Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020135

Physical Location & Seq

Genomic Coordinates Reverse (-)

14665728 .. 14669135

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G42550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAGGCAAGGTATTATGAGGTTGATCATCGCTGCCATCTTTGTCATGGTATGCGGCTACGAGGCGACGGTTCTTCCGCTGAAGAGGATGATTCCGCCGAGCCATGAACTCGACCTCACTCAGCTTATGACATTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACTGGAAAGTTGAAAGAGACACTAGTATACTTCTCTCAGCGCTTTACTACACAACAGTACAAATTGGGACACCTCCAAGAGAGTTGGATGTGGTAATTGACACGGGAAGTGATCTTGTATGGGTTAGCTGCAATTCCTGCGTCGGCTGCCCGCTCCATAATGTTACTTTCTTCGATCCTGGAGCCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTCCTCGGATCTACAGAAGAAATCCCGTTGTTCGCTACTTGAAAGTTGTACCTACAAGGTGGAGTACGGTGATGGAAGTGTAACCTCCGGCTACTACATATCAGATCTCATTTCTTTCGATACTATGTCCGACTGGACTTATATCGCATTCAGAGACAACAGTACATGGCATCCTTGGGTTAGGCAAGGGGCGATTATCGGTACTTTCCCAGCTTTATGCTCAACGCCTTGCTCCACAGTGAGTTCTCAACCCTTATACTATAATCCTCAATTCTCTCATATGATGACCGTTGCTGTGAATGATCTGAGGCTACCGATTGATCCATCTGTTTTCTCAGTAGCAAAGGGTTATGGCACGATAATTGATTCAGGGACAACTCTTGTTCATTTTCCAGGTGAAGCTTATGATCCACTCATCCAAGCTATTTTAAATGTTGTTTCACAGTATGGGCGTCCCATTCCCTATGAGAGTTTCCAGTGCTTCAATATCACATCTGGGATAAGTTCCCATCTAGTCATCGCGGACATGTTTCCTGAAGTTCATTTGGGCTTCGCCGGCGGTGCATCCATGGTCATTAAACCTGAGGCGTATCTTTTTCAGAAGTTTCTAGACTTAACAAATGCAATCTGGTGCCTTGGTTTCTACAGTTCGACGAGTCGTCGTATAACAATTATCGGCGAAGTGGCTATTAGAGACAAAATGTTCGTCTATGATCTTGATCATCAACGGATCGGATGGGCAGAATACAATTGCTCGTTGGATGTGACAAGAGCACAGCAGAACAAAGACATAACAAACACAAAGCATTCGACAGGCAACAGTGGGAAGACTTGTAGTTACTTGGCTATTATTACATATCTACTCCATTTCTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_N

Protein Analysis

430

Amino Acids

47.88

Weight (kDa)

6.17

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	78 - 181	3.3e-11	Eukaryotic aspartyl protease
TAXi_N	PF14543	78 - 181	1.5e-24	Xylanase inhibitor N-terminal
TAXi_C	PF14541	234 - 385	1.5e-20	Xylanase inhibitor C-terminal
Asp	PF00026	243 - 386	1.3e-10	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08210 AT1G08210 AT1G08210 AT1G08210 AT3G42550
rosa_multiflora	Rmu_sc0003805.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1044
AccBSI	CCGCTC	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	214
AccII	CGCG	1 cut(s)	935
AciI	CCGC	6 cut(s)	54, 77, 95, 338, 935, 972
AclWI	GGATC	6 cut(s)	187, 356, 429, 728, 815, 1151
AcuI	CTGAAG	2 cut(s)	101, 969
AcyI	GRCGYC	1 cut(s)	865
AfaI	GTAC	6 cut(s)	174, 246, 463, 479, 577, 616
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	939
AgsI	TTSAA	4 cut(s)	187, 200, 455, 898
AhdI	GACNNNNNGTC	1 cut(s)	1071
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	364, 805
AluBI	AGCT	7 cut(s)	124, 315, 383, 391, 626, 815, 836
AluI	AGCT	7 cut(s)	124, 315, 383, 391, 626, 815, 836
Alw21I	GWGCWC	1 cut(s)	1189
Alw26I	GTCTC	4 cut(s)	171, 198, 561, 1101
AlwI	GGATC	6 cut(s)	187, 356, 429, 728, 815, 1151
Aor51HI	AGCGCT	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	32, 315, 333
ArsI	GACNNNNNNTTYG	4 cut(s)	1100, 1104, 1132, 1136
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	494, 821
AxyI	CCTNAGG	1 cut(s)	996
BanI	GGYRCC	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	1247
Bbv12I	GWGCWC	1 cut(s)	1189
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	19, 302, 320
BccI	CCATC	5 cut(s)	44, 479, 745, 930, 1143
BciT130I	CCWGG	2 cut(s)	366, 807
BclI	TGATCA	2 cut(s)	24, 1132
BcoDI	GTCTC	4 cut(s)	171, 198, 561, 1101
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	4 cut(s)	210, 926, 1022, 1291
BfmI	CTRYAG	2 cut(s)	425, 1057
BfoI	RGCGCY	1 cut(s)	230
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	4 cut(s)	33, 55, 316, 334
BlsI	GCNGC	4 cut(s)	34, 56, 317, 335
Bme1390I	CCNGG	2 cut(s)	366, 807
BmeRI	GACNNNNNGTC	1 cut(s)	1071
BmiI	GGNNCC	2 cut(s)	370, 1046
BmrFI	CCNGG	2 cut(s)	366, 807
BmsI	GCATC	2 cut(s)	592, 986
BpiI	GAAGAC	1 cut(s)	1247
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	1131
BsaHI	GRCGYC	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	417, 587, 981, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	3 cut(s)	194, 551, 889
Bse21I	CCTNAGG	1 cut(s)	996
Bse8I	GATNNNNATC	1 cut(s)	1131
BseBI	CCWGG	2 cut(s)	366, 807
BseDI	CCNNGG	4 cut(s)	417, 587, 981, 1048
BseGI	GGATG	8 cut(s)	93, 280, 374, 583, 828, 977, 1154, 1180
BseJI	GATNNNNATC	1 cut(s)	1131
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	6 cut(s)	134, 237, 393, 710, 762, 987
BseNI	ACTGG	3 cut(s)	194, 551, 889
BseXI	GCAGC	3 cut(s)	19, 302, 320
BseYI	CCCAGC	1 cut(s)	622
Bsh1236I	CGCG	1 cut(s)	935
BshNI	GGYRCC	1 cut(s)	1044
BsiHKAI	GWGCWC	1 cut(s)	1189
BsiSI	CCGG	2 cut(s)	501, 969
BslFI	GGGAC	3 cut(s)	268, 799, 852
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	4 cut(s)	171, 198, 561, 1101
BsmFI	GGGAC	3 cut(s)	268, 799, 852
BsmI	GAATGC	2 cut(s)	560, 1219
Bsp1286I	GDGCHC	1 cut(s)	1189
Bsp1407I	TGTACA	1 cut(s)	172
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	6 cut(s)	54, 77, 95, 338, 935, 972
BspCNI	CTCAG	6 cut(s)	133, 236, 392, 711, 761, 988
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	2 cut(s)	370, 1046
BspPI	GGATC	6 cut(s)	187, 356, 429, 728, 815, 1151
BspT107I	GGYRCC	1 cut(s)	1044
BsrBI	CCGCTC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	968
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	194, 551, 889
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	4 cut(s)	417, 587, 981, 1048
BssNAI	GTATAC	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	865
BssT1I	CCWWGG	3 cut(s)	587, 981, 1048
Bst1107I	GTATAC	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	366, 807
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	865
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	338, 393, 970
BstDEI	CTNAG	6 cut(s)	120, 223, 379, 719, 748, 996
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	8 cut(s)	93, 280, 374, 583, 828, 977, 1154, 1180
BstFNI	CGCG	1 cut(s)	935
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstMAI	GTCTC	4 cut(s)	171, 198, 561, 1101
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 333, 969, 974
BstNI	CCWGG	2 cut(s)	366, 807
BstNSI	RCATGY	2 cut(s)	399, 943
BstSCI	CCNGG	2 cut(s)	364, 805
BstSFI	CTRYAG	2 cut(s)	425, 1057
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	3 cut(s)	19, 302, 320
BstV2I	GAAGAC	1 cut(s)	1247
BstX2I	RGATCY	3 cut(s)	179, 421, 517
BstYI	RGATCY	3 cut(s)	179, 421, 517
BstZ17I	GTATAC	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	996
BtgI	CCRYGG	1 cut(s)	981
BtgZI	GCGATG	2 cut(s)	13, 916
BtsCI	GGATG	8 cut(s)	93, 280, 374, 583, 828, 977, 1154, 1180
BtsIMutI	CAGTG	3 cut(s)	657, 896, 1240
Cac8I	GCNNGC	3 cut(s)	338, 393, 970
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	968
CseI	GACGC	2 cut(s)	316, 854
Csp6I	GTAC	6 cut(s)	173, 245, 462, 478, 576, 615
CviAII	CATG	7 cut(s)	46, 104, 149, 396, 579, 940, 982
CviQI	GTAC	6 cut(s)	173, 245, 462, 478, 576, 615
DdeI	CTNAG	6 cut(s)	120, 223, 379, 719, 748, 996
DraI	TTTAAA	1 cut(s)	843
DriI	GACNNNNNGTC	1 cut(s)	1071
Eam1104I	CTCTTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	587, 981, 1048
Eco47III	AGCGCT	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	101, 969
Eco81I	CCTNAGG	1 cut(s)	996
EcoRII	CCWGG	2 cut(s)	364, 805
EcoT14I	CCWWGG	3 cut(s)	587, 981, 1048
ErhI	CCWWGG	3 cut(s)	587, 981, 1048
FaeI	CATG	7 cut(s)	49, 107, 152, 399, 582, 943, 985
FaqI	GGGAC	3 cut(s)	268, 799, 852
FatI	CATG	7 cut(s)	45, 103, 148, 395, 578, 939, 981
FauI	CCCGC	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	693
FbaI	TGATCA	2 cut(s)	24, 1132
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	33, 55, 316, 334
FokI	GGATG	8 cut(s)	100, 287, 361, 570, 815, 964, 1161, 1187
Fsp4HI	GCNGC	4 cut(s)	33, 55, 316, 334
FspBI	CTAG	4 cut(s)	210, 926, 1022, 1291
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	33, 55, 316, 334
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	230
HapII	CCGG	2 cut(s)	501, 969
HgaI	GACGC	2 cut(s)	316, 854
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	865
Hin1II	CATG	7 cut(s)	49, 107, 152, 399, 582, 943, 985
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	813
HinfI	GANTC	4 cut(s)	91, 137, 779, 1069
HpaII	CCGG	2 cut(s)	501, 969
HphI	GGTGA	2 cut(s)	494, 821
Hpy166II	GTNNAC	2 cut(s)	175, 215
Hpy188I	TCNGA	8 cut(s)	403, 421, 517, 544, 566, 720, 1014, 1148
Hpy188III	TCNNGA	3 cut(s)	947, 1022, 1130
Hpy8I	GTNNAC	2 cut(s)	175, 215
Hpy99I	CGWCG	4 cut(s)	70, 332, 1069, 1077
HpyAV	CCTTC	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	318, 977, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 333, 969, 974
HpyF3I	CTNAG	6 cut(s)	120, 223, 379, 719, 748, 996
Hsp92I	GRCGYC	1 cut(s)	865
Hsp92II	CATG	7 cut(s)	49, 107, 152, 399, 582, 943, 985
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	968
KroNI	GCCGGC	1 cut(s)	970
Ksp22I	TGATCA	2 cut(s)	24, 1132
LmnI	GCTCC	3 cut(s)	345, 368, 650
Lsp1109I	GCAGC	3 cut(s)	19, 302, 320
LweI	GCATC	2 cut(s)	592, 986
MaeI	CTAG	4 cut(s)	210, 926, 1022, 1291
MaeIII	GTNAC	5 cut(s)	159, 349, 493, 1177, 1250
MbiI	CCGCTC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	65, 94, 349, 442, 1252
MfeI	CAATTG	1 cut(s)	1162
MflI	RGATCY	3 cut(s)	179, 421, 517
MhlI	GDGCHC	1 cut(s)	1189
MluCI	AATT	7 cut(s)	249, 282, 319, 683, 774, 1083, 1162
MlyI	GAGTC	1 cut(s)	1078
MmeI	TCCRAC	3 cut(s)	252, 567, 1152
MreI	CGCCGGCG	1 cut(s)	968
MroNI	GCCGGC	1 cut(s)	968
MseI	TTAA	3 cut(s)	842, 990, 1028
MspA1I	CMGCKG	2 cut(s)	79, 383
MspI	CCGG	2 cut(s)	501, 969
MspR9I	CCNGG	2 cut(s)	366, 807
MunI	CAATTG	1 cut(s)	1162
Mva1269I	GAATGC	2 cut(s)	560, 1219
MvaI	CCWGG	2 cut(s)	366, 807
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	4 cut(s)	324, 333, 969, 974
NaeI	GCCGGC	1 cut(s)	970
NcoI	CCATGG	1 cut(s)	981
NdeI	CATATG	1 cut(s)	693
NgoMIV	GCCGGC	1 cut(s)	968
NlaIII	CATG	7 cut(s)	49, 107, 152, 399, 582, 943, 985
NlaIV	GGNNCC	2 cut(s)	370, 1046
NmeAIII	GCCGAG	2 cut(s)	123, 124
NmuCI	GTSAC	1 cut(s)	1177
NspI	RCATGY	2 cut(s)	399, 943
PciI	ACATGT	1 cut(s)	939
PctI	GAATGC	2 cut(s)	560, 1219
PdiI	GCCGGC	1 cut(s)	970
PfeI	GAWTC	3 cut(s)	91, 137, 779
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	4 cut(s)	34, 56, 317, 335
PleI	GAGTC	1 cut(s)	1077
PpsI	GAGTC	1 cut(s)	1077
PscI	ACATGT	1 cut(s)	939
Psp6I	CCWGG	2 cut(s)	364, 805
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	2 cut(s)	364, 805
PspN4I	GGNNCC	2 cut(s)	370, 1046
PsuI	RGATCY	3 cut(s)	179, 421, 517
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	6 cut(s)	174, 246, 463, 479, 577, 616
RsaNI	GTAC	6 cut(s)	173, 245, 462, 478, 576, 615
SaqAI	TTAA	3 cut(s)	842, 990, 1028
SatI	GCNGC	4 cut(s)	33, 55, 316, 334
SchI	GAGTC	1 cut(s)	1078
ScrFI	CCNGG	2 cut(s)	366, 807
SduI	GDGCHC	1 cut(s)	1189
SfaNI	GCATC	2 cut(s)	592, 986
SfcI	CTRYAG	2 cut(s)	425, 1057
SgrAI	CRCCGGYG	1 cut(s)	968
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	7 cut(s)	249, 282, 319, 683, 774, 1083, 1162
SsiI	CCGC	6 cut(s)	54, 77, 95, 338, 935, 972
SspMI	CTAG	4 cut(s)	210, 926, 1022, 1291
StyD4I	CCNGG	2 cut(s)	364, 805
StyI	CCWWGG	3 cut(s)	587, 981, 1048
TaqI	TCGA	5 cut(s)	111, 360, 531, 1064, 1223
TasI	AATT	7 cut(s)	249, 282, 319, 683, 774, 1083, 1162
TatI	WGTACW	3 cut(s)	172, 244, 575
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	3 cut(s)	91, 137, 779
Tru1I	TTAA	3 cut(s)	842, 990, 1028
Tru9I	TTAA	3 cut(s)	842, 990, 1028
TscAI	CASTG	3 cut(s)	657, 896, 1240
TseFI	GTSAC	1 cut(s)	1177
TseI	GCWGC	3 cut(s)	32, 315, 333
Tsp45I	GTSAC	1 cut(s)	1177
TspDTI	ATGAA	3 cut(s)	120, 788, 944
TspGWI	ACGGA	2 cut(s)	192, 1156
TspRI	CASTG	3 cut(s)	657, 896, 1240
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	2 cut(s)	399, 943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	4 cut(s)	210, 926, 1022, 1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.