Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014937

Physical Location & Seq

Genomic Coordinates Forward (+)

7272526 .. 7274072

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAAGGCGGTTACGAGCAAGGCGGTGGAGCTTCTAGATACTTCCATAACCTCTTTAGACCGGAGATTCACCACCAACAGCTTCAACCGCAGGGCGGGATCAATCTTATCGACCAGCATCATCATCAGCACCAGCAACATCAACAACAACAACAACCGTCGGATGATTCAAGAGAATCTGACCATTCAAACAAAGATCATCATCAACAGGGTCGACCCGATTCAGACCCGAATACATCAAGCTCAGCACCGGGAAAACGTCCACGTGGACGTCCACCAGGATCTAAGAACAAAGCCAAGCCACCGATCATAGTAACTCGTGATAGCCCCAACGCGCTTAGATCTCACGTTCTTGAAGTATCTCCTGGAGCTGACATAGTTGAGAGTGTTTCCACGTACGCTAGGAGGAGAGGGAGAGGCGTCTCCGTTTTAGGAGGAAACGGCACCGTATCTAACGTCACTCTCCGTCAGCCAGTCACTCCTGGAAATGGCGGTGGTGTGTCCGGAGGAGGAGGAGTTGTGACTTTACATGGAAGGTTTGAGATTCTTTCGCTAACGGGGACTGTTTTGCCACCTCCTGCACCGCCTGGTGCCGGTGGTTTGTCTATATTTTTAGCCGGAGGGCAAGGTCAGGTGGTCGGAGGAAGCGTTGTGGCTCCCCTTATTGCATCAGCTCCGGTTATACTAATGGCGGCTTCGTTCTCAAATGCGGTTTTCGAGAGACTACCGATTGAGGAGGAGGAAGAAGAAGGTGGTGGTGGCGGAGGAGGAGGAGGAGGAGGGCCACCGCAGATGCAACAAGCTCCATCAGCATCTCCGCCGTCTGGAGTGACCGGTCAGGGACAGTTAGGAGGTAATGTGGGTGGTTATGGGTTTTCTGGTGATCCTCATTTGCTTGGATGGGGAGCTGGAACACCTTCAAGACCACCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009889 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048366 GO:0048367 GO:0048519 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

311

Amino Acids

31.84

Weight (kDa)

6.7

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	114 - 235	3e-21	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20900 AT1G76500
fragaria_vesca	FvH4_5g26230
malus_domestica	MD06G1003000.v1.1
prunus_persica	Prupe.5G004600_v2.0.a1
pyrus_communis	pycom06g00310
rosa_chinensis	RchiOBHm_Chr7g0216901
rosa_laevigata	RLG00000002528
rosa_multiflora	Rmu_sc0000854.1_g000020
rosa_roxburghii	Rroxscaffold_3G00242760
rosa_rugosa	Rorug07G0164300
rosa_samantha	Rh7AG304600 Rh7BG296100 Rh7CG323000 Rh7DG304600
rosa_wichuraiana	Rw7G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	443, 590
AccI	GTMKAC	1 cut(s)	214
AccII	CGCG	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	503
AclWI	GGATC	3 cut(s)	107, 289, 878
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	2 cut(s)	271, 420
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	4 cut(s)	95, 488, 593, 824
AgeI	ACCGGT	1 cut(s)	833
AgsI	TTSAA	5 cut(s)	86, 171, 189, 356, 921
AjnI	CCWGG	4 cut(s)	277, 364, 481, 586
AluBI	AGCT	7 cut(s)	32, 82, 243, 371, 674, 803, 908
AluI	AGCT	7 cut(s)	32, 82, 243, 371, 674, 803, 908
Alw26I	GTCTC	2 cut(s)	427, 715
AlwI	GGATC	3 cut(s)	107, 289, 878
Aor13HI	TCCGGA	1 cut(s)	503
AoxI	GGCC	1 cut(s)	782
AsiGI	ACCGGT	1 cut(s)	833
Asp700I	GAANNNNTTC	1 cut(s)	916
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	782
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	62, 893
BanI	GGYRCC	2 cut(s)	443, 590
BauI	CACGAG	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	266
BccI	CCATC	2 cut(s)	814, 894
BceAI	ACGGC	2 cut(s)	457, 805
BciT130I	CCWGG	4 cut(s)	279, 366, 483, 588
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	427, 715
BfaI	CTAG	2 cut(s)	36, 402
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	1 cut(s)	693
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	694
Bme1390I	CCNGG	5 cut(s)	252, 279, 366, 483, 588
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	3 cut(s)	445, 592, 657
BmrFI	CCNGG	5 cut(s)	252, 279, 366, 483, 588
BmsI	GCATC	4 cut(s)	127, 677, 783, 821
BpmI	CTGGAG	2 cut(s)	387, 846
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	252
BsaAI	YACGTR	2 cut(s)	266, 396
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	271, 420
BsaWI	WCCGGW	4 cut(s)	61, 503, 676, 833
BsaXI	ACNNNNNCTCC	8 cut(s)	501, 504, 531, 534, 633, 663, 843, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 488, 593, 824
Bse118I	RCCGGY	2 cut(s)	593, 833
Bse1I	ACTGG	1 cut(s)	473
Bse8I	GATNNNNATC	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	503
BseBI	CCWGG	4 cut(s)	279, 366, 483, 588
BseGI	GGATG	2 cut(s)	169, 905
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	4 cut(s)	95, 488, 593, 824
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	784
BshNI	GGYRCC	2 cut(s)	443, 590
BshTI	ACCGGT	1 cut(s)	833
BsiSI	CCGG	7 cut(s)	62, 251, 504, 594, 618, 677, 834
BsiWI	CGTACG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	574, 855
BslI	CCNNNNNNNGG	4 cut(s)	95, 488, 593, 824
BsmAI	GTCTC	2 cut(s)	427, 715
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	574, 855
BsnI	GGCC	1 cut(s)	784
Bsp13I	TCCGGA	1 cut(s)	503
Bsp143I	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
Bsp1720I	GCTNAGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	1 cut(s)	257
BspEI	TCCGGA	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	445, 592, 657
BspPI	GGATC	3 cut(s)	107, 289, 878
BspT107I	GGYRCC	2 cut(s)	443, 590
BsrFI	RCCGGY	2 cut(s)	593, 833
BsrI	ACTGG	1 cut(s)	473
BssAI	RCCGGY	2 cut(s)	593, 833
BssMI	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
BssNI	GRCGYC	2 cut(s)	271, 420
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	4 cut(s)	279, 366, 483, 588
Bst4CI	ACNGT	4 cut(s)	159, 448, 565, 846
BstACI	GRCGYC	2 cut(s)	271, 420
BstBAI	YACGTR	2 cut(s)	266, 396
BstDEI	CTNAG	3 cut(s)	244, 285, 338
BstF5I	GGATG	2 cut(s)	169, 905
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	6 cut(s)	102, 199, 284, 309, 344, 886
BstMAI	GTCTC	2 cut(s)	427, 715
BstMBI	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 809
BstNI	CCWGG	4 cut(s)	279, 366, 483, 588
BstSCI	CCNGG	5 cut(s)	250, 277, 364, 481, 586
BstUI	CGCG	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	281, 341
BstYI	RGATCY	2 cut(s)	281, 341
BsuRI	GGCC	1 cut(s)	784
BtsCI	GGATG	2 cut(s)	169, 905
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	2 cut(s)	593, 833
Cfr13I	GGNCC	1 cut(s)	782
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	833
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	3 cut(s)	244, 285, 338
DpnI	GATC	6 cut(s)	101, 198, 283, 308, 343, 885
DpnII	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
EciI	GGCGGA	2 cut(s)	777, 807
Eco72I	CACGTG	1 cut(s)	266
EcoRII	CCWGG	4 cut(s)	277, 364, 481, 586
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	1 cut(s)	533
FaiI	YATR	7 cut(s)	48, 311, 377, 531, 608, 683, 870
FalI	AAGNNNNNCTT	1 cut(s)	913
FaqI	GGGAC	2 cut(s)	574, 855
FatI	CATG	1 cut(s)	529
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	2 cut(s)	176, 912
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	2 cut(s)	36, 402
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	693
GsuI	CTGGAG	2 cut(s)	387, 846
HaeIII	GGCC	1 cut(s)	784
HapII	CCGG	7 cut(s)	62, 251, 504, 594, 618, 677, 834
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	337
Hin1I	GRCGYC	2 cut(s)	271, 420
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HinfI	GANTC	5 cut(s)	67, 167, 176, 221, 544
HpaII	CCGG	7 cut(s)	62, 251, 504, 594, 618, 677, 834
HphI	GGTGA	2 cut(s)	62, 893
Hpy166II	GTNNAC	4 cut(s)	215, 263, 269, 275
Hpy188I	TCNGA	4 cut(s)	163, 181, 226, 641
Hpy188III	TCNNGA	8 cut(s)	36, 171, 320, 353, 504, 718, 825, 921
Hpy8I	GTNNAC	4 cut(s)	215, 263, 269, 275
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	528, 743, 927
HpyCH4III	ACNGT	4 cut(s)	159, 448, 565, 846
HpyCH4IV	ACGT	6 cut(s)	259, 265, 271, 348, 395, 456
HpyCH4V	TGCA	3 cut(s)	581, 668, 796
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 809
HpyF3I	CTNAG	3 cut(s)	244, 285, 338
HpySE526I	ACGT	6 cut(s)	259, 265, 271, 348, 395, 456
Hsp92I	GRCGYC	2 cut(s)	271, 420
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	503
Kzo9I	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
LmnI	GCTCC	6 cut(s)	29, 368, 661, 679, 808, 905
LweI	GCATC	4 cut(s)	127, 677, 783, 821
MaeI	CTAG	2 cut(s)	36, 402
MaeII	ACGT	6 cut(s)	259, 265, 271, 348, 395, 456
MaeIII	GTNAC	6 cut(s)	11, 313, 457, 475, 520, 829
MalI	GATC	6 cut(s)	101, 198, 283, 308, 343, 885
MboI	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
MboII	GAAGA	2 cut(s)	755, 758
MflI	RGATCY	2 cut(s)	281, 341
MmeI	TCCRAC	2 cut(s)	141, 619
MroI	TCCGGA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	916
MseI	TTAA	1 cut(s)	934
MspI	CCGG	7 cut(s)	62, 251, 504, 594, 618, 677, 834
MspR9I	CCNGG	5 cut(s)	252, 279, 366, 483, 588
MvaI	CCWGG	4 cut(s)	279, 366, 483, 588
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	88, 809
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	3 cut(s)	445, 592, 657
NmuCI	GTSAC	4 cut(s)	457, 475, 520, 829
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	916
PfeI	GAWTC	5 cut(s)	67, 167, 176, 221, 544
Pfl23II	CGTACG	1 cut(s)	396
PfoI	TCCNGGA	2 cut(s)	364, 481
PinAI	ACCGGT	1 cut(s)	833
PkrI	GCNGC	1 cut(s)	694
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
Ppu21I	YACGTR	2 cut(s)	266, 396
Psp6I	CCWGG	4 cut(s)	277, 364, 481, 586
PspCI	CACGTG	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	277, 364, 481, 586
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	445, 592, 657
PspPI	GGNCC	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	281, 341
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SalI	GTCGAC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	934
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	6 cut(s)	99, 196, 281, 306, 341, 883
Sau96I	GGNCC	1 cut(s)	782
ScrFI	CCNGG	5 cut(s)	252, 279, 366, 483, 588
SfaNI	GCATC	4 cut(s)	127, 677, 783, 821
SspMI	CTAG	2 cut(s)	36, 402
StyD4I	CCNGG	5 cut(s)	250, 277, 364, 481, 586
TaaI	ACNGT	4 cut(s)	159, 448, 565, 846
TaiI	ACGT	6 cut(s)	262, 268, 274, 351, 398, 459
TaqI	TCGA	3 cut(s)	111, 214, 717
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	5 cut(s)	67, 167, 176, 221, 544
Tru1I	TTAA	1 cut(s)	934
Tru9I	TTAA	1 cut(s)	934
TseFI	GTSAC	4 cut(s)	457, 475, 520, 829
Tsp45I	GTSAC	4 cut(s)	457, 475, 520, 829
TspGWI	ACGGA	2 cut(s)	415, 455
XbaI	TCTAGA	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	916
XspI	CTAG	2 cut(s)	36, 402
ZraI	GACGTC	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.