AT1G12500

UAA transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016055
Physical Location & Seq
Reverse (-)
4263150 .. 4265156
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12500.1

Sequence Viewer

Length: 1086 bp
ATGGTTGAAGCTCAATCATGGACAACGCGGCGGATGAGCAATCCTAGATTCGACGCCGCCGCAACCGCCGCACCAACCATCGTAGACATCCCCGGAACACCACCACACTCCTCCGCTTCTTCACCACTCAAACCCTTCTTCCTCTCTTCCCCCACCGTATCACCAACAATCCTCACGGCGGCTATAATCGCCGCCTGGTTTGGCTCAAATATAGGAGTCCTCCTCTTAAACAAATACCTTCTCTTCTACTACGGTTTCCGTTACCCAATCTTCCTCACCATGACACACATGTTATCATGCGCCGCCTATAGCTCCGCCGTAATCAATATCGCCGGAATCGTGCCACGTCAGCACATCTTATCTCGCCGTCAGTTTCTAAAGATCCTCTCTTTGTCAGCGATCTTTTGTCTCTCCGTCGTCTGTGGCAACACTTCGCTACGTTATATCCCTGTTTCTTTTAATCAAGCTATTGGAGCTACGACGCCGTTTTTCACCGCCGTGTTCTCTTTTCTCATTACTTGTAAAACAGAGTCCACTGAAGTTTATTTAGCTCTTCTTCCGGTTGTCTCCGGCATCGTTCTTGCTTCTAACTCTGAACCTTCTTTTCATCTTTTTGGTTTCCTTATCTGTGTTGCTTCCACCGCCGGTAGAGCTCTCAAATCCGTCGTCCAGGGGATTATTCTGACGTCGGAATCGGAGAAGCTACATTCTATGAATCTTTTGCTATACATGGCTCCAATGGCGGCTTGTATCTTACTACCATTTACGCTATACATTGAAGGAAACGTTTTAAGAGTTCTAATCGAGAAAGCGAGGACGGATCCATTGATCATCTTCTTGTTAGCCGGGAATGCGACAGTGGCATATTTAGTGAATTTGACGAATTTCTTGGTGACAAAGCATACAAGTGCTCTCACATTGCAGGTTTTGGGGAACGGAAAAGCTGCGGTGGCTGCCGGAGTCTCGGTTTTGATATTTAGGAATCCGGTGACGGTGATGGGAATAGCCGGATTTGGTGTGACGATTATGGGTGTGGTTCTCTATAGCGAAGCTAGGAAGAGATCCAAATTGCTAAACCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

361

Amino Acids

38.92

Weight (kDa)

9.72

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 60 - 349 4.7e-47 Triose-phosphate Transporter family
UAA PF08449 88 - 350 6.3e-07 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12500
fragaria_vesca FvH4_5g01050
malus_domestica MD04G1075500.v1.1 MD06G1068400.v1.1
prunus_persica Prupe.5G084500_v2.0.a1
pyrus_communis pycom06g06640
rosa_chinensis RchiOBHm_Chr7g0200301
rosa_laevigata RLG00000003738
rosa_multiflora Rmu_sc0005350.1_g000003
rosa_roxburghii Rroxscaffold_3G00256170
rosa_rugosa Rorug07G0059000
rosa_samantha Rh7BG187100 Rh7CG194800 Rh7DG188400
rosa_wichuraiana Rw7G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 913
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 28
AclI AACGTT 1 cut(s) 786
AclWI GGATC 4 cut(s) 376, 815, 828, 1056
AcsI RAATTY 2 cut(s) 874, 883
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 3 cut(s) 54, 482, 686
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 2 cut(s) 8, 779
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 2 cut(s) 194, 669
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 9 cut(s) 11, 312, 467, 476, 551, 653, 703, 944, 1052
AluI AGCT 9 cut(s) 11, 312, 467, 476, 551, 653, 703, 944, 1052
Alw21I GWGCWC 2 cut(s) 655, 913
Alw26I GTCTC 3 cut(s) 413, 571, 967
AlwI GGATC 4 cut(s) 376, 815, 828, 1056
ApeKI GCWGC 2 cut(s) 944, 953
ApoI RAATTY 2 cut(s) 874, 883
ArsI GACNNNNNNTTYG 2 cut(s) 651, 683
AspLEI GCGC 1 cut(s) 302
AsuC2I CCSGG 2 cut(s) 93, 847
AsuHPI GGTGA 7 cut(s) 114, 153, 268, 484, 904, 1000, 1006
BamHI GGATCC 1 cut(s) 820
BanII GRGCYC 1 cut(s) 655
Bbv12I GWGCWC 2 cut(s) 655, 913
BbvI GCAGC 2 cut(s) 931, 940
BccI CCATC 2 cut(s) 86, 991
BceAI ACGGC 5 cut(s) 192, 302, 351, 469, 482
BciT130I CCWGG 2 cut(s) 196, 671
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 2 cut(s) 93, 847
BcoDI GTCTC 3 cut(s) 413, 571, 967
BfaI CTAG 2 cut(s) 45, 1053
BfmI CTRYAG 2 cut(s) 307, 1042
BfuAI ACCTGC 1 cut(s) 913
Bme1390I CCNGG 4 cut(s) 93, 196, 671, 847
BmgBI CACGTC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 735, 822
BmrFI CCNGG 4 cut(s) 93, 196, 671, 847
BmsI GCATC 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BpuMI CCSGG 2 cut(s) 93, 847
BsaHI GRCGYC 3 cut(s) 54, 482, 686
BsaJI CCNNGG 2 cut(s) 91, 670
BsaWI WCCGGW 2 cut(s) 559, 985
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 917
BseBI CCWGG 2 cut(s) 196, 671
BseDI CCNNGG 2 cut(s) 91, 670
BseGI GGATG 2 cut(s) 39, 87
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 917
BseRI GAGGAG 2 cut(s) 100, 212
BseXI GCAGC 2 cut(s) 931, 940
Bsh1236I CGCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 655, 913
BsiSI CCGG 9 cut(s) 93, 333, 560, 570, 645, 846, 957, 986, 1008
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 3 cut(s) 413, 571, 967
BsmI GAATGC 1 cut(s) 856
Bsp1286I GDGCHC 2 cut(s) 655, 913
Bsp143I GATC 5 cut(s) 381, 399, 820, 828, 1061
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 735, 822
BspMI ACCTGC 1 cut(s) 913
BspPI GGATC 4 cut(s) 376, 815, 828, 1056
BspQI GCTCTTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 917
BsrFI RCCGGY 1 cut(s) 644
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 2 cut(s) 91, 670
BssMI GATC 5 cut(s) 381, 399, 820, 828, 1061
BssNI GRCGYC 3 cut(s) 54, 482, 686
Bst2UI CCWGG 2 cut(s) 196, 671
Bst4CI ACNGT 4 cut(s) 157, 254, 859, 994
Bst6I CTCTTC 4 cut(s) 151, 248, 558, 1052
BstACI GRCGYC 3 cut(s) 54, 482, 686
BstF5I GGATG 2 cut(s) 39, 87
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 5 cut(s) 384, 402, 823, 831, 1064
BstMAI GTCTC 3 cut(s) 413, 571, 967
BstMBI GATC 5 cut(s) 381, 399, 820, 828, 1061
BstNI CCWGG 2 cut(s) 196, 671
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 4 cut(s) 91, 194, 669, 845
BstSFI CTRYAG 2 cut(s) 307, 1042
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 931, 940
BstX2I RGATCY 3 cut(s) 381, 820, 1061
BstYI RGATCY 3 cut(s) 381, 820, 1061
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 39, 87
BtsIMutI CAGTG 2 cut(s) 534, 864
BveI ACCTGC 1 cut(s) 913
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 644
CseI GACGC 2 cut(s) 62, 490
CviAII CATG 5 cut(s) 18, 280, 289, 297, 730
DpnI GATC 5 cut(s) 383, 401, 822, 830, 1063
DpnII GATC 5 cut(s) 381, 399, 820, 828, 1061
Eam1104I CTCTTC 4 cut(s) 151, 248, 558, 1052
EarI CTCTTC 4 cut(s) 151, 248, 558, 1052
EciI GGCGGA 2 cut(s) 46, 304
Ecl136II GAGCTC 1 cut(s) 653
Eco24I GRGCYC 1 cut(s) 655
Eco53kI GAGCTC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 194, 669
EcoT38I GRGCYC 1 cut(s) 655
FaeI CATG 5 cut(s) 21, 283, 292, 300, 733
FatI CATG 5 cut(s) 17, 279, 288, 296, 729
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 84
FokI GGATG 2 cut(s) 46, 74
FriOI GRGCYC 1 cut(s) 655
FspBI CTAG 2 cut(s) 45, 1053
GlaI GCGC 1 cut(s) 301
HapII CCGG 9 cut(s) 93, 333, 560, 570, 645, 846, 957, 986, 1008
HgaI GACGC 2 cut(s) 62, 490
HhaI GCGC 1 cut(s) 302
Hin1I GRCGYC 3 cut(s) 54, 482, 686
Hin1II CATG 5 cut(s) 21, 283, 292, 300, 733
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 8 cut(s) 48, 216, 336, 530, 692, 715, 960, 982
HpaII CCGG 9 cut(s) 93, 333, 560, 570, 645, 846, 957, 986, 1008
HphI GGTGA 7 cut(s) 114, 153, 268, 484, 904, 1000, 1006
Hpy166II GTNNAC 2 cut(s) 85, 534
Hpy188I TCNGA 4 cut(s) 595, 684, 691, 697
Hpy188III TCNNGA 1 cut(s) 805
Hpy8I GTNNAC 2 cut(s) 85, 534
Hpy99I CGWCG 5 cut(s) 56, 419, 484, 668, 691
HpyAV CCTTC 4 cut(s) 145, 248, 609, 773
HpyCH4III ACNGT 4 cut(s) 157, 254, 859, 994
HpyCH4IV ACGT 4 cut(s) 346, 439, 686, 786
HpyCH4V TGCA 1 cut(s) 922
HpySE526I ACGT 4 cut(s) 346, 439, 686, 786
Hsp92I GRCGYC 3 cut(s) 54, 482, 686
Hsp92II CATG 5 cut(s) 21, 283, 292, 300, 733
HspAI GCGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 5 cut(s) 381, 399, 820, 828, 1061
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 3 cut(s) 317, 473, 739
Lsp1109I GCAGC 2 cut(s) 931, 940
LweI GCATC 1 cut(s) 582
MaeI CTAG 2 cut(s) 45, 1053
MaeII ACGT 4 cut(s) 346, 439, 686, 786
MaeIII GTNAC 4 cut(s) 260, 892, 988, 1018
MalI GATC 5 cut(s) 383, 401, 822, 830, 1063
MboI GATC 5 cut(s) 381, 399, 820, 828, 1061
MboII GAAGA 9 cut(s) 111, 130, 138, 235, 262, 545, 548, 826, 1069
MflI RGATCY 3 cut(s) 381, 820, 1061
MhlI GDGCHC 2 cut(s) 655, 913
MluCI AATT 3 cut(s) 874, 883, 1067
MlyI GAGTC 3 cut(s) 225, 539, 969
MmeI TCCRAC 1 cut(s) 669
MnlI CCTC 8 cut(s) 121, 152, 182, 230, 233, 284, 395, 807
MseI TTAA 3 cut(s) 227, 459, 791
MslI CAYNNNNRTG 2 cut(s) 497, 906
MspI CCGG 9 cut(s) 93, 333, 560, 570, 645, 846, 957, 986, 1008
MspR9I CCNGG 4 cut(s) 93, 196, 671, 847
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 2 cut(s) 196, 671
MvnI CGCG 1 cut(s) 28
NciI CCSGG 2 cut(s) 93, 847
NdeII GATC 5 cut(s) 381, 399, 820, 828, 1061
NlaIII CATG 5 cut(s) 21, 283, 292, 300, 733
NlaIV GGNNCC 2 cut(s) 735, 822
NmuCI GTSAC 3 cut(s) 892, 988, 1018
NspI RCATGY 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 497
PciI ACATGT 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 856
PfeI GAWTC 5 cut(s) 48, 336, 692, 715, 982
PleI GAGTC 3 cut(s) 224, 538, 968
PpsI GAGTC 3 cut(s) 224, 538, 968
PscI ACATGT 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 655
Psp1406I AACGTT 1 cut(s) 786
Psp6I CCWGG 2 cut(s) 194, 669
PspGI CCWGG 2 cut(s) 194, 669
PspN4I GGNNCC 2 cut(s) 735, 822
PsuI RGATCY 3 cut(s) 381, 820, 1061
RseI CAYNNNNRTG 2 cut(s) 497, 906
SacI GAGCTC 1 cut(s) 655
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 3 cut(s) 227, 459, 791
Sau3AI GATC 5 cut(s) 381, 399, 820, 828, 1061
SchI GAGTC 3 cut(s) 225, 539, 969
ScrFI CCNGG 4 cut(s) 93, 196, 671, 847
SduI GDGCHC 2 cut(s) 655, 913
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 2 cut(s) 307, 1042
SmiMI CAYNNNNRTG 2 cut(s) 497, 906
Sse9I AATT 3 cut(s) 874, 883, 1067
SspMI CTAG 2 cut(s) 45, 1053
SstI GAGCTC 1 cut(s) 655
StyD4I CCNGG 4 cut(s) 91, 194, 669, 845
TaaI ACNGT 4 cut(s) 157, 254, 859, 994
TaiI ACGT 4 cut(s) 349, 442, 689, 789
TaqI TCGA 2 cut(s) 51, 804
TasI AATT 3 cut(s) 874, 883, 1067
TauI GCSGC 8 cut(s) 31, 59, 62, 71, 182, 194, 305, 746
TfiI GAWTC 5 cut(s) 48, 336, 692, 715, 982
Tru1I TTAA 3 cut(s) 227, 459, 791
Tru9I TTAA 3 cut(s) 227, 459, 791
TscAI CASTG 2 cut(s) 541, 864
TseFI GTSAC 3 cut(s) 892, 988, 1018
TseI GCWGC 2 cut(s) 944, 953
Tsp45I GTSAC 3 cut(s) 892, 988, 1018
TspDTI ATGAA 2 cut(s) 596, 728
TspGWI ACGGA 5 cut(s) 248, 403, 652, 833, 951
TspRI CASTG 2 cut(s) 541, 864
XapI RAATTY 2 cut(s) 874, 883
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 45, 1053
ZraI GACGTC 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.