Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010252

Physical Location & Seq

Genomic Coordinates Forward (+)

6199690 .. 6201759

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAATGTGAGAGACGAGGGAAAAACTACGGCGGAGAAACACGGCGGAGGAGAGGAGAATAAATCACCGGAGAACAAATGGCGATTTAATTCTCCTCTAGCTCAAGTGAGCTTAATGGGATTCGTTTGTTTCTGTTGTCCAGGAATGTTCAACGCTCTCTCCGGCATGGGAGGCGGTGGTCAAGTAGATCCAACCGCTGCTAACAACGCTAACACCGCCGTTTACACCGCTTTCACCGTTTTCGGCCTTTTAGGCGGCGGGTTTTACAACGTCCTCGGTCCACGGCTCACGTTAGCCGCTGGATGTTCGACTTACGTACTCTACGCCGGATCTTTCCTCTACTACAACCATCACCACCACCAAGCCTTCGCGATAGTCGCCGGAGCTTTACTCGGTTGCGGCGCGGGACTTCTCTGGGCCGGAGAAGGAGCTGTGATGACGTCATACCCTCCGCCGCATCGGAAAGGCACTTACATAGCGTTGTTCTGGAGTATCTTCAATCTCGGCGGCGTTATCGGTGGATTAATCCCGTTTATCCTCAACTACCAACGTAGCTCCGCCGCATCGGTCAACGACTCGACGTACATAGCGTTCATGTGTTTCATGTTCGCCGGCGTTCTTCTCTCTTTCGGTATCCTCCCGGCGACCTCCGTGATCCGTAACGACGGATCTAGATGCTCTGCCGTGAAATACTCCCGTCCGTCAACTGAAGCAGCCGCCGTGCTACGGCTATTCCTCGATCGGAAAATGCTCCTCATCGTCCCCGCGGCTTGGGCTAGCAATTTCTTCTACAGCTATCAATTCAACAATGTGAATGGACTCCTCTTTAACTTAAGAACCAGAGGATTCAACAATGTCTTCTACTGGGGAGCTCAAATGGCTGGATCCATCGCCATTGGTTACGTGATGGACTTCAGCTTCAAAAGCCGGCGAGCTAGAGGATTCACCGGAATATCACTAGTCGCGGTAATCGGAACCATTATATGGGCGGGCGGGTTAGCGAATCAGCACGGTTACTCGTTGGACAAACTACCGGAAAAGAAACTTGATTTTAAAGATTCCGGGATAGAGTTTGCGGGACCATTCGTGTTATATATGAGCTATGGATTGTTAGATGCAATGTATCAGAGTATGGTTTATTGGTTGATAGGAGCATTGGCTGATGATTCGCAGACTTTGAGTAGATATAGTGGATTCTACAAAGGAGTGCAGAGTGCAGGAGCTGCAGTGGCTTGGCAAGTGGATACTCGTAAGGTTCCGTTAATGTCACAGCTTATTGTTAATTGGTCACTTACTACTGTAAGTTATCCTTTACTTGTTCTTCTTGTGTATTTTTATGTTAAAAATGATAATGATGATGATAGTAATGATAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 UNC-93

Protein Analysis

459

Amino Acids

49.97

Weight (kDa)

8.79

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	56 - 411	3.1e-12	Major Facilitator Superfamily
UNC-93	PF05978	61 - 258	1.7e-18	Ion channel regulatory protein UNC-93

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18000 AT1G18010
fragaria_vesca	FvH4_7g33230
malus_domestica	MD01G1230700.v1.1 MD01G1230800.v1.1 MD01G1230900.v1.1 MD07G1302200.v1.1
prunus_persica	Prupe.2G321300_v2.0.a1
pyrus_communis	pycom01g23860 pycom01g23870 pycom01g23880 pycom07g27540
rosa_chinensis	RchiOBHm_Chr1g0383221
rosa_laevigata	RLG00000026122
rosa_multiflora	Rmu_sc0007173.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277500
rosa_rugosa	Rorug01G0439600
rosa_samantha	Rh1AG465200 Rh1BG422600 Rh1DG455300
rosa_wichuraiana	Rw1G040720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	984
AccII	CGCG	4 cut(s)	371, 404, 767, 965
AclWI	GGATC	6 cut(s)	182, 337, 649, 676, 879, 892
AcuI	CTGAAG	2 cut(s)	729, 898
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	2 cut(s)	318, 584
AfiI	CCNNNNNNNGG	3 cut(s)	726, 771, 984
AflII	CTTAAG	1 cut(s)	832
AgsI	TTSAA	5 cut(s)	151, 499, 805, 850, 922
AhlI	ACTAGT	1 cut(s)	958
AjnI	CCWGG	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	6 cut(s)	182, 337, 649, 676, 879, 892
AlwNI	CAGNNNCTG	1 cut(s)	1223
AoxI	GGCC	2 cut(s)	244, 417
ApeKI	GCWGC	3 cut(s)	197, 713, 1223
AseI	ATTAAT	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	3 cut(s)	278, 417, 1079
AsuC2I	CCSGG	2 cut(s)	641, 1063
AsuHPI	GGTGA	4 cut(s)	57, 226, 344, 937
AsuNHI	GCTAGC	1 cut(s)	776
AvaII	GGWCC	2 cut(s)	278, 1079
BamHI	GGATCC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	874
BbvI	GCAGC	3 cut(s)	184, 725, 1210
BccI	CCATC	3 cut(s)	357, 896, 901
BceAI	ACGGC	7 cut(s)	45, 58, 203, 299, 668, 704, 743
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	2 cut(s)	644, 1237
BcnI	CCSGG	2 cut(s)	641, 1063
BcoDI	GTCTC	1 cut(s)	6
BcuI	ACTAGT	1 cut(s)	958
BfaI	CTAG	5 cut(s)	98, 672, 777, 936, 959
BfmI	CTRYAG	2 cut(s)	790, 1224
BfrI	CTTAAG	1 cut(s)	832
BfuI	GTATCC	2 cut(s)	644, 1237
BglI	GCCNNNNNGGC	1 cut(s)	252
Bme1390I	CCNGG	3 cut(s)	141, 641, 1063
Bme18I	GGWCC	2 cut(s)	278, 1079
BmgT120I	GGNCC	3 cut(s)	278, 417, 1079
BmiI	GGNNCC	4 cut(s)	886, 976, 1080, 1257
BmrFI	CCNGG	3 cut(s)	141, 641, 1063
BmrI	ACTGGG	1 cut(s)	874
BmsI	GCATC	4 cut(s)	466, 572, 665, 1105
BmtI	GCTAGC	1 cut(s)	780
BmuI	ACTGGG	1 cut(s)	874
BpiI	GAAGAC	1 cut(s)	850
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
BpmI	CTGGAG	1 cut(s)	508
BpuEI	CTTGAG	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	641, 1063
BsaAI	YACGTR	2 cut(s)	316, 904
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	274, 281, 765
BsaWI	WCCGGW	3 cut(s)	67, 947, 1033
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 1212, 1242
Bsc4I	CCNNNNNNNGG	3 cut(s)	726, 771, 984
Bse118I	RCCGGY	2 cut(s)	611, 927
Bse1I	ACTGG	1 cut(s)	869
Bse3DI	GCAATG	1 cut(s)	1125
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	274, 281, 765
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	3 cut(s)	726, 771, 984
BseMI	GCAATG	1 cut(s)	1125
BseNI	ACTGG	1 cut(s)	869
BseRI	GAGGAG	5 cut(s)	63, 68, 84, 743, 812
BseXI	GCAGC	3 cut(s)	184, 725, 1210
BsgI	GTGCAG	2 cut(s)	1229, 1236
Bsh1236I	CGCG	4 cut(s)	371, 404, 767, 965
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	2 cut(s)	246, 419
BsiEI	CGRYCG	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	874
BslFI	GGGAC	3 cut(s)	420, 746, 1092
BslI	CCNNNNNNNGG	3 cut(s)	726, 771, 984
BsmAI	GTCTC	1 cut(s)	6
BsmBI	CGTCTC	1 cut(s)	6
BsmFI	GGGAC	3 cut(s)	420, 746, 1092
BsnI	GGCC	2 cut(s)	246, 419
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
Bsp68I	TCGCGA	1 cut(s)	371
BspANI	GGCC	2 cut(s)	246, 419
BspFNI	CGCG	4 cut(s)	371, 404, 767, 965
BspLI	GGNNCC	4 cut(s)	886, 976, 1080, 1257
BspMAI	CTGCAG	1 cut(s)	1228
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	6 cut(s)	182, 337, 649, 676, 879, 892
BspTI	CTTAAG	1 cut(s)	832
BsrDI	GCAATG	1 cut(s)	1125
BsrFI	RCCGGY	2 cut(s)	611, 927
BsrI	ACTGG	1 cut(s)	869
BssAI	RCCGGY	2 cut(s)	611, 927
BssECI	CCNNGG	3 cut(s)	274, 281, 765
BssMI	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
BssNI	GRCGYC	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	238, 1013, 1300
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	832
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstBAI	YACGTR	2 cut(s)	316, 904
BstC8I	GCNNGC	5 cut(s)	613, 778, 929, 933, 991
BstDSI	CCRYGG	2 cut(s)	281, 765
BstF5I	GGATG	1 cut(s)	308
BstFNI	CGCG	4 cut(s)	371, 404, 767, 965
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	6 cut(s)	190, 332, 657, 671, 742, 887
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
BstMCI	CGRYCG	1 cut(s)	742
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	139, 639, 1061
BstSFI	CTRYAG	2 cut(s)	790, 1224
BstSNI	TACGTA	1 cut(s)	316
BstUI	CGCG	4 cut(s)	371, 404, 767, 965
BstV1I	GCAGC	3 cut(s)	184, 725, 1210
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	4 cut(s)	187, 329, 668, 884
BstYI	RGATCY	4 cut(s)	187, 329, 668, 884
BsuI	GTATCC	2 cut(s)	644, 1237
BsuRI	GGCC	2 cut(s)	246, 419
BtgI	CCRYGG	2 cut(s)	281, 765
BtgZI	GCGATG	1 cut(s)	874
BtsCI	GGATG	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	1233
BtsIMutI	CAGTG	1 cut(s)	1233
BtuMI	TCGCGA	1 cut(s)	371
Cac8I	GCNNGC	5 cut(s)	613, 778, 929, 933, 991
CaiI	CAGNNNCTG	1 cut(s)	1223
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	2 cut(s)	611, 927
Cfr13I	GGNCC	3 cut(s)	278, 417, 1079
Cfr42I	CCGCGG	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	317, 583
CviAII	CATG	3 cut(s)	166, 595, 604
CviQI	GTAC	2 cut(s)	317, 583
DpnI	GATC	6 cut(s)	189, 331, 656, 670, 741, 886
DpnII	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
DraI	TTTAAA	1 cut(s)	1054
EciI	GGCGGA	4 cut(s)	47, 60, 441, 547
Ecl136II	GAGCTC	1 cut(s)	872
Eco105I	TACGTA	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	874
Eco47I	GGWCC	2 cut(s)	278, 1079
Eco53kI	GAGCTC	1 cut(s)	872
Eco57I	CTGAAG	2 cut(s)	729, 898
EcoICRI	GAGCTC	1 cut(s)	872
EcoRII	CCWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	874
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	3 cut(s)	169, 598, 607
FalI	AAGNNNNNCTT	2 cut(s)	1294, 1326
FaqI	GGGAC	3 cut(s)	420, 746, 1092
FatI	CATG	3 cut(s)	165, 594, 603
FauI	CCCGC	6 cut(s)	251, 397, 772, 982, 986, 1069
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	874
FspBI	CTAG	5 cut(s)	98, 672, 777, 936, 959
GlaI	GCGC	1 cut(s)	403
GsuI	CTGGAG	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	246, 419
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	3 cut(s)	169, 598, 607
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	571, 705
HindII	GTYRAC	2 cut(s)	571, 705
HinfI	GANTC	9 cut(s)	120, 575, 819, 846, 942, 1003, 1058, 1166, 1194
HphI	GGTGA	4 cut(s)	57, 226, 344, 937
Hpy166II	GTNNAC	4 cut(s)	223, 281, 571, 705
Hpy188I	TCNGA	4 cut(s)	462, 744, 974, 1128
Hpy188III	TCNNGA	3 cut(s)	370, 487, 672
Hpy8I	GTNNAC	4 cut(s)	223, 281, 571, 705
Hpy99I	CGWCG	2 cut(s)	583, 668
HpyAV	CCTTC	2 cut(s)	376, 419
HpyCH4III	ACNGT	3 cut(s)	238, 1013, 1300
HpyCH4IV	ACGT	7 cut(s)	270, 290, 315, 440, 550, 581, 903
HpyCH4V	TGCA	4 cut(s)	1118, 1210, 1217, 1226
HpySE526I	ACGT	7 cut(s)	270, 290, 315, 440, 550, 581, 903
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	169, 598, 607
HspAI	GCGC	1 cut(s)	402
KroI	GCCGGC	2 cut(s)	611, 927
KroNI	GCCGGC	2 cut(s)	613, 929
KspI	CCGCGG	1 cut(s)	768
Kzo9I	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
LmnI	GCTCC	7 cut(s)	383, 428, 560, 756, 869, 1151, 1220
Lsp1109I	GCAGC	3 cut(s)	184, 725, 1210
LweI	GCATC	4 cut(s)	466, 572, 665, 1105
MaeI	CTAG	5 cut(s)	98, 672, 777, 936, 959
MaeII	ACGT	7 cut(s)	270, 290, 315, 440, 550, 581, 903
MaeIII	GTNAC	5 cut(s)	659, 899, 1013, 1266, 1287
MalI	GATC	6 cut(s)	189, 331, 656, 670, 741, 886
MboI	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
MboII	GAAGA	5 cut(s)	487, 611, 778, 850, 1313
MflI	RGATCY	4 cut(s)	187, 329, 668, 884
MhlI	GDGCHC	1 cut(s)	874
MluCI	AATT	4 cut(s)	88, 781, 800, 1282
MlyI	GAGTC	2 cut(s)	569, 813
MmeI	TCCRAC	2 cut(s)	215, 1002
MreI	CGCCGGCG	1 cut(s)	611
MroNI	GCCGGC	2 cut(s)	611, 927
MseI	TTAA	9 cut(s)	87, 113, 524, 828, 833, 1053, 1262, 1281, 1341
MspA1I	CMGCKG	3 cut(s)	197, 299, 767
MspCI	CTTAAG	1 cut(s)	832
MspR9I	CCNGG	3 cut(s)	141, 641, 1063
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	4 cut(s)	371, 404, 767, 965
NaeI	GCCGGC	2 cut(s)	613, 929
NciI	CCSGG	2 cut(s)	641, 1063
NdeII	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
NgoMIV	GCCGGC	2 cut(s)	611, 927
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	3 cut(s)	169, 598, 607
NlaIV	GGNNCC	4 cut(s)	886, 976, 1080, 1257
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	1266, 1287
NruI	TCGCGA	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PdiI	GCCGGC	2 cut(s)	613, 929
PfeI	GAWTC	7 cut(s)	120, 846, 942, 1003, 1058, 1166, 1194
PflMI	CCANNNNNTGG	1 cut(s)	984
PfoI	TCCNGGA	2 cut(s)	139, 1061
Ple19I	CGATCG	1 cut(s)	742
PleI	GAGTC	2 cut(s)	569, 813
PpsI	GAGTC	2 cut(s)	569, 813
Ppu21I	YACGTR	2 cut(s)	316, 904
PshBI	ATTAAT	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	874
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	4 cut(s)	886, 976, 1080, 1257
PspPI	GGNCC	3 cut(s)	278, 417, 1079
PsrI	GAACNNNNNNTAC	2 cut(s)	575, 607
PstI	CTGCAG	1 cut(s)	1228
PstNI	CAGNNNCTG	1 cut(s)	1223
PsuI	RGATCY	4 cut(s)	187, 329, 668, 884
PvuI	CGATCG	1 cut(s)	742
RruI	TCGCGA	1 cut(s)	371
RsaI	GTAC	2 cut(s)	318, 584
RsaNI	GTAC	2 cut(s)	317, 583
SacI	GAGCTC	1 cut(s)	874
SacII	CCGCGG	1 cut(s)	768
SaqAI	TTAA	9 cut(s)	87, 113, 524, 828, 833, 1053, 1262, 1281, 1341
Sau3AI	GATC	6 cut(s)	187, 329, 654, 668, 739, 884
Sau96I	GGNCC	3 cut(s)	278, 417, 1079
SchI	GAGTC	2 cut(s)	569, 813
ScrFI	CCNGG	3 cut(s)	141, 641, 1063
SduI	GDGCHC	1 cut(s)	874
SfaNI	GCATC	4 cut(s)	466, 572, 665, 1105
SfcI	CTRYAG	2 cut(s)	790, 1224
Sfr303I	CCGCGG	1 cut(s)	768
SgrAI	CRCCGGYG	1 cut(s)	611
SgrBI	CCGCGG	1 cut(s)	768
SinI	GGWCC	2 cut(s)	278, 1079
SmlI	CTYRAG	2 cut(s)	102, 832
SmoI	CTYRAG	2 cut(s)	102, 832
SnaBI	TACGTA	1 cut(s)	316
SpeI	ACTAGT	1 cut(s)	958
Sse9I	AATT	4 cut(s)	88, 781, 800, 1282
SspMI	CTAG	5 cut(s)	98, 672, 777, 936, 959
SstI	GAGCTC	1 cut(s)	874
StyD4I	CCNGG	3 cut(s)	139, 639, 1061
TaaI	ACNGT	3 cut(s)	238, 1013, 1300
TaiI	ACGT	7 cut(s)	273, 293, 318, 443, 553, 584, 906
TaqI	TCGA	3 cut(s)	308, 578, 738
TaqII	GACCGA	2 cut(s)	266, 556
TasI	AATT	4 cut(s)	88, 781, 800, 1282
TauI	GCSGC	8 cut(s)	258, 299, 402, 457, 510, 563, 719, 770
TfiI	GAWTC	7 cut(s)	120, 846, 942, 1003, 1058, 1166, 1194
Tru1I	TTAA	9 cut(s)	87, 113, 524, 828, 833, 1053, 1262, 1281, 1341
Tru9I	TTAA	9 cut(s)	87, 113, 524, 828, 833, 1053, 1262, 1281, 1341
TscAI	CASTG	1 cut(s)	1233
TseFI	GTSAC	2 cut(s)	1266, 1287
TseI	GCWGC	3 cut(s)	197, 713, 1223
Tsp45I	GTSAC	2 cut(s)	1266, 1287
TspDTI	ATGAA	3 cut(s)	17, 583, 592
TspGWI	ACGGA	5 cut(s)	640, 647, 681, 690, 1248
TspRI	CASTG	1 cut(s)	1233
Van91I	CCANNNNNTGG	1 cut(s)	984
Vha464I	CTTAAG	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	278, 1079
VspI	ATTAAT	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	671
XspI	CTAG	5 cut(s)	98, 672, 777, 936, 959
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.