Rorug06G0459300

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014418
Physical Location & Seq
Reverse (-)
58618054 .. 58619079
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0459300.1

Sequence Viewer

Length: 1026 bp
ATGGAGGGTCTGAGCCGATCGTCACTCCGAGTTCTCAACATGGATAATCTTCCTCGATTACTAGCTAGGTATCCAAACTTAGCCACATTCGAAACACCCAAGAGAATGAGCAATGCCGATCTCGCATTGGTGGCCCAAACTGGAGGCCTTCAAACTATTGAGGAAATTGAAATGCAAGACATCCGCGCACTGGTACGATATGAATTAGAATTAGCGATCTCTGTTGATGAAGTAAGGGAGATATTACGGGTGGTTCATCAAGTTGGGGACGAAGGTTTGTGCGCTTTGGCAAATGGGTGTCCCAAATTGTCCGAGATTGTGCTCAAGAGGAGAAGGGTTGGGATGGTTGGAATCATGGCCATGATCACTTCAGCAGCACATCACTTGACTCATTTGGATTTGGAACATTGTTCTTCGGTTTCGGACCAAGCCCTTGAAGCAATTGGGTCCTCTGCTTGTCCCATTCGCGTTTTGAATTTGAAAGGTTGCTCCATTACTGGAGCCGGATTGAGATTTTTGGCAAATGGGTGTTGCTCAAAAACCATCGAGCAATTGAACCTTGCGTACTGCCCTGGAATCACTAATGACGGGGTCTTGCTTTTGTGCAAGATGCGTGTCTTGGAGGAGCTGGATTTGTCCTTCGGTAGCGAGCTAACTGATGTTGGAGGACAGGCAATCTCTGCAATTCAAACCCTCAAGAAGTTGAACTTGGCCTGTGTATTCTCCCTGACAGAAAAAACTATTGTAGCTCTTGCTAAGAATTGCATAAACTTGGAGATGCTTAATCTACGTGGTGGTTTAGGGGTCACTGCAGCTGCTATTGATGCATTTTTGGGTCACAAATGCTTGCAATCCCTTAATCTAATTGGTTGTTTGTTTGATGATGTTAGAGGATCTGCATTAGAAAGCCTAGCGCTTCAATGCCCTTCATTGAAGTCAATTGTGGTGAATGAAAAATGGAGAGATAGGCTGTTGCAGGAAATGCAAGAGAGTACTGTTAGCAGATTCCTGCAATTCAAGAACTGA

Protein Analysis

341

Amino Acids

37.12

Weight (kDa)

6.12

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 96 - 278 2.4e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18580
fragaria_vesca FvH4_5g13450
malus_domestica MD06G1204900.v1.1 MD14G1216000.v1.1
prunus_persica Prupe.5G208900_v2.0.a1 Prupe.5G209400_v2.0.a1
pyrus_communis pycom14g17880
rosa_chinensis RchiOBHm_Chr7g0183671
rosa_laevigata RLG00000005034
rosa_multiflora Rmu_sc0003610.1_g000023
rosa_roxburghii Rroxscaffold_3G00270340
rosa_rugosa Rorug06G0459300
rosa_samantha Rh7AG060000 Rh7BG060100 Rh7CG061700 Rh7DG060100
rosa_wichuraiana Rw7G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 186, 468
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 901
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 3 cut(s) 195, 566, 994
AfeI AGCGCT 1 cut(s) 915
AfiI CCNNNNNNNGG 1 cut(s) 190
AjnI CCWGG 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 5 cut(s) 65, 628, 652, 749, 815
AluI AGCT 5 cut(s) 65, 628, 652, 749, 815
Alw21I GWGCWC 1 cut(s) 324
AlwI GGATC 1 cut(s) 901
Aor51HI AGCGCT 1 cut(s) 915
AoxI GGCC 4 cut(s) 132, 145, 357, 711
ApeKI GCWGC 3 cut(s) 374, 812, 815
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 3 cut(s) 188, 284, 916
AspS9I GGNCC 3 cut(s) 133, 424, 447
AsuHPI GGTGA 1 cut(s) 958
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 2 cut(s) 424, 447
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 386, 802, 824
BccI CCATC 2 cut(s) 337, 551
BciT130I CCWGG 1 cut(s) 573
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 363
BfaI CTAG 3 cut(s) 62, 66, 911
BfmI CTRYAG 1 cut(s) 810
BfoI RGCGCY 1 cut(s) 917
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 3 cut(s) 375, 813, 816
BlsI GCNGC 3 cut(s) 376, 814, 817
BmcAI AGTACT 1 cut(s) 994
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 2 cut(s) 424, 447
BmgT120I GGNCC 3 cut(s) 133, 424, 447
BmiI GGNNCC 2 cut(s) 448, 502
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 3 cut(s) 600, 768, 814
BpmI CTGGAG 2 cut(s) 162, 519
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 308, 680
BsaAI YACGTR 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 571
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 3 cut(s) 145, 195, 502
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 2 cut(s) 180, 348
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 3 cut(s) 145, 195, 502
BseRI GAGGAG 2 cut(s) 343, 638
BseXI GCAGC 3 cut(s) 386, 802, 824
Bsh1236I CGCG 2 cut(s) 186, 468
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 4 cut(s) 134, 147, 359, 713
BsiEI CGRYCG 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 3 cut(s) 281, 285, 444
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 3 cut(s) 281, 285, 444
BsnI GGCC 4 cut(s) 134, 147, 359, 713
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 5 cut(s) 17, 118, 216, 363, 893
BspACI CCGC 1 cut(s) 184
BspANI GGCC 4 cut(s) 134, 147, 359, 713
BspFNI CGCG 2 cut(s) 186, 468
BspLI GGNNCC 2 cut(s) 448, 502
BspMAI CTGCAG 1 cut(s) 814
BspPI GGATC 1 cut(s) 901
BspT104I TTCGAA 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 3 cut(s) 145, 195, 502
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 5 cut(s) 17, 118, 216, 363, 893
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 997
BstAPI GCANNNNNTGC 2 cut(s) 680, 982
BstBAI YACGTR 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 650, 848
BstDEI CTNAG 3 cut(s) 11, 79, 756
BstF5I GGATG 2 cut(s) 180, 348
BstFNI CGCG 2 cut(s) 186, 468
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 3 cut(s) 188, 284, 916
BstKTI GATC 5 cut(s) 20, 121, 219, 366, 896
BstMBI GATC 5 cut(s) 17, 118, 216, 363, 893
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 6 cut(s) 122, 131, 437, 680, 824, 982
BstNI CCWGG 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 810
BstUI CGCG 2 cut(s) 186, 468
BstV1I GCAGC 3 cut(s) 386, 802, 824
BstX2I RGATCY 1 cut(s) 893
BstYI RGATCY 1 cut(s) 893
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 4 cut(s) 134, 147, 359, 713
BtsCI GGATG 2 cut(s) 180, 348
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 2 cut(s) 188, 807
Cac8I GCNNGC 2 cut(s) 650, 848
CfoI GCGC 3 cut(s) 188, 284, 916
Cfr13I GGNCC 3 cut(s) 133, 424, 447
Csp6I GTAC 3 cut(s) 194, 565, 993
CviAII CATG 3 cut(s) 40, 355, 361
CviQI GTAC 3 cut(s) 194, 565, 993
DdeI CTNAG 3 cut(s) 11, 79, 756
DpnI GATC 5 cut(s) 19, 120, 218, 365, 895
DpnII GATC 5 cut(s) 17, 118, 216, 363, 893
EaeI YGGCCR 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 424, 447
Eco47III AGCGCT 1 cut(s) 915
Eco57I CTGAAG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 571
EcoT22I ATGCAT 1 cut(s) 829
FaeI CATG 3 cut(s) 43, 358, 364
FaiI YATR 5 cut(s) 41, 201, 356, 362, 767
FalI AAGNNNNNCTT 2 cut(s) 692, 724
FaqI GGGAC 3 cut(s) 281, 285, 444
FatI CATG 3 cut(s) 39, 354, 360
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 375, 813, 816
FokI GGATG 2 cut(s) 167, 355
Fsp4HI GCNGC 3 cut(s) 375, 813, 816
FspBI CTAG 3 cut(s) 62, 66, 911
GlaI GCGC 3 cut(s) 187, 283, 915
GluI GCNGC 3 cut(s) 375, 813, 816
GsuI CTGGAG 2 cut(s) 162, 519
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 4 cut(s) 134, 147, 359, 713
HapII CCGG 1 cut(s) 504
HhaI GCGC 3 cut(s) 188, 284, 916
Hin1II CATG 3 cut(s) 43, 358, 364
Hin6I GCGC 3 cut(s) 186, 282, 914
HinP1I GCGC 3 cut(s) 186, 282, 914
HinfI GANTC 4 cut(s) 351, 388, 576, 1005
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 958
Hpy188I TCNGA 4 cut(s) 12, 29, 313, 424
Hpy188III TCNNGA 3 cut(s) 325, 697, 1018
HpyAV CCTTC 5 cut(s) 158, 266, 327, 649, 936
HpyCH4III ACNGT 1 cut(s) 997
HpyCH4IV ACGT 1 cut(s) 790
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 131, 437, 680, 824, 982
HpyF3I CTNAG 3 cut(s) 11, 79, 756
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 3 cut(s) 43, 358, 364
HspAI GCGC 3 cut(s) 186, 282, 914
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 5 cut(s) 17, 118, 216, 363, 893
LmnI GCTCC 3 cut(s) 494, 500, 625
Lsp1109I GCAGC 3 cut(s) 386, 802, 824
LweI GCATC 3 cut(s) 600, 768, 814
MaeI CTAG 3 cut(s) 62, 66, 911
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 21, 805, 836
MalI GATC 5 cut(s) 19, 120, 218, 365, 895
MboI GATC 5 cut(s) 17, 118, 216, 363, 893
MboII GAAGA 2 cut(s) 41, 405
MfeI CAATTG 3 cut(s) 441, 551, 939
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 2 cut(s) 328, 643
MnlI CCTC 9 cut(s) 63, 137, 154, 321, 460, 616, 659, 704, 884
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 829
MscI TGGCCA 1 cut(s) 359
MseI TTAA 2 cut(s) 783, 858
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 1 cut(s) 573
MunI CAATTG 3 cut(s) 441, 551, 939
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 2 cut(s) 186, 468
MwoI GCNNNNNNNGC 6 cut(s) 122, 131, 437, 680, 824, 982
NdeII GATC 5 cut(s) 17, 118, 216, 363, 893
NlaIII CATG 3 cut(s) 43, 358, 364
NlaIV GGNNCC 2 cut(s) 448, 502
NmuCI GTSAC 3 cut(s) 21, 805, 836
NsiI ATGCAT 1 cut(s) 829
NspV TTCGAA 1 cut(s) 90
PceI AGGCCT 1 cut(s) 147
PfeI GAWTC 3 cut(s) 351, 576, 1005
PflFI GACNNNGTC 1 cut(s) 590
PkrI GCNGC 3 cut(s) 376, 814, 817
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Ppu21I YACGTR 1 cut(s) 791
PpuMI RGGWCCY 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 448, 502
PspPI GGNCC 3 cut(s) 133, 424, 447
PspPPI RGGWCCY 1 cut(s) 447
PsrI GAACNNNNNNTAC 2 cut(s) 548, 580
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 1 cut(s) 893
PsyI GACNNNGTC 1 cut(s) 590
PvuI CGATCG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 195, 566, 994
RsaNI GTAC 3 cut(s) 194, 565, 993
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 783, 858
SatI GCNGC 3 cut(s) 375, 813, 816
Sau3AI GATC 5 cut(s) 17, 118, 216, 363, 893
Sau96I GGNCC 3 cut(s) 133, 424, 447
ScaI AGTACT 1 cut(s) 994
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 3 cut(s) 600, 768, 814
SfcI CTRYAG 1 cut(s) 810
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 424, 447
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 323, 695
SmoI CTYRAG 2 cut(s) 323, 695
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 184
SspMI CTAG 3 cut(s) 62, 66, 911
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 997
TaiI ACGT 1 cut(s) 793
TaqI TCGA 3 cut(s) 55, 90, 546
TatI WGTACW 1 cut(s) 992
TfiI GAWTC 3 cut(s) 351, 576, 1005
Tru1I TTAA 2 cut(s) 783, 858
Tru9I TTAA 2 cut(s) 783, 858
TscAI CASTG 2 cut(s) 195, 814
TseFI GTSAC 3 cut(s) 21, 805, 836
TseI GCWGC 3 cut(s) 374, 812, 815
Tsp45I GTSAC 3 cut(s) 21, 805, 836
TspDTI ATGAA 5 cut(s) 216, 243, 245, 918, 966
TspRI CASTG 2 cut(s) 195, 814
Tth111I GACNNNGTC 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 424, 447
XapI RAATTY 1 cut(s) 475
XspI CTAG 3 cut(s) 62, 66, 911
ZrmI AGTACT 1 cut(s) 994
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.