Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0014418

Physical Location & Seq

Genomic Coordinates Forward (+)

96687 .. 97814

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgaagtctcatattcaagcccttgaagagcgtgcacatgcagcaacaattcaaagcactgtttttggacagctagctgcggaagcactacccaaaagcctccattgtctagatatcaagctcacagctgattggctgaaaaaggcttctatacaagtacttgcagatgagaagaggaactctcccagactcatggataacaatctctaccatttctgcatattttcagataatgtgttggctacctctgctgtcgtaaactctaccgtctccaatgctgaccatccaaaacagctggtcttccacattgtcaccaatggagtcaactatggtacgatgcaggcttggttcctcagtaatgatttcaaaggatccgccatagaggtgcagaatgttgaggagttgtcttggtttaatgcctcttatgcgcctatcgtgaaacagctcctcgatccagattcacgggcctacttttttgggggatatcaagatttgaatgttgataccaagttgcggaaccctaagcatctatctttgctcaatcacctccgcttttacatcccagagatctatccacagctggaaaaggtagtttttcttgatgatgatgttgttgtccagaaggatctgaccccacttttctcattggatttgcatggaaatgtgaatggagcagtggaaacttgtcttgaagcatttcatcgatattataggtatctcaatttctcaaacacaatcatcagctcgaagtttgatccacaggcatgtggatgggcatttggtatgaatgtttttgatttgatcgcttggaggaaagcgaatgcaactgcacggtaccattactggcaggagcagaatgctgatgggactctctggaagttgggcactcttcctcctggccttcttactttttatggtctgacagaaccgcttgataggagatggcatgtattaggactggggtatgatctgaatattgacaaccgtttgattgagagtgcagcggtaatccactataatggctacatgaagccatggctgaagttggccattggcagatacaagcctctttgggaacgatatgtaaatcaaagccacccatatctccaagattgtgtcacaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009987 GO:0010191 GO:0010192 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0047262

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

375

Amino Acids

42.94

Weight (kDa)

6.39

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18580
fragaria_vesca	FvH4_5g13450
malus_domestica	MD06G1204900.v1.1 MD14G1216000.v1.1
prunus_persica	Prupe.5G208900_v2.0.a1 Prupe.5G209400_v2.0.a1
pyrus_communis	pycom14g17880
rosa_chinensis	RchiOBHm_Chr7g0183671
rosa_laevigata	RLG00000005034
rosa_multiflora	Rmu_sc0003610.1_g000023
rosa_roxburghii	Rroxscaffold_3G00270340
rosa_rugosa	Rorug06G0459300
rosa_samantha	Rh7AG060000 Rh7BG060100 Rh7CG061700 Rh7DG060100
rosa_wichuraiana	Rw7G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	834
AccB1I	GGYRCC	1 cut(s)	834
AciI	CCGC	6 cut(s)	80, 375, 514, 550, 929, 1004
AclWI	GGATC	5 cut(s)	366, 379, 446, 633, 749
AcoI	YGGCCR	1 cut(s)	1047
AcuI	CTGAAG	1 cut(s)	1061
AfaI	GTAC	3 cut(s)	159, 334, 836
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	17, 26, 53, 367, 496, 692
AjnI	CCWGG	1 cut(s)	895
AluBI	AGCT	8 cut(s)	73, 77, 121, 128, 295, 445, 580, 744
AluI	AGCT	8 cut(s)	73, 77, 121, 128, 295, 445, 580, 744
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	12, 274
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	5 cut(s)	366, 379, 446, 633, 749
AoxI	GGCC	3 cut(s)	465, 898, 1047
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	41, 77, 1001
Asp700I	GAANNNNTTC	1 cut(s)	696
Asp718I	GGTACC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	304, 536
AsuNHI	GCTAGC	1 cut(s)	73
BaeGI	GKGCMC	2 cut(s)	37, 887
BalI	TGGCCA	1 cut(s)	1049
BamHI	GGATCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	834
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	53, 64, 1013
BccI	CCATC	4 cut(s)	291, 765, 857, 936
BciT130I	CCWGG	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	12, 274
BfaI	CTAG	2 cut(s)	74, 110
BglII	AGATCT	1 cut(s)	567
BisI	GCNGC	3 cut(s)	42, 78, 1002
BlsI	GCNGC	3 cut(s)	43, 79, 1003
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	897
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	4 cut(s)	350, 373, 518, 836
BmrFI	CCNGG	1 cut(s)	897
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	2 cut(s)	327, 535
BmtI	GCTAGC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bpu10I	CCTNAGC	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	1034
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	848, 963
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	897
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	1 cut(s)	1034
BseGI	GGATG	3 cut(s)	283, 558, 776
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	848, 963
BseRI	GAGGAG	2 cut(s)	413, 437
BseSI	GKGCMC	2 cut(s)	37, 887
BseXI	GCAGC	3 cut(s)	53, 64, 1013
BsgI	GTGCAG	3 cut(s)	407, 813, 1020
BshFI	GGCC	3 cut(s)	467, 900, 1049
BshNI	GGYRCC	1 cut(s)	834
BshVI	ATCGAT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	12, 274
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	880
BsmI	GAATGC	2 cut(s)	826, 862
BsnI	GGCC	3 cut(s)	467, 900, 1049
Bsp1286I	GDGCHC	2 cut(s)	37, 887
Bsp143I	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
Bsp19I	CCATGG	1 cut(s)	1034
BspACI	CCGC	6 cut(s)	80, 375, 514, 550, 929, 1004
BspANI	GGCC	3 cut(s)	467, 900, 1049
BspCNI	CTCAG	1 cut(s)	366
BspDI	ATCGAT	1 cut(s)	703
BspLI	GGNNCC	4 cut(s)	350, 373, 518, 836
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	5 cut(s)	366, 379, 446, 633, 749
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	848, 963
BssECI	CCNNGG	1 cut(s)	1034
BssMI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
BssT1I	CCWWGG	1 cut(s)	1034
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	4 cut(s)	61, 268, 834, 986
Bst6I	CTCTTC	3 cut(s)	21, 167, 894
BstC8I	GCNNGC	3 cut(s)	33, 75, 342
BstDEI	CTNAG	2 cut(s)	353, 522
BstDSI	CCRYGG	1 cut(s)	1034
BstF5I	GGATG	3 cut(s)	283, 558, 776
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	7 cut(s)	374, 454, 570, 628, 757, 804, 970
BstMAI	GTCTC	2 cut(s)	12, 274
BstMBI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 83, 248, 425
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	3 cut(s)	41, 768, 950
BstSCI	CCNGG	1 cut(s)	895
BstSLI	GKGCMC	2 cut(s)	37, 887
BstV1I	GCAGC	3 cut(s)	53, 64, 1013
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	3 cut(s)	371, 567, 625
BstXI	CCANNNNNNTGG	2 cut(s)	193, 1019
BstYI	RGATCY	3 cut(s)	371, 567, 625
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	467, 900, 1049
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	1 cut(s)	1034
BtsCI	GGATG	3 cut(s)	283, 558, 776
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	57, 681
Cac8I	GCNNGC	3 cut(s)	33, 75, 342
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	158, 333, 835
CviAII	CATG	7 cut(s)	38, 193, 656, 765, 947, 1027, 1035
CviQI	GTAC	3 cut(s)	158, 333, 835
DdeI	CTNAG	2 cut(s)	353, 522
DpnI	GATC	7 cut(s)	373, 453, 569, 627, 756, 803, 969
DpnII	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
EaeI	YGGCCR	1 cut(s)	1047
Eam1104I	CTCTTC	3 cut(s)	21, 167, 894
EarI	CTCTTC	3 cut(s)	21, 167, 894
EciI	GGCGGA	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	1034
Eco32I	GATATC	2 cut(s)	115, 485
Eco57I	CTGAAG	1 cut(s)	1061
EcoRII	CCWGG	1 cut(s)	895
EcoRV	GATATC	2 cut(s)	115, 485
EcoT14I	CCWWGG	1 cut(s)	1034
ErhI	CCWWGG	1 cut(s)	1034
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	7 cut(s)	37, 192, 655, 764, 946, 1026, 1034
Fnu4HI	GCNGC	3 cut(s)	42, 78, 1002
FokI	GGATG	3 cut(s)	270, 545, 783
Fsp4HI	GCNGC	3 cut(s)	42, 78, 1002
FspBI	CTAG	2 cut(s)	74, 110
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	3 cut(s)	42, 78, 1002
HaeIII	GGCC	3 cut(s)	467, 900, 1049
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	189, 321, 458, 868
HphI	GGTGA	2 cut(s)	304, 536
Hpy166II	GTNNAC	3 cut(s)	35, 259, 325
Hpy188I	TCNGA	4 cut(s)	229, 630, 921, 972
Hpy188III	TCNNGA	8 cut(s)	110, 436, 455, 488, 599, 619, 689, 874
Hpy8I	GTNNAC	3 cut(s)	35, 259, 325
HpyAV	CCTTC	2 cut(s)	616, 911
HpyCH4III	ACNGT	4 cut(s)	61, 268, 834, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 83, 248, 425
HpyF3I	CTNAG	2 cut(s)	353, 522
Hsp92II	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
HspAI	GCGC	1 cut(s)	428
KpnI	GGTACC	1 cut(s)	838
Kzo9I	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	450, 671, 850
Lsp1109I	GCAGC	3 cut(s)	53, 64, 1013
LweI	GCATC	2 cut(s)	327, 535
MaeI	CTAG	2 cut(s)	74, 110
MaeIII	GTNAC	2 cut(s)	310, 1117
MalI	GATC	7 cut(s)	373, 453, 569, 627, 756, 803, 969
MboI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
MboII	GAAGA	4 cut(s)	38, 184, 292, 881
MflI	RGATCY	3 cut(s)	371, 567, 625
MhlI	GDGCHC	2 cut(s)	37, 887
MlsI	TGGCCA	1 cut(s)	1049
MluCI	AATT	2 cut(s)	48, 721
MluNI	TGGCCA	1 cut(s)	1049
MlyI	GAGTC	3 cut(s)	183, 330, 862
Mox20I	TGGCCA	1 cut(s)	1049
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	1049
MseI	TTAA	2 cut(s)	414, 1126
MslI	CAYNNNNRTG	5 cut(s)	383, 660, 763, 769, 1017
Msp20I	TGGCCA	1 cut(s)	1049
MspA1I	CMGCKG	4 cut(s)	128, 295, 580, 1004
MspR9I	CCNGG	1 cut(s)	897
Mva1269I	GAATGC	2 cut(s)	826, 862
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	4 cut(s)	41, 83, 248, 425
NcoI	CCATGG	1 cut(s)	1034
NdeII	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
NlaIV	GGNNCC	4 cut(s)	350, 373, 518, 836
NmuCI	GTSAC	2 cut(s)	310, 1117
NspI	RCATGY	3 cut(s)	41, 768, 950
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	2 cut(s)	826, 862
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	43, 79, 1003
PleI	GAGTC	3 cut(s)	183, 329, 862
PpsI	GAGTC	3 cut(s)	183, 329, 862
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	4 cut(s)	350, 373, 518, 836
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	3 cut(s)	371, 567, 625
PvuII	CAGCTG	3 cut(s)	128, 295, 580
RsaI	GTAC	3 cut(s)	159, 334, 836
RsaNI	GTAC	3 cut(s)	158, 333, 835
RseI	CAYNNNNRTG	5 cut(s)	383, 660, 763, 769, 1017
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	414, 1126
SatI	GCNGC	3 cut(s)	42, 78, 1002
Sau3AI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
Sau96I	GGNCC	1 cut(s)	465
ScaI	AGTACT	1 cut(s)	159
SchI	GAGTC	3 cut(s)	183, 330, 862
ScrFI	CCNGG	1 cut(s)	897
SduI	GDGCHC	2 cut(s)	37, 887
SfaNI	GCATC	2 cut(s)	327, 535
SmiMI	CAYNNNNRTG	5 cut(s)	383, 660, 763, 769, 1017
Sse9I	AATT	2 cut(s)	48, 721
SsiI	CCGC	6 cut(s)	80, 375, 514, 550, 929, 1004
SspI	AATATT	1 cut(s)	976
SspMI	CTAG	2 cut(s)	74, 110
StyD4I	CCNGG	1 cut(s)	895
StyI	CCWWGG	1 cut(s)	1034
TaaI	ACNGT	4 cut(s)	61, 268, 834, 986
TaqI	TCGA	3 cut(s)	450, 703, 746
TasI	AATT	2 cut(s)	48, 721
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	414, 1126
Tru9I	TTAA	2 cut(s)	414, 1126
TscAI	CASTG	2 cut(s)	64, 681
TseFI	GTSAC	2 cut(s)	310, 1117
TseI	GCWGC	3 cut(s)	41, 77, 1001
Tsp45I	GTSAC	2 cut(s)	310, 1117
TspDTI	ATGAA	4 cut(s)	17, 689, 800, 1043
TspRI	CASTG	2 cut(s)	64, 681
VneI	GTGCAC	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	3 cut(s)	41, 768, 950
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	74, 110
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.