Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010987

Physical Location & Seq

Genomic Coordinates Forward (+)

2527515 .. 2531490

Gene Structure 3976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTGGCGGGAAATCGGCGACAGAGAAGCGGGGAAGCTCCGCCCAAGTTCGTTCTCGAATCGGGTCAAGTCAAATCGGATCCAGACGCTCCAGCTCTCCAATCAGAAAGAAATCGTCTCCCCTCACCGAGGCGCCATCAACTCTCTCCAGGTCGATTTGACGGAGGGGCGATACTTGTTGTCCGGCGCCTCCGACGCGTCGGCCGCCGTGTACGACATCCAGCGCGGCACGGATTGCGAGGGCGGCGGTGCTATTTCTAAGCACAAGGCGATATTCGTGGTGGATAAGCAACATGAGAACGGGCACAAGTATGCGGTGTCGTCGGCGGTTTGGTATCCGGTTGACACCGGACTATTTGTGACGGGTTCTTATGATCATCATATTAATGTGTGGGATACGAACACGACTCAGGTGGTGATGAATTTCAAAATGCCTGGGAAGGTTTATAGGACTGCCATGTCTTCCTTGGCAACTTCTCATATGTTGATTGCTGCTGGAACTGAAGATGTGCAAGTTCGGCTCTGTGATATTGCTTCCGGGGCATTTGCTCACACTCTGTCTGGTCACCGCGATGGTGTAATGACAGTGGAATGGTCTACTTCTAGTGAGTGGGTTTTGGTTACTGGGGGATGTGATGGTGCAATTCGTTTTTGGGACATTAGACGTGCTGGATGTTTTCTTGTTTTAGATCAGTCCCAGTCTCAGCTTGGGAGGCGCCCTCCAGTCCTGCAACGCTCTGCCGCAAATAAGGGTTCAACGGCTAAGCCCTCGTTAGCTAGTCAAAGCTCATTTGCAAAAGCACGGGCACAGCAAAGGAAACATACTAATGGAAATGGTGCAAAATCATCCACCAGTAAAATCCCAGTAAAGGGATCTATGAAGCAAAGATTACATCCAGGAATGTTGTCTAGTCAGGATCGTGCTACTGCTCATTATGGTGCCGTTACTGGGTTAAAAGTTACTGATGACGGCATGTATCTACTAAGTGCAGGTTCTGATTCAAGACTAAGATTGTGGGATATCGAATCTGGCTGCAATACTTTGGTGAACTTTGAAACTGTGCGCCTGCAGACAAGCAAACCCATACAGTTAGCCACAAGCCCCAATTCACCACTTGCTTTTGTTCCATGCATGACAGCTGTGAAGGCATTCGATATGTGGTCAGGCAGGACGGCCCTGACATTTCGTGGTCACTATGAACATGTGAACTGTTGCTGGTTTAGTTTGCAAGATCAGGAACTATACACAGGTGGCAATGATAGACAAATTCTAGTATGGTCACCATCCAGATTGATTTCTGATGAGGTGGATGAAGGACCTGTTAAGGATGAGGATAACTGGAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006283 GO:0006289 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009893 GO:0009987 GO:0010604 GO:0016567 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0045739 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051716 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 map03420 map04120

Pfam Domains

Protein Families

WD40

Protein Analysis

449

Amino Acids

49.28

Weight (kDa)

8.68

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	29 - 157	3.7e-07	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	35 - 150	2.1e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	40 - 231	8.3e-20	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	42 - 180	8e-12	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 223	1.6e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	100 - 234	3.4e-17	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	106 - 223	3e-08	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	115 - 221	1.4e-08	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	117 - 219	8.3e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	120 - 223	9.6e-08	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	157 - 233	1.3e-07	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	157 - 229	1.3e-10	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	158 - 225	1.2e-07	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	162 - 232	3.7e-10	THOC3 beta-propeller domain
WD40	PF00400	183 - 219	9.7e-08	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	305 - 427	2.2e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	306 - 426	1.5e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	307 - 427	1.6e-07	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	307 - 421	7.5e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	309 - 427	1.6e-11	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	364 - 427	4.3e-07	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19750 AT1G19750 AT1G27840 AT1G27840 AT1G27840
fragaria_vesca	FvH4_2g33100
malus_domestica	MD15G1070100.v1.1
prunus_persica	Prupe.1G422900_v2.0.a1
pyrus_communis	pycom15g06610
rosa_chinensis	RchiOBHm_Chr6g0309581
rosa_laevigata	RLG00000010551
rosa_multiflora	Rmu_sc0024715.1_g000001 Rmu_sc0030536.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159300
rosa_rugosa	Rorug06G0372900
rosa_samantha	Rh6AG486500 Rh6BG495900 Rh6CG500800 Rh6DG486700
rosa_wichuraiana	Rw6G042370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	980
AccB1I	GGYRCC	4 cut(s)	131, 185, 714, 938
AccI	GTMKAC	1 cut(s)	596
AccII	CGCG	3 cut(s)	197, 225, 570
AclWI	GGATC	4 cut(s)	73, 86, 880, 924
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	421, 1266
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	3 cut(s)	132, 186, 715
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	4 cut(s)	128, 868, 869, 948
AflIII	ACRYGT	2 cut(s)	195, 1201
AgsI	TTSAA	4 cut(s)	427, 756, 1002, 1055
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	3 cut(s)	147, 433, 895
AluBI	AGCT	6 cut(s)	37, 94, 706, 776, 786, 1139
AluI	AGCT	6 cut(s)	37, 94, 706, 776, 786, 1139
Alw26I	GTCTC	2 cut(s)	121, 705
AlwI	GGATC	4 cut(s)	73, 86, 880, 924
AlwNI	CAGNNNCTG	1 cut(s)	995
AoxI	GGCC	2 cut(s)	201, 1173
ApeKI	GCWGC	2 cut(s)	491, 1032
ApoI	RAATTY	2 cut(s)	421, 1266
AseI	ATTAAT	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	1148
AspLEI	GCGC	5 cut(s)	134, 188, 225, 717, 1065
AspS9I	GGNCC	2 cut(s)	1174, 1316
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	6 cut(s)	116, 427, 557, 1057, 1101, 1272
AvaII	GGWCC	1 cut(s)	1316
BaeGI	GKGCMC	2 cut(s)	306, 808
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	4 cut(s)	131, 185, 714, 938
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	478, 1019
BccI	CCATC	4 cut(s)	143, 566, 629, 1291
BceAI	ACGGC	5 cut(s)	191, 774, 926, 985, 1188
BciT130I	CCWGG	3 cut(s)	149, 435, 897
BciVI	GTATCC	2 cut(s)	345, 388
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	121, 705
BfaI	CTAG	4 cut(s)	603, 777, 909, 1271
BfmI	CTRYAG	1 cut(s)	1067
BfoI	RGCGCY	3 cut(s)	135, 189, 718
BfuAI	ACCTGC	1 cut(s)	980
BfuI	GTATCC	2 cut(s)	345, 388
BisI	GCNGC	6 cut(s)	204, 226, 244, 492, 741, 1033
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	6 cut(s)	205, 227, 245, 493, 742, 1034
Bme1390I	CCNGG	4 cut(s)	149, 435, 538, 897
Bme18I	GGWCC	1 cut(s)	1316
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	2 cut(s)	1174, 1316
BmiI	GGNNCC	5 cut(s)	80, 133, 187, 716, 940
BmrFI	CCNGG	4 cut(s)	149, 435, 538, 897
BmrI	ACTGGG	4 cut(s)	633, 691, 857, 957
BmuI	ACTGGG	4 cut(s)	633, 691, 857, 957
BpiI	GAAGAC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	3 cut(s)	74, 131, 705
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	538
BsaHI	GRCGYC	3 cut(s)	132, 186, 715
BsaJI	CCNNGG	4 cut(s)	127, 434, 465, 537
BsaWI	WCCGGW	2 cut(s)	337, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 868, 869, 948
Bse1I	ACTGG	7 cut(s)	628, 697, 722, 852, 863, 952, 1343
Bse3DI	GCAATG	1 cut(s)	1261
BseBI	CCWGG	3 cut(s)	149, 435, 897
BseDI	CCNNGG	4 cut(s)	127, 434, 465, 537
BseGI	GGATG	8 cut(s)	216, 635, 677, 845, 892, 1283, 1315, 1333
BseLI	CCNNNNNNNGG	4 cut(s)	128, 868, 869, 948
BseMI	GCAATG	1 cut(s)	1261
BseMII	CTCAG	2 cut(s)	422, 716
BseNI	ACTGG	7 cut(s)	628, 697, 722, 852, 863, 952, 1343
BseSI	GKGCMC	2 cut(s)	306, 808
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	478, 1019
BsgI	GTGCAG	1 cut(s)	1008
Bsh1236I	CGCG	3 cut(s)	197, 225, 570
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	203, 1175
BshNI	GGYRCC	4 cut(s)	131, 185, 714, 938
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	4 cut(s)	183, 338, 348, 537
BslFI	GGGAC	2 cut(s)	668, 679
BslI	CCNNNNNNNGG	4 cut(s)	128, 868, 869, 948
BsmAI	GTCTC	2 cut(s)	121, 705
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	2 cut(s)	668, 679
BsmI	GAATGC	1 cut(s)	1148
BsnI	GGCC	2 cut(s)	203, 1175
Bsp1286I	GDGCHC	2 cut(s)	306, 808
Bsp143I	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
Bsp1720I	GCTNAGC	1 cut(s)	762
BspANI	GGCC	2 cut(s)	203, 1175
BspCNI	CTCAG	2 cut(s)	421, 715
BspFNI	CGCG	3 cut(s)	197, 225, 570
BspLI	GGNNCC	5 cut(s)	80, 133, 187, 716, 940
BspMAI	CTGCAG	1 cut(s)	1071
BspMI	ACCTGC	1 cut(s)	980
BspPI	GGATC	4 cut(s)	73, 86, 880, 924
BspT107I	GGYRCC	4 cut(s)	131, 185, 714, 938
BsrDI	GCAATG	1 cut(s)	1261
BsrI	ACTGG	7 cut(s)	628, 697, 722, 852, 863, 952, 1343
BssECI	CCNNGG	4 cut(s)	127, 434, 465, 537
BssMI	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
BssNI	GRCGYC	3 cut(s)	132, 186, 715
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	149, 435, 897
Bst4CI	ACNGT	4 cut(s)	586, 1060, 1089, 1211
BstACI	GRCGYC	3 cut(s)	132, 186, 715
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	1067
BstDEI	CTNAG	6 cut(s)	258, 408, 702, 762, 983, 1007
BstEII	GGTNACC	2 cut(s)	563, 1278
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	8 cut(s)	216, 635, 677, 845, 892, 1283, 1315, 1333
BstFNI	CGCG	3 cut(s)	197, 225, 570
BstH2I	RGCGCY	3 cut(s)	135, 189, 718
BstHHI	GCGC	5 cut(s)	134, 188, 225, 717, 1065
BstKTI	GATC	6 cut(s)	81, 376, 691, 875, 919, 1234
BstMAI	GTCTC	2 cut(s)	121, 705
BstMBI	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	8 cut(s)	194, 203, 234, 243, 517, 539, 712, 1145
BstNI	CCWGG	3 cut(s)	149, 435, 897
BstNSI	RCATGY	2 cut(s)	976, 1205
BstPI	GGTNACC	2 cut(s)	563, 1278
BstSCI	CCNGG	4 cut(s)	147, 433, 536, 895
BstSFI	CTRYAG	1 cut(s)	1067
BstSLI	GKGCMC	2 cut(s)	306, 808
BstUI	CGCG	3 cut(s)	197, 225, 570
BstV1I	GCAGC	2 cut(s)	478, 1019
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	2 cut(s)	78, 872
BstYI	RGATCY	2 cut(s)	78, 872
BstZI	CGGCCG	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	345, 388
BsuRI	GGCC	2 cut(s)	203, 1175
BtgZI	GCGATG	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	8 cut(s)	216, 635, 677, 845, 892, 1283, 1315, 1333
BtsIMutI	CAGTG	1 cut(s)	591
BveI	ACCTGC	1 cut(s)	980
Cac8I	GCNNGC	1 cut(s)	1067
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	5 cut(s)	134, 188, 225, 717, 1065
Cfr13I	GGNCC	2 cut(s)	1174, 1316
CseI	GACGC	3 cut(s)	94, 186, 203
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	6 cut(s)	293, 457, 973, 1128, 1132, 1202
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	6 cut(s)	258, 408, 702, 762, 983, 1007
DinI	GGCGCC	3 cut(s)	133, 187, 716
DpnI	GATC	6 cut(s)	80, 375, 690, 874, 918, 1233
DpnII	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	1021
Eco47I	GGWCC	1 cut(s)	1316
Eco52I	CGGCCG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	2 cut(s)	563, 1278
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	1316
EcoO65I	GGTNACC	2 cut(s)	563, 1278
EcoRII	CCWGG	3 cut(s)	147, 433, 895
EcoRV	GATATC	1 cut(s)	1021
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	1133
EgeI	GGCGCC	3 cut(s)	133, 187, 716
EheI	GGCGCC	3 cut(s)	133, 187, 716
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	6 cut(s)	296, 460, 976, 1131, 1135, 1205
FaqI	GGGAC	2 cut(s)	668, 679
FatI	CATG	6 cut(s)	292, 456, 972, 1127, 1131, 1201
FauI	CCCGC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	6 cut(s)	204, 226, 244, 492, 741, 1033
FokI	GGATG	8 cut(s)	203, 642, 684, 832, 879, 1270, 1322, 1340
Fsp4HI	GCNGC	6 cut(s)	204, 226, 244, 492, 741, 1033
FspBI	CTAG	4 cut(s)	603, 777, 909, 1271
GlaI	GCGC	5 cut(s)	133, 187, 224, 716, 1064
GluI	GCNGC	6 cut(s)	204, 226, 244, 492, 741, 1033
GsuI	CTGGAG	3 cut(s)	74, 131, 705
HaeII	RGCGCY	3 cut(s)	135, 189, 718
HaeIII	GGCC	2 cut(s)	203, 1175
HapII	CCGG	4 cut(s)	183, 338, 348, 537
HgaI	GACGC	3 cut(s)	94, 186, 203
HhaI	GCGC	5 cut(s)	134, 188, 225, 717, 1065
Hin1I	GRCGYC	3 cut(s)	132, 186, 715
Hin1II	CATG	6 cut(s)	296, 460, 976, 1131, 1135, 1205
Hin6I	GCGC	5 cut(s)	132, 186, 223, 715, 1063
HinP1I	GCGC	5 cut(s)	132, 186, 223, 715, 1063
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	58, 406, 998, 1025
HpaII	CCGG	4 cut(s)	183, 338, 348, 537
HphI	GGTGA	6 cut(s)	116, 427, 557, 1057, 1101, 1272
Hpy166II	GTNNAC	5 cut(s)	211, 343, 597, 1048, 1207
Hpy188I	TCNGA	5 cut(s)	78, 105, 193, 997, 1300
Hpy188III	TCNNGA	6 cut(s)	55, 82, 914, 1002, 1235, 1287
Hpy8I	GTNNAC	5 cut(s)	211, 343, 597, 1048, 1207
Hpy99I	CGWCG	3 cut(s)	197, 202, 325
HpyAV	CCTTC	3 cut(s)	433, 1138, 1307
HpyCH4III	ACNGT	4 cut(s)	586, 1060, 1089, 1211
HpyCH4IV	ACGT	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	8 cut(s)	194, 203, 234, 243, 517, 539, 712, 1145
HpyF3I	CTNAG	6 cut(s)	258, 408, 702, 762, 983, 1007
HpySE526I	ACGT	1 cut(s)	664
Hsp92I	GRCGYC	3 cut(s)	132, 186, 715
Hsp92II	CATG	6 cut(s)	296, 460, 976, 1131, 1135, 1205
HspAI	GCGC	5 cut(s)	132, 186, 223, 715, 1063
KasI	GGCGCC	3 cut(s)	131, 185, 714
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
LmnI	GCTCC	2 cut(s)	42, 93
Lsp1109I	GCAGC	2 cut(s)	478, 1019
MaeI	CTAG	4 cut(s)	603, 777, 909, 1271
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	7 cut(s)	358, 563, 619, 943, 958, 1190, 1278
MalI	GATC	6 cut(s)	80, 375, 690, 874, 918, 1233
MboI	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
MboII	GAAGA	2 cut(s)	453, 515
MflI	RGATCY	2 cut(s)	78, 872
MhlI	GDGCHC	2 cut(s)	306, 808
MluCI	AATT	4 cut(s)	421, 642, 1105, 1266
MluI	ACGCGT	1 cut(s)	195
Mly113I	GGCGCC	3 cut(s)	132, 186, 715
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	1133
MroXI	GAANNNNTTC	1 cut(s)	1148
MseI	TTAA	3 cut(s)	384, 953, 1323
MslI	CAYNNNNRTG	5 cut(s)	309, 384, 570, 825, 936
MspA1I	CMGCKG	1 cut(s)	1139
MspI	CCGG	4 cut(s)	183, 338, 348, 537
MspR9I	CCNGG	4 cut(s)	149, 435, 538, 897
Mva1269I	GAATGC	1 cut(s)	1148
MvaI	CCWGG	3 cut(s)	149, 435, 897
MvnI	CGCG	3 cut(s)	197, 225, 570
MwoI	GCNNNNNNNGC	8 cut(s)	194, 203, 234, 243, 517, 539, 712, 1145
NarI	GGCGCC	3 cut(s)	132, 186, 715
NciI	CCSGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
NlaIII	CATG	6 cut(s)	296, 460, 976, 1131, 1135, 1205
NlaIV	GGNNCC	5 cut(s)	80, 133, 187, 716, 940
NmuCI	GTSAC	4 cut(s)	358, 563, 1190, 1278
NsiI	ATGCAT	1 cut(s)	1133
NspI	RCATGY	2 cut(s)	976, 1205
PciI	ACATGT	1 cut(s)	1201
PctI	GAATGC	1 cut(s)	1148
PdmI	GAANNNNTTC	1 cut(s)	1148
PfeI	GAWTC	3 cut(s)	58, 998, 1025
PfoI	TCCNGGA	1 cut(s)	895
PkrI	GCNGC	6 cut(s)	205, 227, 245, 493, 742, 1034
PleI	GAGTC	1 cut(s)	400
PluTI	GGCGCC	3 cut(s)	135, 189, 718
PpsI	GAGTC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	1316
PscI	ACATGT	1 cut(s)	1201
PshBI	ATTAAT	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	1316
Psp6I	CCWGG	3 cut(s)	147, 433, 895
PspEI	GGTNACC	2 cut(s)	563, 1278
PspGI	CCWGG	3 cut(s)	147, 433, 895
PspN4I	GGNNCC	5 cut(s)	80, 133, 187, 716, 940
PspPI	GGNCC	2 cut(s)	1174, 1316
PspPPI	RGGWCCY	1 cut(s)	1316
PstI	CTGCAG	1 cut(s)	1071
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	78, 872
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	5 cut(s)	309, 384, 570, 825, 936
SaqAI	TTAA	3 cut(s)	384, 953, 1323
SatI	GCNGC	6 cut(s)	204, 226, 244, 492, 741, 1033
Sau3AI	GATC	6 cut(s)	78, 373, 688, 872, 916, 1231
Sau96I	GGNCC	2 cut(s)	1174, 1316
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	4 cut(s)	149, 435, 538, 897
SduI	GDGCHC	2 cut(s)	306, 808
SfcI	CTRYAG	1 cut(s)	1067
SfoI	GGCGCC	3 cut(s)	133, 187, 716
SinI	GGWCC	1 cut(s)	1316
SmiMI	CAYNNNNRTG	5 cut(s)	309, 384, 570, 825, 936
Sse9I	AATT	4 cut(s)	421, 642, 1105, 1266
SspDI	GGCGCC	3 cut(s)	131, 185, 714
SspMI	CTAG	4 cut(s)	603, 777, 909, 1271
StyD4I	CCNGG	4 cut(s)	147, 433, 536, 895
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	586, 1060, 1089, 1211
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	4 cut(s)	56, 153, 1023, 1152
TasI	AATT	4 cut(s)	421, 642, 1105, 1266
TauI	GCSGC	4 cut(s)	206, 228, 246, 743
TfiI	GAWTC	3 cut(s)	58, 998, 1025
Tru1I	TTAA	3 cut(s)	384, 953, 1323
Tru9I	TTAA	3 cut(s)	384, 953, 1323
TscAI	CASTG	1 cut(s)	591
TseFI	GTSAC	4 cut(s)	358, 563, 1190, 1278
TseI	GCWGC	2 cut(s)	491, 1032
Tsp45I	GTSAC	4 cut(s)	358, 563, 1190, 1278
TspDTI	ATGAA	4 cut(s)	434, 893, 1212, 1326
TspGWI	ACGGA	2 cut(s)	176, 245
TspRI	CASTG	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	1316
VspI	ATTAAT	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	421, 1266
XceI	RCATGY	2 cut(s)	976, 1205
XcmI	CCANNNNNNNNNTGG	2 cut(s)	463, 704
XmiI	GTMKAC	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	1148
XspI	CTAG	4 cut(s)	603, 777, 909, 1271
Zsp2I	ATGCAT	1 cut(s)	1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.