AT1G18580

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014418
Physical Location & Seq
Forward (+)
6395769 .. 6398274
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18580.1

Sequence Viewer

Length: 1614 bp
ATGAGGCGGTGGCCGGTGGATCACCGGCGGCGAGGTAGAAGGAGATTGTCGAGTTGGATATGGTTTCTCCTTGGTTCTTTCTCTGTCGCTGGTTTAGTTCTCTTCATCGTTCAGCATTATCACCATCAACAAGATCCATCCCAGCTTTTACTTGAGAGAGACACGAGAACCGAAATGGTATCTCCTCCCCATTTAAACTTCACGGAAGAGGTCACAAGTGCTTCCTCCTTCTCTAGGCAGTTAGCAGAGCAAATGACACTTGCCAAAGCTTATGTGTTTATAGCTAAAGAGCATAATAATCTTCATTTAGCTTGGGAATTGAGTTCTAAGATCAGAAGTTGTCAGCTTTTGCTTTCCAAAGCAGCTATGAGAGGACAACCTATTTCGTTTGATGAGGCTAAACCGATTATTACTGGTCTATCAGCTCTTATCTACAAGGCTCAAGATGCACATTATGATATTGCCACCACTATGATGACCATGAAATCTCACATCCAAGCACTTGAAGAGCGTGCAAATGCAGCTACTGTTCAGACCACAATATTTGGGCAATTGGTTGCTGAGGCATTACCAAAGAGCCTCCACTGTTTGACGATAAAGCTCACATCTGATTGGGTAACAGAGCCATCTCGCCATGAACTGGCAGATGAGAACAGAAACTCACCTAGACTTGTCGACAACAACCTCTACCACTTCTGCATCTTCTCGGACAACGTGATTGCCACCTCGGTTGTTGTTAATTCAACTGTCTCGAATGCTGATCATCCAAAGCAGCTTGTTTTCCACATAGTGACGAATCGAGTGAGCTACAAAGCTATGCAGGCCTGGTTTCTAAGTAATGACTTCAAGGGCTCAGCAATAGAGATCAGGAGCGTAGAGGAGTTTTCTTGGTTGAATGCTTCATATTCTCCTGTTGTTAAGCAACTGCTGGACACAGATGCAAGAGCTTACTATTTCGGGGAACAGACAAGTCAAGATACGATTTCCGAGCCAAAAGTGAGGAACCCAAAGTACTTGTCATTACTGAACCATCTCAGATTCTACATTCCGGAGATCTATCCACAGCTAGAGAAGATTGTTTTCCTAGACGATGATGTTGTTGTTCAGAAAGATTTGACTCCACTCTTCTCCTTGGATCTGCATGGAAACGTCAATGGAGCTGTGGAAACATGTCTTGAAGCCTTTCACCGATATTACAAGTATCTAAATTTCTCGAACCCACTCATCAGCTCAAAGTTCGACCCACAAGCATGTGGATGGGCTTTTGGTATGAACGTTTTTGATCTGATCGCTTGGAGGAATGCAAACGTGACTGCTCGGTACCATTACTGGCAAGATCAGAACAGAGAACGAACGCTTTGGAAACTCGGGACACTCCCTCCAGGTCTACTATCTTTCTATGGTCTCACAGAGCCACTGGACAGAAGATGGCATGTCTTGGGTTTAGGTTACGATGTGAACATCGATAACCGTCTGATCGAAACAGCAGCTGTGATTCACTATAATGGTAACATGAAGCCTTGGCTAAAGCTGGCTATTGGTAGGTATAAACCTTTCTGGTTAAAGTTTTTGAACTCGAGCCATCCTTATTTACAAGATTGTGTCACAGCTTAA

Protein Analysis

537

Amino Acids

61.88

Weight (kDa)

8.1

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 79 - 122 3.7e-06 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 233 - 511 5e-71 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18580
fragaria_vesca FvH4_5g13450
malus_domestica MD06G1204900.v1.1 MD14G1216000.v1.1
prunus_persica Prupe.5G208900_v2.0.a1 Prupe.5G209400_v2.0.a1
pyrus_communis pycom14g17880
rosa_chinensis RchiOBHm_Chr7g0183671
rosa_laevigata RLG00000005034
rosa_multiflora Rmu_sc0003610.1_g000023
rosa_roxburghii Rroxscaffold_3G00270340
rosa_rugosa Rorug06G0459300
rosa_samantha Rh7AG060000 Rh7BG060100 Rh7CG061700 Rh7DG060100
rosa_wichuraiana Rw7G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1320
AccB1I GGYRCC 1 cut(s) 1320
AccB7I CCANNNNNTGG 1 cut(s) 640
AccI GTMKAC 2 cut(s) 675, 1387
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 2 cut(s) 7, 28
AclI AACGTT 1 cut(s) 1275
AclWI GGATC 3 cut(s) 27, 128, 1143
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 1207
AdeI CACNNNGTG 1 cut(s) 790
AfaI GTAC 2 cut(s) 1013, 1322
AfiI CCNNNNNNNGG 2 cut(s) 234, 640
AflIII ACRYGT 1 cut(s) 1169
AgsI TTSAA 6 cut(s) 506, 744, 847, 895, 1178, 1573
AjnI CCWGG 2 cut(s) 824, 1381
Alw26I GTCTC 3 cut(s) 153, 754, 1409
AlwI GGATC 3 cut(s) 27, 128, 1143
AlwNI CAGNNNCTG 2 cut(s) 527, 1490
Ama87I CYCGRG 2 cut(s) 1367, 1576
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 2 cut(s) 11, 822
ApeKI GCWGC 4 cut(s) 362, 521, 772, 1487
ApoI RAATTY 1 cut(s) 1207
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
Asp700I GAANNNNTTC 1 cut(s) 1182
Asp718I GGTACC 1 cut(s) 1320
AsuHPI GGTGA 4 cut(s) 14, 113, 654, 1178
AvaI CYCGRG 2 cut(s) 1367, 1576
BanI GGYRCC 1 cut(s) 1320
BanII GRGCYC 1 cut(s) 854
BauI CACGAG 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 4 cut(s) 374, 533, 784, 1499
BccI CCATC 7 cut(s) 132, 145, 634, 1038, 1251, 1422, 1590
BciT130I CCWGG 2 cut(s) 826, 1383
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 3 cut(s) 153, 754, 1409
BfaI CTAG 4 cut(s) 234, 666, 1067, 1085
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 5 cut(s) 29, 363, 522, 773, 1488
BlpI GCTNAGC 1 cut(s) 853
BlsI GCNGC 5 cut(s) 30, 364, 523, 774, 1489
BmcAI AGTACT 1 cut(s) 1013
Bme1390I CCNGG 2 cut(s) 826, 1383
BmeT110I CYCGRG 2 cut(s) 1367, 1576
BmiI GGNNCC 2 cut(s) 1004, 1322
BmrFI CCNGG 2 cut(s) 826, 1383
BmsI GCATC 3 cut(s) 436, 708, 928
BpmI CTGGAG 1 cut(s) 1365
Bpu10I CCTNAGC 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 853
BpuEI CTTGAG 2 cut(s) 173, 426
Bsa29I ATCGAT 1 cut(s) 1464
BsaI GGTCTC 1 cut(s) 1409
BsaJI CCNNGG 4 cut(s) 70, 726, 1131, 1520
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 1363, 1393
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 640
Bse118I RCCGGY 2 cut(s) 13, 24
Bse1I ACTGG 4 cut(s) 418, 645, 1334, 1422
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 2 cut(s) 826, 1383
BseCI ATCGAT 1 cut(s) 1464
BseDI CCNNGG 4 cut(s) 70, 726, 1131, 1520
BseGI GGATG 5 cut(s) 137, 492, 763, 1262, 1582
BseLI CCNNNNNNNGG 2 cut(s) 234, 640
BseMII CTCAG 3 cut(s) 552, 867, 1048
BseNI ACTGG 4 cut(s) 418, 645, 1334, 1422
BseRI GAGGAG 2 cut(s) 174, 893
BseXI GCAGC 4 cut(s) 374, 533, 784, 1499
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 13, 824
BshNI GGYRCC 1 cut(s) 1320
BshVI ATCGAT 1 cut(s) 1464
BsiHKCI CYCGRG 2 cut(s) 1367, 1576
BsiSI CCGG 3 cut(s) 14, 25, 1049
BslFI GGGAC 1 cut(s) 1384
BslI CCNNNNNNNGG 2 cut(s) 234, 640
BsmAI GTCTC 3 cut(s) 153, 754, 1409
BsmFI GGGAC 1 cut(s) 1384
BsmI GAATGC 3 cut(s) 760, 901, 1306
BsnI GGCC 2 cut(s) 13, 824
Bso31I GGTCTC 1 cut(s) 1409
BsoBI CYCGRG 2 cut(s) 1367, 1576
Bsp1286I GDGCHC 1 cut(s) 854
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1720I GCTNAGC 1 cut(s) 853
BspACI CCGC 2 cut(s) 7, 28
BspANI GGCC 2 cut(s) 13, 824
BspCNI CTCAG 3 cut(s) 553, 866, 1047
BspDI ATCGAT 1 cut(s) 1464
BspEI TCCGGA 1 cut(s) 1048
BspLI GGNNCC 2 cut(s) 1004, 1322
BspPI GGATC 3 cut(s) 27, 128, 1143
BspQI GCTCTTC 1 cut(s) 501
BspT107I GGYRCC 1 cut(s) 1320
BspTNI GGTCTC 1 cut(s) 1409
BsrFI RCCGGY 2 cut(s) 13, 24
BsrI ACTGG 4 cut(s) 418, 645, 1334, 1422
BssAI RCCGGY 2 cut(s) 13, 24
BssECI CCNNGG 4 cut(s) 70, 726, 1131, 1520
BssSI CACGAG 1 cut(s) 163
BssT1I CCWWGG 3 cut(s) 70, 1131, 1520
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 826, 1383
Bst4CI ACNGT 4 cut(s) 529, 587, 748, 1472
Bst6I CTCTTC 4 cut(s) 107, 201, 501, 1130
BstC8I GCNNGC 3 cut(s) 513, 822, 1533
BstDEI CTNAG 5 cut(s) 327, 561, 833, 853, 1034
BstENI CCTNNNNNAGG 1 cut(s) 232
BstF5I GGATG 5 cut(s) 137, 492, 763, 1262, 1582
BstMAI GTCTC 3 cut(s) 153, 754, 1409
BstMWI GCNNNNNNNGC 3 cut(s) 446, 521, 821
BstNI CCWGG 2 cut(s) 826, 1383
BstNSI RCATGY 3 cut(s) 1173, 1254, 1436
BstSCI CCNGG 2 cut(s) 824, 1381
BstV1I GCAGC 4 cut(s) 374, 533, 784, 1499
BstX2I RGATCY 3 cut(s) 133, 1053, 1135
BstYI RGATCY 3 cut(s) 133, 1053, 1135
Bsu15I ATCGAT 1 cut(s) 1464
BsuRI GGCC 2 cut(s) 13, 824
BsuTUI ATCGAT 1 cut(s) 1464
BtsCI GGATG 5 cut(s) 137, 492, 763, 1262, 1582
BtsIMutI CAGTG 2 cut(s) 583, 1415
Cac8I GCNNGC 3 cut(s) 513, 822, 1533
CaiI CAGNNNCTG 2 cut(s) 527, 1490
Cfr10I RCCGGY 2 cut(s) 13, 24
ClaI ATCGAT 1 cut(s) 1464
Csp6I GTAC 2 cut(s) 1012, 1321
CspCI CAANNNNNGTGG 4 cut(s) 526, 561, 712, 747
CviAII CATG 7 cut(s) 481, 635, 1142, 1170, 1251, 1433, 1513
CviQI GTAC 2 cut(s) 1012, 1321
DdeI CTNAG 5 cut(s) 327, 561, 833, 853, 1034
DraI TTTAAA 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 790
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 4 cut(s) 107, 201, 501, 1130
EarI CTCTTC 4 cut(s) 107, 201, 501, 1130
Eco130I CCWWGG 3 cut(s) 70, 1131, 1520
Eco147I AGGCCT 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 1409
Eco88I CYCGRG 2 cut(s) 1367, 1576
EcoNI CCTNNNNNAGG 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 824, 1381
EcoT14I CCWWGG 3 cut(s) 70, 1131, 1520
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 3 cut(s) 70, 1131, 1520
FaeI CATG 7 cut(s) 484, 638, 1145, 1173, 1254, 1436, 1516
FaqI GGGAC 1 cut(s) 1384
FatI CATG 7 cut(s) 480, 634, 1141, 1169, 1250, 1432, 1512
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 2 cut(s) 675, 1387
Fnu4HI GCNGC 5 cut(s) 29, 363, 522, 773, 1488
FokI GGATG 5 cut(s) 124, 479, 750, 1269, 1569
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 5 cut(s) 29, 363, 522, 773, 1488
FspBI CTAG 4 cut(s) 234, 666, 1067, 1085
GluI GCNGC 5 cut(s) 29, 363, 522, 773, 1488
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 1365
HaeIII GGCC 2 cut(s) 13, 824
HapII CCGG 3 cut(s) 14, 25, 1049
Hin1II CATG 7 cut(s) 484, 638, 1145, 1173, 1254, 1436, 1516
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 4 cut(s) 796, 1038, 1117, 1495
HpaII CCGG 3 cut(s) 14, 25, 1049
HphI GGTGA 4 cut(s) 14, 113, 654, 1178
Hpy166II GTNNAC 3 cut(s) 676, 1388, 1459
Hpy188III TCNNGA 8 cut(s) 443, 751, 868, 974, 1049, 1175, 1213, 1369
Hpy8I GTNNAC 3 cut(s) 676, 1388, 1459
HpyAV CCTTC 2 cut(s) 33, 238
HpyCH4III ACNGT 4 cut(s) 529, 587, 748, 1472
HpyCH4IV ACGT 4 cut(s) 714, 1149, 1275, 1308
HpyCH4V TGCA 8 cut(s) 449, 515, 521, 699, 820, 941, 1141, 1304
HpyF10VI GCNNNNNNNGC 3 cut(s) 446, 521, 821
HpyF3I CTNAG 5 cut(s) 327, 561, 833, 853, 1034
HpySE526I ACGT 4 cut(s) 714, 1149, 1275, 1308
Hsp92II CATG 7 cut(s) 484, 638, 1145, 1173, 1254, 1436, 1516
Kpn2I TCCGGA 1 cut(s) 1048
KpnI GGTACC 1 cut(s) 1324
Ksp22I TGATCA 1 cut(s) 760
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 2 cut(s) 870, 1157
Lsp1109I GCAGC 4 cut(s) 374, 533, 784, 1499
LweI GCATC 3 cut(s) 436, 708, 928
MaeI CTAG 4 cut(s) 234, 666, 1067, 1085
MaeII ACGT 4 cut(s) 714, 1149, 1275, 1308
MaeIII GTNAC 7 cut(s) 211, 616, 790, 1309, 1448, 1508, 1603
MboII GAAGA 8 cut(s) 94, 218, 293, 518, 694, 1084, 1117, 1437
MfeI CAATTG 1 cut(s) 551
MflI RGATCY 3 cut(s) 133, 1053, 1135
MhlI GDGCHC 1 cut(s) 854
MluCI AATT 4 cut(s) 317, 551, 739, 1207
MlyI GAGTC 1 cut(s) 1111
MmeI TCCRAC 1 cut(s) 35
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 1182
MseI TTAA 5 cut(s) 194, 738, 918, 1562, 1612
MslI CAYNNNNRTG 5 cut(s) 470, 473, 1249, 1255, 1503
MspA1I CMGCKG 1 cut(s) 1490
MspI CCGG 3 cut(s) 14, 25, 1049
MspR9I CCNGG 2 cut(s) 826, 1383
MunI CAATTG 1 cut(s) 551
Mva1269I GAATGC 3 cut(s) 760, 901, 1306
MvaI CCWGG 2 cut(s) 826, 1383
MwoI GCNNNNNNNGC 3 cut(s) 446, 521, 821
NlaIII CATG 7 cut(s) 484, 638, 1145, 1173, 1254, 1436, 1516
NlaIV GGNNCC 2 cut(s) 1004, 1322
NmuCI GTSAC 4 cut(s) 211, 790, 1309, 1603
NspI RCATGY 3 cut(s) 1173, 1254, 1436
PaeR7I CTCGAG 1 cut(s) 1576
PceI AGGCCT 1 cut(s) 824
PciI ACATGT 1 cut(s) 1169
PciSI GCTCTTC 1 cut(s) 501
PctI GAATGC 3 cut(s) 760, 901, 1306
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 3 cut(s) 796, 1038, 1495
PflMI CCANNNNNTGG 1 cut(s) 640
PkrI GCNGC 5 cut(s) 30, 364, 523, 774, 1489
PleI GAGTC 1 cut(s) 1111
PpsI GAGTC 1 cut(s) 1111
PscI ACATGT 1 cut(s) 1169
Psp1406I AACGTT 1 cut(s) 1275
Psp6I CCWGG 2 cut(s) 824, 1381
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 824, 1381
PspN4I GGNNCC 2 cut(s) 1004, 1322
PspXI VCTCGAGB 1 cut(s) 1576
PsrI GAACNNNNNNTAC 2 cut(s) 995, 1027
PstNI CAGNNNCTG 2 cut(s) 527, 1490
PsuI RGATCY 3 cut(s) 133, 1053, 1135
PvuII CAGCTG 1 cut(s) 1490
RsaI GTAC 2 cut(s) 1013, 1322
RsaNI GTAC 2 cut(s) 1012, 1321
RseI CAYNNNNRTG 5 cut(s) 470, 473, 1249, 1255, 1503
SalI GTCGAC 1 cut(s) 674
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 5 cut(s) 194, 738, 918, 1562, 1612
SatI GCNGC 5 cut(s) 29, 363, 522, 773, 1488
ScaI AGTACT 1 cut(s) 1013
SchI GAGTC 1 cut(s) 1111
ScrFI CCNGG 2 cut(s) 826, 1383
SduI GDGCHC 1 cut(s) 854
SfaNI GCATC 3 cut(s) 436, 708, 928
Sfr274I CTCGAG 1 cut(s) 1576
SgrAI CRCCGGYG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 1576
SmiMI CAYNNNNRTG 5 cut(s) 470, 473, 1249, 1255, 1503
SmlI CTYRAG 3 cut(s) 152, 441, 1576
SmoI CTYRAG 3 cut(s) 152, 441, 1576
Sse9I AATT 4 cut(s) 317, 551, 739, 1207
SseBI AGGCCT 1 cut(s) 824
SsiI CCGC 2 cut(s) 7, 28
SspI AATATT 1 cut(s) 543
SspMI CTAG 4 cut(s) 234, 666, 1067, 1085
StuI AGGCCT 1 cut(s) 824
StyD4I CCNGG 2 cut(s) 824, 1381
StyI CCWWGG 3 cut(s) 70, 1131, 1520
TaaI ACNGT 4 cut(s) 529, 587, 748, 1472
TaiI ACGT 4 cut(s) 717, 1152, 1278, 1311
TaqI TCGA 9 cut(s) 50, 675, 752, 799, 1214, 1239, 1464, 1479, 1577
TasI AATT 4 cut(s) 317, 551, 739, 1207
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 3 cut(s) 796, 1038, 1495
Tru1I TTAA 5 cut(s) 194, 738, 918, 1562, 1612
Tru9I TTAA 5 cut(s) 194, 738, 918, 1562, 1612
TscAI CASTG 2 cut(s) 590, 1422
TseFI GTSAC 4 cut(s) 211, 790, 1309, 1603
TseI GCWGC 4 cut(s) 362, 521, 772, 1487
Tsp45I GTSAC 4 cut(s) 211, 790, 1309, 1603
TspDTI ATGAA 7 cut(s) 94, 293, 497, 651, 891, 1286, 1529
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 590, 1422
Van91I CCANNNNNTGG 1 cut(s) 640
XagI CCTNNNNNAGG 1 cut(s) 232
XapI RAATTY 1 cut(s) 1207
XceI RCATGY 3 cut(s) 1173, 1254, 1436
XhoI CTCGAG 1 cut(s) 1576
XmiI GTMKAC 2 cut(s) 675, 1387
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 4 cut(s) 234, 666, 1067, 1085
ZrmI AGTACT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.