AT1G19750

WD domain, G-beta repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
6826830 .. 6830330
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19750.1

Sequence Viewer

Length: 1353 bp
ATGTGGAAGGCTTTTAAAGACAGAGAAACCGGTCGATTTCGTTCCAATTCCTTCGCCAATCGATTCAAATCCCGCCGGATTTTGTCTCTCCAGCTCTCTAATCGAAAAGATTTTGTTTCTCCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTGCTCTCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATGTTAAGCGGGCCACCGATTACGAGGCAAGTGGTCTAATTGCCAAGCACAAGTGTATTTTTACTGTCCGTAAGCAACATGAAAATGGACATAAATATGCCATATCCTCTGCCATTTGGTATCCCATTGACACTGGGATGTTCATTACAGGTTCTTTTGATCATTACGTAAAAGTATGGGATACCAATACTTCGCAGGTGGTTGTGGATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCACACGTTAATTGCTGCTGGAACTGATGATGTCCAGGTTCGCCTCTGTGATATTGCTTCTGGGGCATTCTCTCACACATTATCGGGTCACCGTGATGGTGTTATGTCAGTGGAATGGTCTACTTCCAGCGAGTGGGTTTTGTATACTGGGGGGTGTGATGGTGCAATACGTTTCTGGGACATCAGACGTGCTGGATGTTTCCGTGTTCTAGATAACTCACAAACACAACTTGGGGTCCGACCACCAATTTTAAAGCGACCAGCGGTTAGCAGTAAGTTTTTTTCAGCTGCAAAATCTTCTCTGGGGGACCAAAATTGGTTGAAGACATTGCAGAGTAAACACACTGGCAGCCAAAGTGTAAAGGGATCATCTAGCGAGAAACCTTCAGTGGAAAAGTCTCGACAGAAGAGAATTCACCCTGGAATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGTTGTTACTGGCTTAAAGGCAACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGTATTCAAGAATAAGATTGTGGGATATTGAATCTGGACGCAATACCCTGGTGAACTTTGAAACTGGACGCATCCAGACAGACAGAGCGATTCAATTAGATACAAGCGATGATCCAGCTCTCGTATTTGTTCCGTGCATGAAGACTGTGAAGGGTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTACGAAAGCGTGAACACTTGCTGCTTTAATTCCAATGATCAGGAACTATACACAAGTGGCGCAGATAGACAAATAATTGTGTGGTCACCAGGCGGATCCGTGGAAGATGAAATGGCGCAAGGTGAAGTAGCTGAAGATAAAGACAACTGGAGCGACTGA

Protein Analysis

450

Amino Acids

50.0

Weight (kDa)

9.1

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 27 - 222 1.6e-09 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 32 - 140 2.3e-06 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 34 - 159 2.5e-06 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 37 - 149 4.5e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 40 - 232 1.6e-20 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 42 - 180 1.1e-11 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 99 - 223 1.9e-11 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 100 - 234 4.2e-16 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 115 - 223 1.4e-06 TEP-1 second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 120 - 225 2.5e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 127 - 231 8.9e-07 WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st PF24817 157 - 230 2.7e-11 WDHD1 first WD40 domain
WD40_Prp19 PF24814 158 - 232 1.9e-07 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 158 - 228 2.3e-07 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 161 - 234 6.9e-11 THOC3 beta-propeller domain
WD40 PF00400 182 - 219 5.7e-08 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 309 - 427 5.4e-07 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 309 - 427 7.9e-08 WDR5 beta-propeller domain
WD40 PF00400 393 - 427 9.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010987)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 609
AccI GTMKAC 2 cut(s) 596, 620
AciI CCGC 4 cut(s) 73, 223, 740, 1287
AclWI GGATC 4 cut(s) 850, 1100, 1284, 1297
AcsI RAATTY 1 cut(s) 888
AcuI CTGAAG 3 cut(s) 131, 846, 1347
AfiI CCNNNNNNNGG 2 cut(s) 128, 609
AflIII ACRYGT 1 cut(s) 480
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 6 cut(s) 67, 799, 1002, 1025, 1055, 1088
AjiI CACGTC 1 cut(s) 665
AjnI CCWGG 5 cut(s) 433, 510, 895, 1041, 1282
AluBI AGCT 5 cut(s) 94, 203, 764, 1112, 1325
AluI AGCT 5 cut(s) 94, 203, 764, 1112, 1325
Alw26I GTCTC 3 cut(s) 90, 480, 879
AlwI GGATC 4 cut(s) 850, 1100, 1284, 1297
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 6 cut(s) 188, 203, 491, 764, 825, 1215
ApoI RAATTY 1 cut(s) 888
AsiGI ACCGGT 1 cut(s) 29
AspLEI GCGC 2 cut(s) 1256, 1312
AspS9I GGNCC 3 cut(s) 225, 712, 784
AsuHPI GGTGA 5 cut(s) 557, 884, 1057, 1272, 1328
AvaII GGWCC 2 cut(s) 712, 784
BamHI GGATCC 1 cut(s) 1289
BbsI GAAGAC 3 cut(s) 453, 806, 1142
BbvI GCAGC 6 cut(s) 190, 200, 478, 751, 837, 1202
BccI CCATC 4 cut(s) 188, 566, 629, 962
BceAI ACGGC 1 cut(s) 942
BciT130I CCWGG 5 cut(s) 435, 512, 897, 1043, 1284
BciVI GTATCC 2 cut(s) 345, 388
BclI TGATCA 2 cut(s) 373, 1231
BcoDI GTCTC 3 cut(s) 90, 480, 879
BfaI CTAG 3 cut(s) 686, 849, 914
BfuAI ACCTGC 1 cut(s) 400
BfuI GTATCC 2 cut(s) 345, 388
BisI GCNGC 6 cut(s) 189, 204, 492, 765, 826, 1216
BlsI GCNGC 6 cut(s) 190, 205, 493, 766, 827, 1217
Bme1390I CCNGG 5 cut(s) 435, 512, 897, 1043, 1284
Bme18I GGWCC 2 cut(s) 712, 784
BmgBI CACGTC 1 cut(s) 665
BmgT120I GGNCC 3 cut(s) 225, 712, 784
BmiI GGNNCC 4 cut(s) 133, 713, 785, 1291
BmrFI CCNGG 5 cut(s) 435, 512, 897, 1043, 1284
BmrI ACTGGG 2 cut(s) 357, 633
BmsI GCATC 2 cut(s) 1074, 1170
BmuI ACTGGG 2 cut(s) 357, 633
BpiI GAAGAC 3 cut(s) 453, 806, 1142
BpmI CTGGAG 2 cut(s) 74, 204
Bsa29I ATCGAT 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 895, 1041, 1293
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 609
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 6 cut(s) 352, 628, 826, 952, 1063, 1346
Bse3DI GCAATG 2 cut(s) 477, 803
Bse8I GATNNNNATC 1 cut(s) 67
BseBI CCWGG 5 cut(s) 435, 512, 897, 1043, 1284
BseCI ATCGAT 1 cut(s) 61
BseDI CCNNGG 3 cut(s) 895, 1041, 1293
BseGI GGATG 4 cut(s) 357, 677, 978, 1065
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 128, 609
BseMI GCAATG 2 cut(s) 477, 803
BseNI ACTGG 6 cut(s) 352, 628, 826, 952, 1063, 1346
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 6 cut(s) 190, 200, 478, 751, 837, 1202
BseYI CCCAGC 1 cut(s) 989
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 2 cut(s) 30, 76
BslFI GGGAC 2 cut(s) 668, 797
BslI CCNNNNNNNGG 2 cut(s) 128, 609
BsmAI GTCTC 3 cut(s) 90, 480, 879
BsmFI GGGAC 2 cut(s) 668, 797
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
BspACI CCGC 4 cut(s) 73, 223, 740, 1287
BspANI GGCC 1 cut(s) 227
BspDI ATCGAT 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 133, 713, 785, 1291
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 4 cut(s) 850, 1100, 1284, 1297
BsrDI GCAATG 2 cut(s) 477, 803
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 6 cut(s) 352, 628, 826, 952, 1063, 1346
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 895, 1041, 1293
BssMI GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
BssNAI GTATAC 1 cut(s) 621
Bst1107I GTATAC 1 cut(s) 621
Bst2UI CCWGG 5 cut(s) 435, 512, 897, 1043, 1284
Bst4CI ACNGT 3 cut(s) 280, 569, 1141
Bst6I CTCTTC 1 cut(s) 878
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 983
BstDSI CCRYGG 1 cut(s) 1293
BstEII GGTNACC 2 cut(s) 563, 1278
BstF5I GGATG 4 cut(s) 357, 677, 978, 1065
BstHHI GCGC 2 cut(s) 1256, 1312
BstKTI GATC 6 cut(s) 376, 845, 919, 1108, 1234, 1292
BstMAI GTCTC 3 cut(s) 90, 480, 879
BstMBI GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 5 cut(s) 435, 512, 897, 1043, 1284
BstNSI RCATGY 1 cut(s) 1159
BstPI GGTNACC 2 cut(s) 563, 1278
BstSCI CCNGG 5 cut(s) 433, 510, 895, 1041, 1282
BstSNI TACGTA 1 cut(s) 382
BstV1I GCAGC 6 cut(s) 190, 200, 478, 751, 837, 1202
BstV2I GAAGAC 3 cut(s) 453, 806, 1142
BstX2I RGATCY 1 cut(s) 1289
BstYI RGATCY 1 cut(s) 1289
BstZ17I GTATAC 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 61
BsuI GTATCC 2 cut(s) 345, 388
BsuRI GGCC 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 1293
BtgZI GCGATG 1 cut(s) 1116
BtrI CACGTC 1 cut(s) 665
BtsCI GGATG 4 cut(s) 357, 677, 978, 1065
BtsIMutI CAGTG 5 cut(s) 345, 591, 819, 870, 1175
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 2 cut(s) 1256, 1312
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 225, 712, 784
ClaI ATCGAT 1 cut(s) 61
CseI GACGC 2 cut(s) 1041, 1071
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 4 cut(s) 293, 457, 1132, 1156
DdeI CTNAG 1 cut(s) 983
DpnI GATC 6 cut(s) 375, 844, 918, 1107, 1233, 1291
DpnII GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
DraI TTTAAA 3 cut(s) 16, 427, 729
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
EciI GGCGGA 1 cut(s) 1302
Eco105I TACGTA 1 cut(s) 382
Eco32I GATATC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 712, 784
Eco57I CTGAAG 3 cut(s) 131, 846, 1347
Eco91I GGTNACC 2 cut(s) 563, 1278
EcoO65I GGTNACC 2 cut(s) 563, 1278
EcoRI GAATTC 1 cut(s) 888
EcoRII CCWGG 5 cut(s) 433, 510, 895, 1041, 1282
EcoRV GATATC 1 cut(s) 173
FaeI CATG 4 cut(s) 296, 460, 1135, 1159
FaqI GGGAC 2 cut(s) 668, 797
FatI CATG 4 cut(s) 292, 456, 1131, 1155
FauI CCCGC 2 cut(s) 80, 216
FbaI TGATCA 2 cut(s) 373, 1231
FblI GTMKAC 2 cut(s) 596, 620
Fnu4HI GCNGC 6 cut(s) 189, 204, 492, 765, 826, 1216
FokI GGATG 4 cut(s) 364, 684, 985, 1052
Fsp4HI GCNGC 6 cut(s) 189, 204, 492, 765, 826, 1216
FspBI CTAG 3 cut(s) 686, 849, 914
GlaI GCGC 2 cut(s) 1255, 1311
GluI GCNGC 6 cut(s) 189, 204, 492, 765, 826, 1216
GsaI CCCAGC 1 cut(s) 993
GsuI CTGGAG 2 cut(s) 74, 204
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 30, 76
HgaI GACGC 2 cut(s) 1041, 1071
HhaI GCGC 2 cut(s) 1256, 1312
Hin1II CATG 4 cut(s) 296, 460, 1135, 1159
Hin6I GCGC 2 cut(s) 1254, 1310
HinP1I GCGC 2 cut(s) 1254, 1310
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 63, 1025, 1084
HpaI GTTAAC 1 cut(s) 139
HpaII CCGG 2 cut(s) 30, 76
HphI GGTGA 5 cut(s) 557, 884, 1057, 1272, 1328
Hpy166II GTNNAC 7 cut(s) 139, 597, 621, 815, 1048, 1190, 1207
Hpy188I TCNGA 2 cut(s) 662, 716
Hpy188III TCNNGA 8 cut(s) 183, 686, 876, 914, 1002, 1029, 1069, 1235
Hpy8I GTNNAC 7 cut(s) 139, 597, 621, 815, 1048, 1190, 1207
HpyAV CCTTC 4 cut(s) 61, 155, 870, 1138
HpyCH4III ACNGT 3 cut(s) 280, 569, 1141
HpyCH4IV ACGT 4 cut(s) 381, 482, 646, 664
HpyCH4V TGCA 4 cut(s) 641, 767, 808, 1131
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 1 cut(s) 983
HpySE526I ACGT 4 cut(s) 381, 482, 646, 664
Hsp92II CATG 4 cut(s) 296, 460, 1135, 1159
HspAI GCGC 2 cut(s) 1254, 1310
Ksp22I TGATCA 2 cut(s) 373, 1231
KspAI GTTAAC 1 cut(s) 139
Kzo9I GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
LmnI GCTCC 3 cut(s) 137, 185, 1344
Lsp1109I GCAGC 6 cut(s) 190, 200, 478, 751, 837, 1202
LweI GCATC 2 cut(s) 1074, 1170
MaeI CTAG 3 cut(s) 686, 849, 914
MaeII ACGT 4 cut(s) 381, 482, 646, 664
MaeIII GTNAC 3 cut(s) 563, 943, 1278
MalI GATC 6 cut(s) 375, 844, 918, 1107, 1233, 1291
MboI GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
MboII GAAGA 8 cut(s) 453, 765, 811, 895, 971, 1147, 1310, 1340
MflI RGATCY 1 cut(s) 1289
MluCI AATT 9 cut(s) 46, 252, 486, 723, 790, 888, 1088, 1222, 1269
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 5 cut(s) 132, 157, 232, 331, 530
MseI TTAA 8 cut(s) 15, 138, 219, 426, 485, 728, 953, 1221
MslI CAYNNNNRTG 5 cut(s) 297, 309, 350, 570, 936
MspA1I CMGCKG 3 cut(s) 203, 740, 764
MspI CCGG 2 cut(s) 30, 76
MspR9I CCNGG 5 cut(s) 435, 512, 897, 1043, 1284
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 5 cut(s) 435, 512, 897, 1043, 1284
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
NlaIII CATG 4 cut(s) 296, 460, 1135, 1159
NlaIV GGNNCC 4 cut(s) 133, 713, 785, 1291
NmuCI GTSAC 2 cut(s) 563, 1278
NspI RCATGY 1 cut(s) 1159
PaqCI CACCTGC 1 cut(s) 400
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 63, 1025, 1084
PflMI CCANNNNNTGG 1 cut(s) 609
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 6 cut(s) 190, 205, 493, 766, 827, 1217
Ppu21I YACGTR 1 cut(s) 382
Psp6I CCWGG 5 cut(s) 433, 510, 895, 1041, 1282
PspEI GGTNACC 2 cut(s) 563, 1278
PspFI CCCAGC 1 cut(s) 989
PspGI CCWGG 5 cut(s) 433, 510, 895, 1041, 1282
PspN4I GGNNCC 4 cut(s) 133, 713, 785, 1291
PspPI GGNCC 3 cut(s) 225, 712, 784
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 1289
PvuII CAGCTG 2 cut(s) 203, 764
RseI CAYNNNNRTG 5 cut(s) 297, 309, 350, 570, 936
SaqAI TTAA 8 cut(s) 15, 138, 219, 426, 485, 728, 953, 1221
SatI GCNGC 6 cut(s) 189, 204, 492, 765, 826, 1216
Sau3AI GATC 6 cut(s) 373, 842, 916, 1105, 1231, 1289
Sau96I GGNCC 3 cut(s) 225, 712, 784
ScrFI CCNGG 5 cut(s) 435, 512, 897, 1043, 1284
SfaNI GCATC 2 cut(s) 1074, 1170
SinI GGWCC 2 cut(s) 712, 784
SmiMI CAYNNNNRTG 5 cut(s) 297, 309, 350, 570, 936
SnaBI TACGTA 1 cut(s) 382
Sse9I AATT 9 cut(s) 46, 252, 486, 723, 790, 888, 1088, 1222, 1269
SsiI CCGC 4 cut(s) 73, 223, 740, 1287
SspMI CTAG 3 cut(s) 686, 849, 914
StyD4I CCNGG 5 cut(s) 433, 510, 895, 1041, 1282
TaaI ACNGT 3 cut(s) 280, 569, 1141
TaiI ACGT 4 cut(s) 384, 485, 649, 667
TaqI TCGA 4 cut(s) 34, 61, 103, 877
TasI AATT 9 cut(s) 46, 252, 486, 723, 790, 888, 1088, 1222, 1269
TfiI GAWTC 3 cut(s) 63, 1025, 1084
Tru1I TTAA 8 cut(s) 15, 138, 219, 426, 485, 728, 953, 1221
Tru9I TTAA 8 cut(s) 15, 138, 219, 426, 485, 728, 953, 1221
TscAI CASTG 5 cut(s) 352, 591, 826, 870, 1182
TseFI GTSAC 2 cut(s) 563, 1278
TseI GCWGC 6 cut(s) 188, 203, 491, 764, 825, 1215
Tsp45I GTSAC 2 cut(s) 563, 1278
TspDTI ATGAA 4 cut(s) 309, 346, 1148, 1317
TspGWI ACGGA 6 cut(s) 124, 176, 272, 668, 1116, 1282
TspRI CASTG 5 cut(s) 352, 591, 826, 870, 1182
Van91I CCANNNNNTGG 1 cut(s) 609
VpaK11BI GGWCC 2 cut(s) 712, 784
XapI RAATTY 1 cut(s) 888
XbaI TCTAGA 2 cut(s) 685, 913
XceI RCATGY 1 cut(s) 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmiI GTMKAC 2 cut(s) 596, 620
XspI CTAG 3 cut(s) 686, 849, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.