Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019551

Physical Location & Seq

Genomic Coordinates Reverse (-)

4587780 .. 4588661

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCGTACGAAGCAATCCGCGAGAAAATCACACGGAGGAAAAGCTCCGACGAAGCAGCTCGCTACCAAGGCGGCAAGGAAATCTGCACCGACTACCGGAGGAGTCAAGAAACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGAGCACAGAGTTGTTGAACCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATCGCTCAAGATTTCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGCAAAGAGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGCAGAGCGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000785 GO:0000786 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019237 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0051276 GO:0051382 GO:0051383 GO:0051704 GO:0055046 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.36

Weight (kDa)

11.16

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	6.7e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13370 AT1G75600
malus_domestica	MD03G1194900.v1.1 MD09G1242000.v1.1
pyrus_communis	pycom03g14700 pycom09g16060
rosa_laevigata	RLG00000011176

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	21, 74, 290
AclWI	GGATC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	5 cut(s)	187, 238, 281, 317, 377
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	4 cut(s)	47, 61, 275, 287
AluI	AGCT	4 cut(s)	47, 61, 275, 287
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	58, 287
AsuHPI	GGTGA	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	70, 274
BciT130I	CCWGG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	59, 75, 288
BlsI	GCNGC	3 cut(s)	60, 76, 289
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	70, 274
BsgI	GTGCAG	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	99
BsiWI	CGTACG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	3 cut(s)	21, 74, 290
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	252
BspQI	GCTCTTC	2 cut(s)	150, 282
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	122, 139, 191
Bst6I	CTCTTC	2 cut(s)	150, 282
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	63, 405
BstDEI	CTNAG	2 cut(s)	248, 408
BstEII	GGTNACC	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 272, 293, 341, 404
BstNI	CCWGG	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	70, 274
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	63, 405
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	263, 341
CviJI	RGCY	6 cut(s)	5, 47, 61, 261, 275, 287
CviKI_1	RGCY	6 cut(s)	5, 47, 61, 261, 275, 287
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	248, 408
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	150, 282
EarI	CTCTTC	2 cut(s)	150, 282
Eco130I	CCWWGG	1 cut(s)	69
Eco91I	GGTNACC	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	266, 344
FaiI	YATR	4 cut(s)	264, 298, 342, 362
FatI	CATG	2 cut(s)	262, 340
Fnu4HI	GCNGC	3 cut(s)	59, 75, 288
Fsp4HI	GCNGC	3 cut(s)	59, 75, 288
GluI	GCNGC	3 cut(s)	59, 75, 288
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	266, 344
HinfI	GANTC	4 cut(s)	105, 154, 252, 391
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	51, 249
Hpy188III	TCNNGA	6 cut(s)	109, 149, 218, 230, 238, 281
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	2 cut(s)	55, 143
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	3 cut(s)	122, 139, 191
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	89, 266, 344, 398
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 272, 293, 341, 404
HpyF3I	CTNAG	2 cut(s)	248, 408
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	266, 344
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	2 cut(s)	150, 282
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	112, 117, 144
Lsp1109I	GCAGC	2 cut(s)	70, 274
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	137, 269, 329
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	74, 229
MnlI	CCTC	5 cut(s)	32, 95, 126, 286, 342
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	5 cut(s)	71, 272, 293, 341, 404
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	266, 344
NlaIV	GGNNCC	1 cut(s)	136
PciSI	GCTCTTC	2 cut(s)	150, 282
PcsI	WCGNNNNNNNCGW	3 cut(s)	154, 214, 400
PfeI	GAWTC	3 cut(s)	154, 252, 391
Pfl23II	CGTACG	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	60, 76, 289
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SapI	GCTCTTC	2 cut(s)	150, 282
SatI	GCNGC	3 cut(s)	59, 75, 288
Sau3AI	GATC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	49, 63, 118, 211, 277, 289
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	3 cut(s)	21, 74, 290
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	122, 139, 191
TaiI	ACGT	1 cut(s)	211
TasI	AATT	1 cut(s)	377
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	154, 252, 391
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	58, 287
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	3 cut(s)	51, 116, 257
TspRI	CASTG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.