Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003805.1

Orthogroup ID

OG0020135

Physical Location & Seq

Genomic Coordinates Reverse (-)

90823 .. 92207

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003805.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgctcacagccacgctaaattatccaggttgcagagggagcaagactttgtggagctacaagaattatcggcgtggatggaaaaagtttggactcactgacttcgtcaaagccgcaaattctgagaataaatctgcgagcgaggtgataattgagatgactgacgggggtgcagattattgctttgaatgtgtgggaatggcatcagtggtgcaagaagcttatgcttgttgccggaagcgccatgtaagatgccaattttgtaaagtgacgaaaatgcccctactcttcattatttctctttacacccaaaatccaccacaaccgagctctccaccaccaccaccaccaccaccgagctctccactaccactaccaagctcaccatccaaaattaatccaccaccactaccaagctcttcttcaacttcaacttcggcgacgtcgtcttccgccatgaaaacagtcacactcactctcactctcacaacctcatgtcggagctttcttcttctcttactcctcctgatttccaccaacatcattgccggcgtcactcttgacaacgtcgtcttgagcgtcaagtacaaatacgccagccgcgaccccactctcagcgccctaaaagctcagacaccaaacccactcttcgatttctcgccggcgtggatctccctctcgactgcttcggcctccttgacgtcgtcgggggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

238

Amino Acids

25.57

Weight (kDa)

9.39

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08210 AT1G08210 AT1G08210 AT1G08210 AT3G42550
rosa_multiflora	Rmu_sc0003805.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AatII	GACGTC	2 cut(s)	446, 704
AccII	CGCG	1 cut(s)	603
AciI	CCGC	3 cut(s)	114, 453, 601
AclWI	GGATC	1 cut(s)	677
AcsI	RAATTY	1 cut(s)	118
AcyI	GRCGYC	3 cut(s)	443, 552, 701
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	188, 426, 432
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	8 cut(s)	57, 221, 330, 360, 381, 417, 504, 629
AluI	AGCT	8 cut(s)	57, 221, 330, 360, 381, 417, 504, 629
Alw21I	GWGCWC	2 cut(s)	332, 362
AlwI	GGATC	1 cut(s)	677
AoxI	GGCC	1 cut(s)	690
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	243, 620
AsuHPI	GGTGA	2 cut(s)	157, 375
BanII	GRGCYC	2 cut(s)	332, 362
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	332, 362
BccI	CCATC	2 cut(s)	72, 394
BciT130I	CCWGG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	244, 621
BisI	GCNGC	2 cut(s)	114, 601
BlsI	GCNGC	2 cut(s)	115, 602
Bme1390I	CCNGG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	212, 242
BpiI	GAAGAC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	595
BsaHI	GRCGYC	3 cut(s)	443, 552, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse118I	RCCGGY	2 cut(s)	548, 661
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	83, 386
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	114, 628, 644
BseRI	GAGGAG	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	692
BsiHKAI	GWGCWC	2 cut(s)	332, 362
BsiSI	CCGG	3 cut(s)	235, 549, 662
BslI	CCNNNNNNNGG	1 cut(s)	498
BsnI	GGCC	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	332, 362
Bsp143I	GATC	1 cut(s)	669
BspACI	CCGC	3 cut(s)	114, 453, 601
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	3 cut(s)	115, 627, 643
BspFNI	CGCG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	677
BspQI	GCTCTTC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	2 cut(s)	548, 661
BssAI	RCCGGY	2 cut(s)	548, 661
BssMI	GATC	1 cut(s)	669
BssNI	GRCGYC	3 cut(s)	443, 552, 701
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	293, 424, 653
BstACI	GRCGYC	3 cut(s)	443, 552, 701
BstC8I	GCNNGC	4 cut(s)	139, 550, 598, 663
BstDEI	CTNAG	3 cut(s)	123, 614, 630
BstF5I	GGATG	2 cut(s)	83, 386
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	2 cut(s)	244, 621
BstHHI	GCGC	2 cut(s)	243, 620
BstKTI	GATC	1 cut(s)	672
BstMBI	GATC	1 cut(s)	669
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 240, 626
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	692
BtsCI	GGATG	2 cut(s)	83, 386
BtsIMutI	CAGTG	2 cut(s)	96, 213
Cac8I	GCNNGC	4 cut(s)	139, 550, 598, 663
CfoI	GCGC	2 cut(s)	243, 620
Cfr10I	RCCGGY	2 cut(s)	548, 661
CseI	GACGC	2 cut(s)	541, 568
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	245, 457, 495
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	3 cut(s)	123, 614, 630
DpnI	GATC	1 cut(s)	671
DpnII	GATC	1 cut(s)	669
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	3 cut(s)	293, 424, 653
EarI	CTCTTC	3 cut(s)	293, 424, 653
EciI	GGCGGA	1 cut(s)	442
Ecl136II	GAGCTC	2 cut(s)	330, 360
Eco24I	GRGCYC	2 cut(s)	332, 362
Eco53kI	GAGCTC	2 cut(s)	330, 360
EcoICRI	GAGCTC	2 cut(s)	330, 360
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	2 cut(s)	332, 362
FaeI	CATG	3 cut(s)	248, 460, 498
FaiI	YATR	5 cut(s)	225, 246, 458, 496, 715
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FatI	CATG	3 cut(s)	244, 456, 494
Fnu4HI	GCNGC	2 cut(s)	114, 601
FokI	GGATG	2 cut(s)	90, 373
FriOI	GRGCYC	2 cut(s)	332, 362
Fsp4HI	GCNGC	2 cut(s)	114, 601
GlaI	GCGC	2 cut(s)	242, 619
GluI	GCNGC	2 cut(s)	114, 601
HaeII	RGCGCY	2 cut(s)	244, 621
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	3 cut(s)	235, 549, 662
HgaI	GACGC	2 cut(s)	541, 568
HhaI	GCGC	2 cut(s)	243, 620
Hin1I	GRCGYC	3 cut(s)	443, 552, 701
Hin1II	CATG	3 cut(s)	248, 460, 498
Hin6I	GCGC	2 cut(s)	241, 618
HinP1I	GCGC	2 cut(s)	241, 618
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	3 cut(s)	235, 549, 662
HphI	GGTGA	2 cut(s)	157, 375
Hpy188I	TCNGA	3 cut(s)	124, 501, 633
Hpy188III	TCNNGA	4 cut(s)	526, 560, 574, 679
Hpy99I	CGWCG	5 cut(s)	445, 448, 572, 706, 709
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	3 cut(s)	443, 567, 701
HpyCH4V	TGCA	3 cut(s)	33, 173, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 240, 626
HpyF3I	CTNAG	3 cut(s)	123, 614, 630
HpySE526I	ACGT	3 cut(s)	443, 567, 701
Hsp92I	GRCGYC	3 cut(s)	443, 552, 701
Hsp92II	CATG	3 cut(s)	248, 460, 498
HspAI	GCGC	2 cut(s)	241, 618
KroI	GCCGGC	2 cut(s)	548, 661
KroNI	GCCGGC	2 cut(s)	550, 663
Kzo9I	GATC	1 cut(s)	669
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	3 cut(s)	39, 54, 501
LpnPI	CCDG	7 cut(s)	12, 39, 248, 539, 562, 610, 675
LweI	GCATC	2 cut(s)	212, 242
MaeII	ACGT	3 cut(s)	443, 567, 701
MaeIII	GTNAC	3 cut(s)	268, 466, 553
MalI	GATC	1 cut(s)	671
MboI	GATC	1 cut(s)	669
MboII	GAAGA	7 cut(s)	280, 411, 414, 441, 500, 503, 640
MflI	RGATCY	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	332, 362
MluCI	AATT	6 cut(s)	19, 64, 118, 150, 257, 393
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	6 cut(s)	29, 136, 502, 533, 686, 703
MreI	CGCCGGCG	1 cut(s)	661
MroNI	GCCGGC	2 cut(s)	548, 661
MseI	TTAA	1 cut(s)	396
MspI	CCGG	3 cut(s)	235, 549, 662
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	3 cut(s)	39, 240, 626
NaeI	GCCGGC	2 cut(s)	550, 663
NdeII	GATC	1 cut(s)	669
NgoMIV	GCCGGC	2 cut(s)	548, 661
NlaIII	CATG	3 cut(s)	248, 460, 498
NmuCI	GTSAC	3 cut(s)	268, 466, 553
PciSI	GCTCTTC	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	3 cut(s)	443, 576, 600
PdiI	GCCGGC	2 cut(s)	550, 663
PflFI	GACNNNGTC	4 cut(s)	104, 445, 566, 703
PkrI	GCNGC	2 cut(s)	115, 602
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	332, 362
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	669
PsyI	GACNNNGTC	4 cut(s)	104, 445, 566, 703
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SacI	GAGCTC	2 cut(s)	332, 362
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	114, 601
Sau3AI	GATC	1 cut(s)	669
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	332, 362
SfaNI	GCATC	2 cut(s)	212, 242
SgrAI	CRCCGGYG	1 cut(s)	661
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	6 cut(s)	19, 64, 118, 150, 257, 393
SsiI	CCGC	3 cut(s)	114, 453, 601
SstI	GAGCTC	2 cut(s)	332, 362
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	3 cut(s)	446, 570, 704
TaqI	TCGA	2 cut(s)	651, 680
TasI	AATT	6 cut(s)	19, 64, 118, 150, 257, 393
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	2 cut(s)	116, 603
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	2 cut(s)	103, 213
TseFI	GTSAC	3 cut(s)	268, 466, 553
Tsp45I	GTSAC	3 cut(s)	268, 466, 553
TspDTI	ATGAA	2 cut(s)	280, 473
TspRI	CASTG	2 cut(s)	103, 213
Tth111I	GACNNNGTC	4 cut(s)	104, 445, 566, 703
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	118
ZraI	GACGTC	2 cut(s)	444, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.