Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014937

Physical Location & Seq

Genomic Coordinates Forward (+)

28704963 .. 28706691

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGACGGTGGTTACGATCAATCCGGAGGAGCTTCTAGATACTTTCACAACCTCTTCAGGCCTGAGCTTCATCACCAGCTTCAACCTCAGCCTCAACTTCACCCTTTGCCTCAGCCTCAGCCTCAACCTCAGCCTCAGCAGCAGAATTCAGATGATGAATCTGACTCCAACAAGGATCCGGGTTCCGACCCAGTTACCTCTGGTTCAACCGGGAAACGTCCACGTGGACGTCCTCCGGGATCCAAGAACAAGCCGAAGCCACCGGTGATAGTGACTAGAGATAGCCCCAACGTGCTTAGATCTCATGTTCTTGAAGTCTCATCTGGAGCCGACATAGTCGAGAGCGTTACCACTTACGCTCGCAGGAGAGGAAGAGGAGTCTCCATTCTCAGTGGTAACGGCACGGTGGCTAACGTCAGTCTCCGGCAGCCGGCAACGACAGCGGCTCATGGGGCAAATGGTGGAACCGGAGGTGTTGTGGCTCTACATGGAAGGTTTGAGATACTTTCCCTCACAGGTACGGTGTTGCCGCCCCCTGCGCCGCCAGGATCCGGTGGTCTTTCTATCTTTCTTTCCGGCGTTCAAGGTCAGGTGATTGGAGGAAACGTGGTGGCTCCGCTTGTGGCTTCGGGTCCAGTGATACTAATGGCTGCATCGTTCTCTAATGCAACTTTCGAAAGGCTTCCCCTTGAAGATGAAGGAGGAGAAGGTGGAGAGGGAGGAGAAGTTGGAGAGGGAGGAGGAGGAGAAGGTGGTCCACCGCCGGCCACGTCATCATCACCACCATCTGGAGCCGGTCAAGGACAGTTAAGAGGTAACATGAGTGGTTATGATCAGTTTGCCGGTGATCCTCATTTGCTTGGTTGGGGAGCCGCAGCCGCAGCCGCACCACCAAGACCAGCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009889 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048366 GO:0048367 GO:0048519 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

302

Amino Acids

30.61

Weight (kDa)

6.05

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	100 - 221	3.3e-21	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20900 AT1G76500
fragaria_vesca	FvH4_5g26230
malus_domestica	MD06G1003000.v1.1
prunus_persica	Prupe.5G004600_v2.0.a1
pyrus_communis	pycom06g00310
rosa_chinensis	RchiOBHm_Chr7g0216901
rosa_laevigata	RLG00000002528
rosa_multiflora	Rmu_sc0000854.1_g000020
rosa_roxburghii	Rroxscaffold_3G00242760
rosa_rugosa	Rorug07G0164300
rosa_samantha	Rh7AG304600 Rh7BG296100 Rh7CG323000 Rh7DG304600
rosa_wichuraiana	Rw7G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	8 cut(s)	443, 530, 542, 617, 761, 873, 879, 885
AclWI	GGATC	7 cut(s)	170, 183, 234, 247, 543, 556, 842
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	40
AcvI	CACGTG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	3 cut(s)	430, 551, 788
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	5 cut(s)	83, 207, 314, 584, 692
AjiI	CACGTC	1 cut(s)	771
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	3 cut(s)	32, 67, 79
AluI	AGCT	3 cut(s)	32, 67, 79
Alw26I	GTCTC	3 cut(s)	322, 385, 425
AlwI	GGATC	7 cut(s)	170, 183, 234, 247, 543, 556, 842
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	2 cut(s)	59, 765
ApeKI	GCWGC	5 cut(s)	139, 427, 650, 875, 881
ApoI	RAATTY	1 cut(s)	145
AsiGI	ACCGGT	1 cut(s)	262
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	632, 755
AsuC2I	CCSGG	3 cut(s)	180, 211, 237
AsuHPI	GGTGA	6 cut(s)	65, 92, 277, 604, 771, 857
AsuII	TTCGAA	1 cut(s)	675
AvaII	GGWCC	2 cut(s)	632, 755
BamHI	GGATCC	3 cut(s)	175, 239, 548
BbrPI	CACGTG	1 cut(s)	224
BbvCI	CCTCAGC	5 cut(s)	87, 111, 117, 129, 135
BbvI	GCAGC	5 cut(s)	151, 439, 637, 887, 893
BccI	CCATC	1 cut(s)	793
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	3 cut(s)	180, 211, 237
BcoDI	GTCTC	3 cut(s)	322, 385, 425
BfaI	CTAG	2 cut(s)	36, 276
BglII	AGATCT	1 cut(s)	299
Bme1390I	CCNGG	4 cut(s)	180, 211, 237, 546
Bme18I	GGWCC	2 cut(s)	632, 755
BmgBI	CACGTC	1 cut(s)	771
BmgT120I	GGNCC	2 cut(s)	632, 755
BmrFI	CCNGG	4 cut(s)	180, 211, 237, 546
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	662
BmuI	ACTGGG	1 cut(s)	185
BpmI	CTGGAG	2 cut(s)	345, 810
Bpu10I	CCTNAGC	6 cut(s)	63, 87, 111, 117, 129, 135
Bpu14I	TTCGAA	1 cut(s)	675
BpuMI	CCSGG	3 cut(s)	180, 211, 237
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	229
BsaWI	WCCGGW	4 cut(s)	23, 262, 467, 551
BsaXI	ACNNNNNCTCC	6 cut(s)	462, 492, 591, 621, 711, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 551, 788
Bse118I	RCCGGY	5 cut(s)	262, 430, 763, 794, 842
Bse1I	ACTGG	2 cut(s)	191, 635
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	546
BseLI	CCNNNNNNNGG	3 cut(s)	430, 551, 788
BseMII	CTCAG	7 cut(s)	54, 101, 125, 131, 143, 149, 403
BseNI	ACTGG	2 cut(s)	191, 635
BseRI	GAGGAG	7 cut(s)	42, 390, 717, 735, 753, 756, 759
BseXI	GCAGC	5 cut(s)	151, 439, 637, 887, 893
BshFI	GGCC	2 cut(s)	61, 767
BshTI	ACCGGT	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	430, 551, 788
BsmAI	GTCTC	3 cut(s)	322, 385, 425
BsnI	GGCC	2 cut(s)	61, 767
Bsp119I	TTCGAA	1 cut(s)	675
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
BspACI	CCGC	8 cut(s)	443, 530, 542, 617, 761, 873, 879, 885
BspANI	GGCC	2 cut(s)	61, 767
BspCNI	CTCAG	7 cut(s)	55, 100, 124, 130, 142, 148, 402
BspEI	TCCGGA	1 cut(s)	23
BspPI	GGATC	7 cut(s)	170, 183, 234, 247, 543, 556, 842
BspT104I	TTCGAA	1 cut(s)	675
BsrFI	RCCGGY	5 cut(s)	262, 430, 763, 794, 842
BsrI	ACTGG	2 cut(s)	191, 635
BssAI	RCCGGY	5 cut(s)	262, 430, 763, 794, 842
BssMI	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
BssNI	GRCGYC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	8, 406, 523, 807
Bst6I	CTCTTC	2 cut(s)	59, 367
BstACI	GRCGYC	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	361, 432, 765
BstDEI	CTNAG	8 cut(s)	63, 87, 111, 117, 129, 135, 296, 389
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	7 cut(s)	19, 178, 242, 302, 551, 835, 850
BstMAI	GTCTC	3 cut(s)	322, 385, 425
BstMBI	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 440, 452, 538, 878, 881, 884
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	4 cut(s)	178, 209, 235, 544
BstV1I	GCAGC	5 cut(s)	151, 439, 637, 887, 893
BstX2I	RGATCY	4 cut(s)	175, 239, 299, 548
BstYI	RGATCY	4 cut(s)	175, 239, 299, 548
BsuRI	GGCC	2 cut(s)	61, 767
BtrI	CACGTC	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	397, 642
Cac8I	GCNNGC	3 cut(s)	361, 432, 765
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	5 cut(s)	262, 430, 763, 794, 842
Cfr13I	GGNCC	2 cut(s)	632, 755
Csp6I	GTAC	1 cut(s)	519
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	4 cut(s)	305, 449, 488, 820
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	8 cut(s)	63, 87, 111, 117, 129, 135, 296, 389
DpnI	GATC	7 cut(s)	18, 177, 241, 301, 550, 834, 849
DpnII	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	2 cut(s)	59, 367
EarI	CTCTTC	2 cut(s)	59, 367
Eco147I	AGGCCT	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	632, 755
Eco57I	CTGAAG	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	544
FaeI	CATG	4 cut(s)	308, 452, 491, 823
FaiI	YATR	6 cut(s)	306, 335, 450, 489, 821, 831
FatI	CATG	4 cut(s)	304, 448, 487, 819
FbaI	TGATCA	1 cut(s)	832
FspBI	CTAG	2 cut(s)	36, 276
GlaI	GCGC	1 cut(s)	540
GsuI	CTGGAG	2 cut(s)	345, 810
HaeIII	GGCC	2 cut(s)	61, 767
HhaI	GCGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	308, 452, 491, 823
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HinfI	GANTC	3 cut(s)	158, 164, 378
HphI	GGTGA	6 cut(s)	65, 92, 277, 604, 771, 857
Hpy166II	GTNNAC	3 cut(s)	221, 227, 758
Hpy188I	TCNGA	3 cut(s)	151, 163, 187
Hpy188III	TCNNGA	6 cut(s)	24, 36, 311, 324, 340, 789
Hpy8I	GTNNAC	3 cut(s)	221, 227, 758
HpyAV	CCTTC	4 cut(s)	486, 692, 701, 743
HpyCH4III	ACNGT	4 cut(s)	8, 406, 523, 807
HpyCH4IV	ACGT	7 cut(s)	217, 223, 229, 291, 414, 606, 770
HpyCH4V	TGCA	2 cut(s)	653, 668
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 440, 452, 538, 878, 881, 884
HpyF3I	CTNAG	8 cut(s)	63, 87, 111, 117, 129, 135, 296, 389
HpySE526I	ACGT	7 cut(s)	217, 223, 229, 291, 414, 606, 770
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	308, 452, 491, 823
HspAI	GCGC	1 cut(s)	539
Kpn2I	TCCGGA	1 cut(s)	23
KroI	GCCGGC	2 cut(s)	430, 763
KroNI	GCCGGC	2 cut(s)	432, 765
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
LmnI	GCTCC	5 cut(s)	29, 326, 619, 791, 869
Lsp1109I	GCAGC	5 cut(s)	151, 439, 637, 887, 893
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	2 cut(s)	36, 276
MaeII	ACGT	7 cut(s)	217, 223, 229, 291, 414, 606, 770
MaeIII	GTNAC	6 cut(s)	11, 193, 271, 346, 395, 815
MalI	GATC	7 cut(s)	18, 177, 241, 301, 550, 834, 849
MboI	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
MboII	GAAGA	3 cut(s)	46, 384, 704
MflI	RGATCY	4 cut(s)	175, 239, 299, 548
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	158, 387
MmeI	TCCRAC	3 cut(s)	192, 210, 709
MroI	TCCGGA	1 cut(s)	23
MroNI	GCCGGC	2 cut(s)	430, 763
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	4 cut(s)	180, 211, 237, 546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	7 cut(s)	139, 440, 452, 538, 878, 881, 884
NaeI	GCCGGC	2 cut(s)	432, 765
NciI	CCSGG	3 cut(s)	180, 211, 237
NdeII	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
NgoMIV	GCCGGC	2 cut(s)	430, 763
NlaIII	CATG	4 cut(s)	308, 452, 491, 823
NmuCI	GTSAC	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PdiI	GCCGGC	2 cut(s)	432, 765
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	788
PfoI	TCCNGGA	1 cut(s)	235
PinAI	ACCGGT	1 cut(s)	262
PleI	GAGTC	2 cut(s)	158, 386
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	2 cut(s)	158, 386
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	544
PspCI	CACGTG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	544
PspPI	GGNCC	2 cut(s)	632, 755
PsuI	RGATCY	4 cut(s)	175, 239, 299, 548
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	809
Sau3AI	GATC	7 cut(s)	16, 175, 239, 299, 548, 832, 847
Sau96I	GGNCC	2 cut(s)	632, 755
SchI	GAGTC	2 cut(s)	158, 387
ScrFI	CCNGG	4 cut(s)	180, 211, 237, 546
SfaNI	GCATC	1 cut(s)	662
SfuI	TTCGAA	1 cut(s)	675
SgrAI	CRCCGGYG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	632, 755
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	8 cut(s)	443, 530, 542, 617, 761, 873, 879, 885
SspMI	CTAG	2 cut(s)	36, 276
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	4 cut(s)	178, 209, 235, 544
TaaI	ACNGT	4 cut(s)	8, 406, 523, 807
TaiI	ACGT	7 cut(s)	220, 226, 232, 294, 417, 609, 773
TaqI	TCGA	2 cut(s)	339, 675
TasI	AATT	1 cut(s)	145
TauI	GCSGC	6 cut(s)	446, 532, 544, 875, 881, 887
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TscAI	CASTG	2 cut(s)	397, 642
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	139, 427, 650, 875, 881
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	59, 171, 711
TspRI	CASTG	2 cut(s)	397, 642
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	632, 755
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	36, 276
ZraI	GACGTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.