313, 579, 937
BssECI	CCNNGG	3 cut(s)	66, 166, 585
BssMI	GATC	4 cut(s)	229, 394, 907, 1279
BssNI	GRCGYC	1 cut(s)	1039
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	3 cut(s)	66, 166, 585
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	515, 571, 823, 890, 1319
Bst6I	CTCTTC	1 cut(s)	655
BstACI	GRCGYC	1 cut(s)	1039
BstAPI	GCANNNNNTGC	2 cut(s)	342, 351
BstC8I	GCNNGC	3 cut(s)	73, 163, 720
BstDEI	CTNAG	7 cut(s)	138, 143, 383, 412, 547, 714, 1144
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	407, 1002, 1307
BstFNI	CGCG	2 cut(s)	86, 737
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	4 cut(s)	232, 397, 910, 1282
BstMAI	GTCTC	2 cut(s)	189, 1224
BstMBI	GATC	4 cut(s)	229, 394, 907, 1279
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 351, 724, 1036, 1130
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	210, 397
BstSFI	CTRYAG	1 cut(s)	869
BstUI	CGCG	2 cut(s)	86, 737
BstV1I	GCAGC	3 cut(s)	43, 320, 338
BstV2I	GAAGAC	1 cut(s)	1438
BstXI	CCANNNNNNTGG	3 cut(s)	128, 586, 1298
BsuRI	GGCC	3 cut(s)	71, 655, 814
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	407, 1002, 1307
BtsIMutI	CAGTG	2 cut(s)	306, 930
BveI	ACCTGC	1 cut(s)	876
Cac8I	GCNNGC	3 cut(s)	73, 163, 720
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	1148
CseI	GACGC	2 cut(s)	92, 1028
Csp6I	GTAC	3 cut(s)	511, 582, 1033
CviAII	CATG	4 cut(s)	122, 167, 429, 556
CviQI	GTAC	3 cut(s)	511, 582, 1033
DdeI	CTNAG	7 cut(s)	138, 143, 383, 412, 547, 714, 1144
DpnI	GATC	4 cut(s)	231, 396, 909, 1281
DpnII	GATC	4 cut(s)	229, 394, 907, 1279
DrdI	GACNNNNNNGTC	1 cut(s)	1094
DseDI	GACNNNNNNGTC	1 cut(s)	1094
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
EciI	GGCGGA	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	66, 166, 585
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	1148
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	782, 1148
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	1148
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	3 cut(s)	66, 166, 585
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	3 cut(s)	66, 166, 585
FaeI	CATG	4 cut(s)	125, 170, 432, 559
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	2 cut(s)	286, 1026
FatI	CATG	4 cut(s)	121, 166, 428, 555
FauI	CCCGC	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	1275
Fnu4HI	GCNGC	5 cut(s)	39, 57, 76, 334, 352
FokI	GGATG	3 cut(s)	394, 989, 1314
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	5 cut(s)	39, 57, 76, 334, 352
FspBI	CTAG	6 cut(s)	363, 657, 797, 1176, 1283, 1439
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	5 cut(s)	39, 57, 76, 334, 352
GsuI	CTGGAG	5 cut(s)	42, 119, 420, 660, 1346
HaeIII	GGCC	3 cut(s)	71, 655, 814
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	2 cut(s)	92, 1028
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	1039
Hin1II	CATG	4 cut(s)	125, 170, 432, 559
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HindIII	AAGCTT	1 cut(s)	987
HinfI	GANTC	6 cut(s)	11, 109, 155, 467, 732, 964
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	5 cut(s)	527, 947, 1097, 1256, 1342
Hpy166II	GTNNAC	4 cut(s)	865, 886, 1276, 1456
Hpy188I	TCNGA	9 cut(s)	82, 135, 229, 436, 550, 762, 894, 1167, 1405
Hpy188III	TCNNGA	8 cut(s)	460, 639, 808, 980, 1182, 1210, 1325, 1347
Hpy8I	GTNNAC	4 cut(s)	865, 886, 1276, 1456
Hpy99I	CGWCG	4 cut(s)	86, 245, 986, 1230
HpyAV	CCTTC	2 cut(s)	165, 757
HpyCH4III	ACNGT	5 cut(s)	515, 571, 823, 890, 1319
HpyCH4IV	ACGT	3 cut(s)	1089, 1294, 1368
HpyCH4V	TGCA	9 cut(s)	181, 336, 345, 727, 871, 1016, 1133, 1157, 1200
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 351, 724, 1036, 1130
HpyF3I	CTNAG	7 cut(s)	138, 143, 383, 412, 547, 714, 1144
HpySE526I	ACGT	3 cut(s)	1089, 1294, 1368
Hsp92I	GRCGYC	1 cut(s)	1039
Hsp92II	CATG	4 cut(s)	125, 170, 432, 559
HspAI	GCGC	1 cut(s)	737
Kzo9I	GATC	4 cut(s)	229, 394, 907, 1279
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	3 cut(s)	83, 221, 610
Lsp1109I	GCAGC	3 cut(s)	43, 320, 338
LweI	GCATC	3 cut(s)	684, 1142, 1352
MaeI	CTAG	6 cut(s)	363, 657, 797, 1176, 1283, 1439
MaeII	ACGT	3 cut(s)	1089, 1294, 1368
MaeIII	GTNAC	5 cut(s)	446, 536, 1058, 1085, 1431
MalI	GATC	4 cut(s)	231, 396, 909, 1281
MboI	GATC	4 cut(s)	229, 394, 907, 1279
MboII	GAAGA	4 cut(s)	672, 968, 1154, 1438
MhlI	GDGCHC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	726, 958
MmeI	TCCRAC	1 cut(s)	105
MseI	TTAA	6 cut(s)	204, 264, 291, 507, 1257, 1413
MslI	CAYNNNNRTG	2 cut(s)	858, 881
MspA1I	CMGCKG	2 cut(s)	20, 1082
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	212, 399
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	2 cut(s)	86, 737
MwoI	GCNNNNNNNGC	5 cut(s)	342, 351, 724, 1036, 1130
NciI	CCSGG	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	229, 394, 907, 1279
NlaIII	CATG	4 cut(s)	125, 170, 432, 559
NlaIV	GGNNCC	3 cut(s)	79, 223, 1150
NmuCI	GTSAC	1 cut(s)	1085
PceI	AGGCCT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	655
PfeI	GAWTC	4 cut(s)	11, 109, 155, 467
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	40, 58, 77, 335, 353
PleI	GAGTC	2 cut(s)	726, 958
PpsI	GAGTC	2 cut(s)	726, 958
PpuMI	RGGWCCY	1 cut(s)	1148
PsiI	TTATAA	2 cut(s)	858, 1373
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	1148
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	79, 223, 1150
PspPI	GGNCC	1 cut(s)	1148
PspPPI	RGGWCCY	1 cut(s)	1148
PstI	CTGCAG	1 cut(s)	873
PvuII	CAGCTG	1 cut(s)	1082
RsaI	GTAC	3 cut(s)	512, 583, 1034
RsaNI	GTAC	3 cut(s)	511, 582, 1033
RseI	CAYNNNNRTG	2 cut(s)	858, 881
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	6 cut(s)	204, 264, 291, 507, 1257, 1413
SatI	GCNGC	5 cut(s)	39, 57, 76, 334, 352
Sau3AI	GATC	4 cut(s)	229, 394, 907, 1279
Sau96I	GGNCC	1 cut(s)	1148
SchI	GAGTC	2 cut(s)	726, 958
ScrFI	CCNGG	2 cut(s)	212, 399
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	684, 1142, 1352
SfcI	CTRYAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	1148
SmiMI	CAYNNNNRTG	2 cut(s)	858, 881
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SpeI	ACTAGT	1 cut(s)	1438
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	9 cut(s)	5, 18, 39, 75, 86, 113, 195, 777, 1398
SspMI	CTAG	6 cut(s)	363, 657, 797, 1176, 1283, 1439
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	2 cut(s)	210, 397
StyI	CCWWGG	3 cut(s)	66, 166, 585
TaaI	ACNGT	5 cut(s)	515, 571, 823, 890, 1319
TaiI	ACGT	3 cut(s)	1092, 1297, 1371
TauI	GCSGC	2 cut(s)	41, 78
TfiI	GAWTC	4 cut(s)	11, 109, 155, 467
Tru1I	TTAA	6 cut(s)	204, 264, 291, 507, 1257, 1413
Tru9I	TTAA	6 cut(s)	204, 264, 291, 507, 1257, 1413
TscAI	CASTG	2 cut(s)	313, 937
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	3 cut(s)	56, 333, 351
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	5 cut(s)	138, 408, 417, 544, 991
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	313, 937
VpaK11BI	GGWCC	1 cut(s)	1148
XapI	RAATTY	4 cut(s)	287, 375, 454, 595
XmiI	GTMKAC	1 cut(s)	1275
XspI	CTAG	6 cut(s)	363, 657, 797, 1176, 1283, 1439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.