Rh7BG187100

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016055
Physical Location & Seq
Forward (+)
15122078 .. 15124073
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG187100.1

Sequence Viewer

Length: 1077 bp
ATGGTGGAAGCCCAGACATGGACGACGCGTCGTATGAGCAACCCCCGGCTGGACACCACCTCCTCCTCCCCCGACCTGGCCGTCGACATCCCCGCCACTCCCCCCGGCGACGTCCGCAACGGCACTAGCTACAACAACTACGGATCGTTCCTCTCCCCGACTCTATCCACGGCCGCCATCATCGCCTCCTGGTACTTGTCCAACATCGGAGTCCTCCTCCTCAACAAGTACCTCCTCAGCTACTACGGCTACCGCTACCCTATCTTCCTCACAATGCTCCACATGATCTCCTGCGCCGTCTACAGCTACGTCGCCATCCACTTCCTCGAGCTCGTTCCACGTCAGCACATCGTCTCCCGCCGCCAGTTCTTCAAGATCCTCGCCCTCAGCGCCATCTTCTGCTTCTCCGTCGTCTGCGGCAACACCTCCCTCCGCTACCTCCCCGTCTCCTTCAACCAGGCCATCGGCGCCACCACCCCCTTCTTTACTGCCATTTTCGCTTGCATAATCACCTGTAAGAAGGAATCCGCCGAGGTTTACGGCGCCCTCCTCCCCGTGGTTTTCGGAATCGTCCTGGCCAGCAACAGCGAGCCGCTGTTCCATCTTTTCGGGTTTCTGGTCTGCGTCGGGTCGACGGCCGGCCGGGCGCTGAAGTCCGTCGTGCAGGGGATTCTGCTGACTAACGACTCCGAGAAGCTGCACTCGATGAACTTGCTGCTCTACATGGCGCCCATGGCGGCCTGCATTTTGCTGCCGTTTACTCTCTACATCGAGGGCAACGTGGCGGCGAAGACGATAGAGAAGGCGAGGGGAGACCCGTACATTGTGTTCTTGTTGCTCGGGAACGCCACCGTGGCGTACCTGGTCAACTTGACCAATTTCTTGGTGACCAAGCACACAAGCGCGTTGACGCTGCAGGTGCTCGGAAATGCCAAGGCGGCCGTGGCGGCCGTGGTGTCGGTTTTGATATTCCGGAACCCGGTGACGGTGATGGGGATGACCGGGTTCGCGGTGACCATCATGGGCGTAGTGCTTTACAGCGAGGCCAAGAAGAGATCTAAAGTTACAACTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

358

Amino Acids

39.05

Weight (kDa)

9.32

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 57 - 347 7.3e-49 Triose-phosphate Transporter family
UAA PF08449 76 - 349 2.9e-10 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12500
fragaria_vesca FvH4_5g01050
malus_domestica MD04G1075500.v1.1 MD06G1068400.v1.1
prunus_persica Prupe.5G084500_v2.0.a1
pyrus_communis pycom06g06640
rosa_chinensis RchiOBHm_Chr7g0200301
rosa_laevigata RLG00000003738
rosa_multiflora Rmu_sc0005350.1_g000003
rosa_roxburghii Rroxscaffold_3G00256170
rosa_rugosa Rorug07G0059000
rosa_samantha Rh7BG187100 Rh7CG194800 Rh7DG188400
rosa_wichuraiana Rw7G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 907
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 114
Acc36I ACCTGC 1 cut(s) 907
AccB1I GGYRCC 3 cut(s) 467, 542, 727
AccI GTMKAC 3 cut(s) 84, 300, 632
AccII CGCG 3 cut(s) 28, 905, 1010
AccIII TCCGGA 1 cut(s) 972
AclWI GGATC 2 cut(s) 151, 370
AcoI YGGCCR 7 cut(s) 78, 171, 576, 636, 640, 939, 948
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 4 cut(s) 111, 468, 543, 728
AfaI GTAC 4 cut(s) 194, 230, 821, 860
AfiI CCNNNNNNNGG 6 cut(s) 18, 49, 76, 556, 979, 985
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 373, 454
AhdI GACNNNNNGTC 1 cut(s) 27
AjiI CACGTC 1 cut(s) 341
AjnI CCWGG 5 cut(s) 75, 188, 456, 573, 861
AluBI AGCT 5 cut(s) 129, 240, 306, 331, 697
AluI AGCT 5 cut(s) 129, 240, 306, 331, 697
Alw21I GWGCWC 2 cut(s) 333, 924
Alw26I GTCTC 3 cut(s) 358, 451, 807
AlwI GGATC 2 cut(s) 151, 370
Ama87I CYCGRG 2 cut(s) 326, 839
Aor13HI TCCGGA 1 cut(s) 972
ApeKI GCWGC 4 cut(s) 697, 715, 751, 913
AspLEI GCGC 7 cut(s) 296, 392, 470, 545, 649, 730, 905
AsuC2I CCSGG 5 cut(s) 46, 105, 644, 980, 1003
AsuHPI GGTGA 5 cut(s) 502, 898, 994, 1000, 1024
AvaI CYCGRG 2 cut(s) 326, 839
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 3 cut(s) 467, 542, 727
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 2 cut(s) 333, 924
BbvCI CCTCAGC 2 cut(s) 236, 386
BbvI GCAGC 4 cut(s) 684, 702, 738, 900
BccI CCATC 7 cut(s) 185, 323, 401, 470, 609, 985, 1025
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 5 cut(s) 77, 190, 458, 575, 863
BcnI CCSGG 5 cut(s) 46, 105, 644, 980, 1003
BcoDI GTCTC 3 cut(s) 358, 451, 807
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 301, 914
BfoI RGCGCY 5 cut(s) 393, 471, 546, 650, 731
BfuAI ACCTGC 1 cut(s) 907
BglI GCCNNNNNGGC 4 cut(s) 644, 854, 938, 947
BglII AGATCT 1 cut(s) 1055
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 2 cut(s) 326, 839
BmgBI CACGTC 1 cut(s) 341
BmiI GGNNCC 4 cut(s) 469, 544, 729, 977
BpiI GAAGAC 1 cut(s) 797
BplI GAGNNNNNCTC 2 cut(s) 201, 233
Bpu10I CCTNAGC 2 cut(s) 236, 386
BpuMI CCSGG 5 cut(s) 46, 105, 644, 980, 1003
BsaHI GRCGYC 4 cut(s) 111, 468, 543, 728
BsaI GGTCTC 1 cut(s) 807
BsaWI WCCGGW 1 cut(s) 972
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 272, 302, 338, 368
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 49, 76, 556, 979, 985
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 972
BseBI CCWGG 5 cut(s) 77, 190, 458, 575, 863
BseGI GGATG 3 cut(s) 87, 315, 1002
BseLI CCNNNNNNNGG 6 cut(s) 18, 49, 76, 556, 979, 985
BseMII CTCAG 2 cut(s) 250, 400
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 6 cut(s) 52, 55, 206, 209, 224, 539
BseX3I CGGCCG 5 cut(s) 171, 636, 640, 939, 948
BseXI GCAGC 4 cut(s) 684, 702, 738, 900
BsgI GTGCAG 2 cut(s) 683, 683
Bsh1236I CGCG 3 cut(s) 28, 905, 1010
Bsh1285I CGRYCG 5 cut(s) 174, 639, 643, 942, 951
BshNI GGYRCC 3 cut(s) 467, 542, 727
BsiEI CGRYCG 5 cut(s) 174, 639, 643, 942, 951
BsiHKAI GWGCWC 2 cut(s) 333, 924
BsiHKCI CYCGRG 2 cut(s) 326, 839
BsiSI CCGG 7 cut(s) 46, 105, 639, 643, 973, 980, 1002
BslI CCNNNNNNNGG 6 cut(s) 18, 49, 76, 556, 979, 985
BsmAI GTCTC 3 cut(s) 358, 451, 807
BsmBI CGTCTC 2 cut(s) 358, 451
Bso31I GGTCTC 1 cut(s) 807
BsoBI CYCGRG 2 cut(s) 326, 839
Bsp1286I GDGCHC 2 cut(s) 333, 924
Bsp13I TCCGGA 1 cut(s) 972
Bsp143I GATC 4 cut(s) 143, 285, 375, 1055
Bsp19I CCATGG 1 cut(s) 732
BspCNI CTCAG 2 cut(s) 249, 399
BspEI TCCGGA 1 cut(s) 972
BspFNI CGCG 3 cut(s) 28, 905, 1010
BspLI GGNNCC 4 cut(s) 469, 544, 729, 977
BspMAI CTGCAG 1 cut(s) 918
BspMI ACCTGC 1 cut(s) 907
BspPI GGATC 2 cut(s) 151, 370
BspT107I GGYRCC 3 cut(s) 467, 542, 727
BspTNI GGTCTC 1 cut(s) 807
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 638
BssMI GATC 4 cut(s) 143, 285, 375, 1055
BssNI GRCGYC 4 cut(s) 111, 468, 543, 728
BssT1I CCWWGG 2 cut(s) 732, 933
Bst2UI CCWGG 5 cut(s) 77, 190, 458, 575, 863
Bst4CI ACNGT 2 cut(s) 853, 988
Bst6I CTCTTC 1 cut(s) 1046
BstACI GRCGYC 4 cut(s) 111, 468, 543, 728
BstC8I GCNNGC 5 cut(s) 502, 580, 590, 640, 742
BstDEI CTNAG 2 cut(s) 236, 386
BstDSI CCRYGG 6 cut(s) 168, 555, 732, 852, 942, 951
BstEII GGTNACC 2 cut(s) 886, 1012
BstF5I GGATG 3 cut(s) 87, 315, 1002
BstFNI CGCG 3 cut(s) 28, 905, 1010
BstH2I RGCGCY 5 cut(s) 393, 471, 546, 650, 731
BstHHI GCGC 7 cut(s) 296, 392, 470, 545, 649, 730, 905
BstKTI GATC 4 cut(s) 146, 288, 378, 1058
BstMAI GTCTC 3 cut(s) 358, 451, 807
BstMBI GATC 4 cut(s) 143, 285, 375, 1055
BstMCI CGRYCG 5 cut(s) 174, 639, 643, 942, 951
BstNI CCWGG 5 cut(s) 77, 190, 458, 575, 863
BstPI GGTNACC 2 cut(s) 886, 1012
BstSFI CTRYAG 2 cut(s) 301, 914
BstUI CGCG 3 cut(s) 28, 905, 1010
BstV1I GCAGC 4 cut(s) 684, 702, 738, 900
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 2 cut(s) 375, 1055
BstXI CCANNNNNNTGG 1 cut(s) 883
BstYI RGATCY 2 cut(s) 375, 1055
BstZI CGGCCG 5 cut(s) 171, 636, 640, 939, 948
BtgI CCRYGG 6 cut(s) 168, 555, 732, 852, 942, 951
BtgZI GCGATG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 3 cut(s) 87, 315, 1002
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 5 cut(s) 502, 580, 590, 640, 742
CfoI GCGC 7 cut(s) 296, 392, 470, 545, 649, 730, 905
Cfr10I RCCGGY 1 cut(s) 638
CseI GACGC 4 cut(s) 17, 34, 613, 919
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 4 cut(s) 193, 229, 820, 859
CviAII CATG 5 cut(s) 18, 283, 724, 733, 1021
CviQI GTAC 4 cut(s) 193, 229, 820, 859
DdeI CTNAG 2 cut(s) 236, 386
DinI GGCGCC 3 cut(s) 469, 544, 729
DpnI GATC 4 cut(s) 145, 287, 377, 1057
DpnII GATC 4 cut(s) 143, 285, 375, 1055
DrdI GACNNNNNNGTC 1 cut(s) 80
DriI GACNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 7 cut(s) 78, 171, 576, 636, 640, 939, 948
EagI CGGCCG 5 cut(s) 171, 636, 640, 939, 948
Eam1104I CTCTTC 1 cut(s) 1046
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 1046
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 331
EclXI CGGCCG 5 cut(s) 171, 636, 640, 939, 948
Eco130I CCWWGG 2 cut(s) 732, 933
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 807
Eco52I CGGCCG 5 cut(s) 171, 636, 640, 939, 948
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 2 cut(s) 326, 839
Eco91I GGTNACC 2 cut(s) 886, 1012
EcoICRI GAGCTC 1 cut(s) 331
EcoO65I GGTNACC 2 cut(s) 886, 1012
EcoRII CCWGG 5 cut(s) 75, 188, 456, 573, 861
EcoT14I CCWWGG 2 cut(s) 732, 933
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 3 cut(s) 469, 544, 729
EheI GGCGCC 3 cut(s) 469, 544, 729
ErhI CCWWGG 2 cut(s) 732, 933
Esp3I CGTCTC 2 cut(s) 358, 451
FaeI CATG 5 cut(s) 21, 286, 727, 736, 1024
FaiI YATR 7 cut(s) 19, 35, 284, 506, 725, 734, 1022
FatI CATG 5 cut(s) 17, 282, 723, 732, 1020
FauI CCCGC 2 cut(s) 100, 365
FblI GTMKAC 3 cut(s) 84, 300, 632
FokI GGATG 3 cut(s) 74, 302, 1009
FriOI GRGCYC 1 cut(s) 333
FseI GGCCGGCC 1 cut(s) 642
FspBI CTAG 1 cut(s) 126
GlaI GCGC 7 cut(s) 295, 391, 469, 544, 648, 729, 904
HaeII RGCGCY 5 cut(s) 393, 471, 546, 650, 731
HapII CCGG 7 cut(s) 46, 105, 639, 643, 973, 980, 1002
HgaI GACGC 4 cut(s) 17, 34, 613, 919
HhaI GCGC 7 cut(s) 296, 392, 470, 545, 649, 730, 905
Hin1I GRCGYC 4 cut(s) 111, 468, 543, 728
Hin1II CATG 5 cut(s) 21, 286, 727, 736, 1024
Hin6I GCGC 7 cut(s) 294, 390, 468, 543, 647, 728, 903
HinP1I GCGC 7 cut(s) 294, 390, 468, 543, 647, 728, 903
HincII GTYRAC 4 cut(s) 85, 633, 868, 909
HindII GTYRAC 4 cut(s) 85, 633, 868, 909
HinfI GANTC 6 cut(s) 160, 210, 524, 567, 670, 686
HpaII CCGG 7 cut(s) 46, 105, 639, 643, 973, 980, 1002
HphI GGTGA 5 cut(s) 502, 898, 994, 1000, 1024
Hpy166II GTNNAC 7 cut(s) 85, 301, 538, 633, 759, 868, 909
Hpy188I TCNGA 4 cut(s) 209, 566, 691, 926
Hpy188III TCNNGA 3 cut(s) 373, 841, 973
Hpy8I GTNNAC 7 cut(s) 85, 301, 538, 633, 759, 868, 909
Hpy99I CGWCG 9 cut(s) 28, 33, 86, 113, 314, 413, 629, 637, 662
HpyAV CCTTC 4 cut(s) 460, 490, 514, 796
HpyCH4III ACNGT 2 cut(s) 853, 988
HpyCH4IV ACGT 4 cut(s) 111, 309, 340, 780
HpyCH4V TGCA 5 cut(s) 504, 664, 700, 744, 916
HpyF3I CTNAG 2 cut(s) 236, 386
HpySE526I ACGT 4 cut(s) 111, 309, 340, 780
Hsp92I GRCGYC 4 cut(s) 111, 468, 543, 728
Hsp92II CATG 5 cut(s) 21, 286, 727, 736, 1024
HspAI GCGC 7 cut(s) 294, 390, 468, 543, 647, 728, 903
KasI GGCGCC 3 cut(s) 467, 542, 727
Kpn2I TCCGGA 1 cut(s) 972
KroI GCCGGC 1 cut(s) 638
KroNI GCCGGC 1 cut(s) 640
Kzo9I GATC 4 cut(s) 143, 285, 375, 1055
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 4 cut(s) 684, 702, 738, 900
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 1 cut(s) 126
MaeII ACGT 4 cut(s) 111, 309, 340, 780
MaeIII GTNAC 4 cut(s) 886, 982, 1012, 1063
MalI GATC 4 cut(s) 145, 287, 377, 1057
MboI GATC 4 cut(s) 143, 285, 375, 1055
MboII GAAGA 5 cut(s) 256, 361, 388, 802, 1063
MflI RGATCY 2 cut(s) 375, 1055
MhlI GDGCHC 2 cut(s) 333, 924
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 1 cut(s) 877
MluI ACGCGT 1 cut(s) 26
MluNI TGGCCA 1 cut(s) 578
Mly113I GGCGCC 3 cut(s) 468, 543, 728
MlyI GAGTC 3 cut(s) 154, 219, 680
MmeI TCCRAC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 578
MroI TCCGGA 1 cut(s) 972
MroNI GCCGGC 1 cut(s) 638
MscI TGGCCA 1 cut(s) 578
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 595
MspI CCGG 7 cut(s) 46, 105, 639, 643, 973, 980, 1002
MvaI CCWGG 5 cut(s) 77, 190, 458, 575, 863
MvnI CGCG 3 cut(s) 28, 905, 1010
NaeI GCCGGC 1 cut(s) 640
NarI GGCGCC 3 cut(s) 468, 543, 728
NciI CCSGG 5 cut(s) 46, 105, 644, 980, 1003
NcoI CCATGG 1 cut(s) 732
NdeII GATC 4 cut(s) 143, 285, 375, 1055
NgoMIV GCCGGC 1 cut(s) 638
NlaIII CATG 5 cut(s) 21, 286, 727, 736, 1024
NlaIV GGNNCC 4 cut(s) 469, 544, 729, 977
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 3 cut(s) 886, 982, 1012
PaeR7I CTCGAG 1 cut(s) 326
PaqCI CACCTGC 1 cut(s) 907
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PdiI GCCGGC 1 cut(s) 640
PfeI GAWTC 3 cut(s) 524, 567, 670
PleI GAGTC 3 cut(s) 154, 218, 680
PluTI GGCGCC 3 cut(s) 471, 546, 731
PpsI GAGTC 3 cut(s) 154, 218, 680
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 5 cut(s) 75, 188, 456, 573, 861
PspEI GGTNACC 2 cut(s) 886, 1012
PspGI CCWGG 5 cut(s) 75, 188, 456, 573, 861
PspN4I GGNNCC 4 cut(s) 469, 544, 729, 977
PspXI VCTCGAGB 1 cut(s) 326
PsrI GAACNNNNNNTAC 2 cut(s) 812, 844
PstI CTGCAG 1 cut(s) 918
PsuI RGATCY 2 cut(s) 375, 1055
RigI GGCCGGCC 1 cut(s) 642
RsaI GTAC 4 cut(s) 194, 230, 821, 860
RsaNI GTAC 4 cut(s) 193, 229, 820, 859
SacI GAGCTC 1 cut(s) 333
SalI GTCGAC 2 cut(s) 83, 631
Sau3AI GATC 4 cut(s) 143, 285, 375, 1055
SchI GAGTC 3 cut(s) 154, 219, 680
SduI GDGCHC 2 cut(s) 333, 924
SexAI ACCWGGT 1 cut(s) 861
SfcI CTRYAG 2 cut(s) 301, 914
SfiI GGCCNNNNNGGCC 1 cut(s) 947
SfoI GGCGCC 3 cut(s) 469, 544, 729
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 877
SspDI GGCGCC 3 cut(s) 467, 542, 727
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 333
StyI CCWWGG 2 cut(s) 732, 933
TaaI ACNGT 2 cut(s) 853, 988
TaiI ACGT 4 cut(s) 114, 312, 343, 783
TaqI TCGA 5 cut(s) 84, 327, 632, 704, 771
TasI AATT 1 cut(s) 877
TauI GCSGC 8 cut(s) 176, 363, 420, 595, 740, 788, 941, 950
TfiI GAWTC 3 cut(s) 524, 567, 670
TseFI GTSAC 3 cut(s) 886, 982, 1012
TseI GCWGC 4 cut(s) 697, 715, 751, 913
Tsp45I GTSAC 3 cut(s) 886, 982, 1012
TspDTI ATGAA 1 cut(s) 722
TspGWI ACGGA 3 cut(s) 156, 397, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 3 cut(s) 84, 300, 632
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.