Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20900 AT1G76500 |
| fragaria_vesca | FvH4_5g26230 |
| malus_domestica | MD06G1003000.v1.1 |
| prunus_persica | Prupe.5G004600_v2.0.a1 |
| pyrus_communis | pycom06g00310 |
| rosa_chinensis | RchiOBHm_Chr7g0216901 |
| rosa_laevigata | RLG00000002528 |
| rosa_multiflora | Rmu_sc0000854.1_g000020 |
| rosa_roxburghii | Rroxscaffold_3G00242760 |
| rosa_rugosa | Rorug07G0164300 |
| rosa_samantha | Rh7AG304600 Rh7BG296100 Rh7CG323000 Rh7DG304600 |
| rosa_wichuraiana | Rw7G025860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 458 |
| AccBSI | CCGCTC | 2 cut(s) | 357, 450 |
| AccI | GTMKAC | 1 cut(s) | 26 |
| AccII | CGCG | 3 cut(s) | 334, 336, 943 |
| AccIII | TCCGGA | 1 cut(s) | 721 |
| AclWI | GGATC | 1 cut(s) | 713 |
| AcvI | CACGTG | 1 cut(s) | 364 |
| AfaI | GTAC | 3 cut(s) | 733, 829, 937 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 423, 575, 646, 728, 743, 902 |
| AgsI | TTSAA | 1 cut(s) | 865 |
| AjnI | CCWGG | 2 cut(s) | 416, 568 |
| AluBI | AGCT | 1 cut(s) | 67 |
| AluI | AGCT | 1 cut(s) | 67 |
| Alw26I | GTCTC | 1 cut(s) | 409 |
| AlwI | GGATC | 1 cut(s) | 713 |
| Aor13HI | TCCGGA | 1 cut(s) | 721 |
| AoxI | GGCC | 5 cut(s) | 283, 637, 814, 856, 944 |
| ApaI | GGGCCC | 1 cut(s) | 641 |
| ApeKI | GCWGC | 3 cut(s) | 453, 674, 884 |
| AspLEI | GCGC | 2 cut(s) | 336, 386 |
| AspS9I | GGNCC | 5 cut(s) | 263, 637, 638, 656, 905 |
| AsuC2I | CCSGG | 1 cut(s) | 541 |
| AsuHPI | GGTGA | 2 cut(s) | 817, 833 |
| AvaII | GGWCC | 3 cut(s) | 263, 656, 905 |
| BaeGI | GKGCMC | 1 cut(s) | 641 |
| BanI | GGYRCC | 1 cut(s) | 458 |
| BanII | GRGCYC | 1 cut(s) | 641 |
| BbrPI | CACGTG | 1 cut(s) | 364 |
| BbvCI | CCTCAGC | 1 cut(s) | 34 |
| BbvI | GCAGC | 3 cut(s) | 465, 661, 871 |
| BccI | CCATC | 5 cut(s) | 105, 129, 236, 416, 664 |
| BceAI | ACGGC | 1 cut(s) | 801 |
| BciT130I | CCWGG | 2 cut(s) | 418, 570 |
| BcnI | CCSGG | 1 cut(s) | 541 |
| BcoDI | GTCTC | 1 cut(s) | 409 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 282, 294 |
| BlpI | GCTNAGC | 1 cut(s) | 446 |
| BmcAI | AGTACT | 1 cut(s) | 937 |
| Bme1390I | CCNGG | 3 cut(s) | 418, 541, 570 |
| Bme18I | GGWCC | 3 cut(s) | 263, 656, 905 |
| BmgT120I | GGNCC | 5 cut(s) | 263, 637, 638, 656, 905 |
| BmiI | GGNNCC | 7 cut(s) | 264, 265, 298, 460, 564, 639, 906 |
| BmrFI | CCNGG | 3 cut(s) | 418, 541, 570 |
| BmrI | ACTGGG | 1 cut(s) | 840 |
| BmuI | ACTGGG | 1 cut(s) | 840 |
| BpmI | CTGGAG | 1 cut(s) | 552 |
| Bpu10I | CCTNAGC | 1 cut(s) | 34 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 446 |
| BpuMI | CCSGG | 1 cut(s) | 541 |
| BsaAI | YACGTR | 1 cut(s) | 364 |
| BsaJI | CCNNGG | 2 cut(s) | 817, 941 |
| BsaWI | WCCGGW | 2 cut(s) | 653, 721 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 423, 575, 646, 728, 743, 902 |
| Bse1I | ACTGG | 5 cut(s) | 216, 659, 745, 814, 835 |
| BseAI | TCCGGA | 1 cut(s) | 721 |
| BseBI | CCWGG | 2 cut(s) | 418, 570 |
| BseDI | CCNNGG | 2 cut(s) | 817, 941 |
| BseGI | GGATG | 1 cut(s) | 721 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 423, 575, 646, 728, 743, 902 |
| BseMII | CTCAG | 2 cut(s) | 48, 437 |
| BseNI | ACTGG | 5 cut(s) | 216, 659, 745, 814, 835 |
| BseRI | GAGGAG | 2 cut(s) | 546, 555 |
| BseSI | GKGCMC | 1 cut(s) | 641 |
| BseXI | GCAGC | 3 cut(s) | 465, 661, 871 |
| BsgI | GTGCAG | 1 cut(s) | 626 |
| Bsh1236I | CGCG | 3 cut(s) | 334, 336, 943 |
| BshFI | GGCC | 5 cut(s) | 285, 639, 816, 858, 946 |
| BshNI | GGYRCC | 1 cut(s) | 458 |
| BsiSI | CCGG | 5 cut(s) | 222, 540, 560, 654, 722 |
| BslFI | GGGAC | 4 cut(s) | 249, 556, 594, 624 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 423, 575, 646, 728, 743, 902 |
| BsmAI | GTCTC | 1 cut(s) | 409 |
| BsmBI | CGTCTC | 1 cut(s) | 409 |
| BsmFI | GGGAC | 4 cut(s) | 249, 556, 594, 624 |
| BsnI | GGCC | 5 cut(s) | 285, 639, 816, 858, 946 |
| Bsp120I | GGGCCC | 1 cut(s) | 637 |
| Bsp1286I | GDGCHC | 1 cut(s) | 641 |
| Bsp13I | TCCGGA | 1 cut(s) | 721 |
| Bsp143I | GATC | 2 cut(s) | 169, 718 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 446 |
| BspANI | GGCC | 5 cut(s) | 285, 639, 816, 858, 946 |
| BspCNI | CTCAG | 2 cut(s) | 47, 438 |
| BspEI | TCCGGA | 1 cut(s) | 721 |
| BspFNI | CGCG | 3 cut(s) | 334, 336, 943 |
| BspLI | GGNNCC | 7 cut(s) | 264, 265, 298, 460, 564, 639, 906 |
| BspMAI | CTGCAG | 1 cut(s) | 295 |
| BspPI | GGATC | 1 cut(s) | 713 |
| BspQI | GCTCTTC | 1 cut(s) | 74 |
| BspT107I | GGYRCC | 1 cut(s) | 458 |
| BsrBI | CCGCTC | 2 cut(s) | 357, 450 |
| BsrI | ACTGG | 5 cut(s) | 216, 659, 745, 814, 835 |
| BssECI | CCNNGG | 2 cut(s) | 817, 941 |
| BssMI | GATC | 2 cut(s) | 169, 718 |
| BssT1I | CCWWGG | 1 cut(s) | 817 |
| Bst2UI | CCWGG | 2 cut(s) | 418, 570 |
| Bst4CI | ACNGT | 4 cut(s) | 138, 463, 547, 585 |
| Bst6I | CTCTTC | 3 cut(s) | 74, 513, 720 |
| BstBAI | YACGTR | 1 cut(s) | 364 |
| BstDEI | CTNAG | 2 cut(s) | 34, 446 |
| BstDSI | CCRYGG | 1 cut(s) | 941 |
| BstF5I | GGATG | 1 cut(s) | 721 |
| BstFNI | CGCG | 3 cut(s) | 334, 336, 943 |
| BstHHI | GCGC | 2 cut(s) | 336, 386 |
| BstKTI | GATC | 2 cut(s) | 172, 721 |
| BstMAI | GTCTC | 1 cut(s) | 409 |
| BstMBI | GATC | 2 cut(s) | 169, 718 |
| BstNI | CCWGG | 2 cut(s) | 418, 570 |
| BstSCI | CCNGG | 3 cut(s) | 416, 539, 568 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstSLI | GKGCMC | 1 cut(s) | 641 |
| BstUI | CGCG | 3 cut(s) | 334, 336, 943 |
| BstV1I | GCAGC | 3 cut(s) | 465, 661, 871 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 595 |
| BsuRI | GGCC | 5 cut(s) | 285, 639, 816, 858, 946 |
| BtgI | CCRYGG | 1 cut(s) | 941 |
| BtsCI | GGATG | 1 cut(s) | 721 |
| BtsIMutI | CAGTG | 1 cut(s) | 666 |
| CfoI | GCGC | 2 cut(s) | 336, 386 |
| Cfr13I | GGNCC | 5 cut(s) | 263, 637, 638, 656, 905 |
| Cfr42I | CCGCGG | 1 cut(s) | 944 |
| CseI | GACGC | 2 cut(s) | 391, 525 |
| Csp6I | GTAC | 3 cut(s) | 732, 828, 936 |
| CviAII | CATG | 1 cut(s) | 394 |
| CviQI | GTAC | 3 cut(s) | 732, 828, 936 |
| DdeI | CTNAG | 2 cut(s) | 34, 446 |
| DpnI | GATC | 2 cut(s) | 171, 720 |
| DpnII | GATC | 2 cut(s) | 169, 718 |
| Eam1104I | CTCTTC | 3 cut(s) | 74, 513, 720 |
| EarI | CTCTTC | 3 cut(s) | 74, 513, 720 |
| EciI | GGCGGA | 2 cut(s) | 243, 436 |
| Eco130I | CCWWGG | 1 cut(s) | 817 |
| Eco24I | GRGCYC | 1 cut(s) | 641 |
| Eco47I | GGWCC | 3 cut(s) | 263, 656, 905 |
| Eco72I | CACGTG | 1 cut(s) | 364 |
| EcoO109I | RGGNCCY | 2 cut(s) | 263, 905 |
| EcoRII | CCWGG | 2 cut(s) | 416, 568 |
| EcoT14I | CCWWGG | 1 cut(s) | 817 |
| EcoT38I | GRGCYC | 1 cut(s) | 641 |
| ErhI | CCWWGG | 1 cut(s) | 817 |
| Esp3I | CGTCTC | 1 cut(s) | 409 |
| FaeI | CATG | 1 cut(s) | 397 |
| FaiI | YATR | 3 cut(s) | 395, 590, 881 |
| FaqI | GGGAC | 4 cut(s) | 249, 556, 594, 624 |
| FatI | CATG | 1 cut(s) | 393 |
| FauI | CCCGC | 4 cut(s) | 484, 568, 592, 648 |
| FblI | GTMKAC | 1 cut(s) | 26 |
| FokI | GGATG | 1 cut(s) | 728 |
| FriOI | GRGCYC | 1 cut(s) | 641 |
| GlaI | GCGC | 2 cut(s) | 335, 385 |
| GsuI | CTGGAG | 1 cut(s) | 552 |
| HaeIII | GGCC | 5 cut(s) | 285, 639, 816, 858, 946 |
| HapII | CCGG | 5 cut(s) | 222, 540, 560, 654, 722 |
| HgaI | GACGC | 2 cut(s) | 391, 525 |
| HhaI | GCGC | 2 cut(s) | 336, 386 |
| Hin1II | CATG | 1 cut(s) | 397 |
| Hin6I | GCGC | 2 cut(s) | 334, 384 |
| HinP1I | GCGC | 2 cut(s) | 334, 384 |
| HinfI | GANTC | 3 cut(s) | 17, 146, 194 |
| HpaII | CCGG | 5 cut(s) | 222, 540, 560, 654, 722 |
| HphI | GGTGA | 2 cut(s) | 817, 833 |
| Hpy166II | GTNNAC | 2 cut(s) | 27, 61 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 202 |
| Hpy188III | TCNNGA | 3 cut(s) | 523, 722, 908 |
| Hpy8I | GTNNAC | 2 cut(s) | 27, 61 |
| Hpy99I | CGWCG | 2 cut(s) | 239, 467 |
| HpyAV | CCTTC | 1 cut(s) | 818 |
| HpyCH4III | ACNGT | 4 cut(s) | 138, 463, 547, 585 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 363 |
| HpyCH4V | TGCA | 4 cut(s) | 293, 607, 769, 775 |
| HpyF3I | CTNAG | 2 cut(s) | 34, 446 |
| HpySE526I | ACGT | 2 cut(s) | 57, 363 |
| Hsp92II | CATG | 1 cut(s) | 397 |
| HspAI | GCGC | 2 cut(s) | 334, 384 |
| KflI | GGGWCCC | 1 cut(s) | 263 |
| Kpn2I | TCCGGA | 1 cut(s) | 721 |
| KspI | CCGCGG | 1 cut(s) | 944 |
| Kzo9I | GATC | 2 cut(s) | 169, 718 |
| LguI | GCTCTTC | 1 cut(s) | 74 |
| LmnI | GCTCC | 3 cut(s) | 302, 495, 568 |
| Lsp1109I | GCAGC | 3 cut(s) | 465, 661, 871 |
| MaeII | ACGT | 2 cut(s) | 57, 363 |
| MaeIII | GTNAC | 4 cut(s) | 328, 472, 502, 805 |
| MalI | GATC | 2 cut(s) | 171, 720 |
| MbiI | CCGCTC | 2 cut(s) | 357, 450 |
| MboI | GATC | 2 cut(s) | 169, 718 |
| MboII | GAAGA | 4 cut(s) | 61, 500, 737, 789 |
| MhlI | GDGCHC | 1 cut(s) | 641 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MroI | TCCGGA | 1 cut(s) | 721 |
| MspA1I | CMGCKG | 4 cut(s) | 380, 456, 643, 943 |
| MspI | CCGG | 5 cut(s) | 222, 540, 560, 654, 722 |
| MspR9I | CCNGG | 3 cut(s) | 418, 541, 570 |
| MvaI | CCWGG | 2 cut(s) | 418, 570 |
| MvnI | CGCG | 3 cut(s) | 334, 336, 943 |
| NciI | CCSGG | 1 cut(s) | 541 |
| NdeII | GATC | 2 cut(s) | 169, 718 |
| NlaIII | CATG | 1 cut(s) | 397 |
| NlaIV | GGNNCC | 7 cut(s) | 264, 265, 298, 460, 564, 639, 906 |
| NmuCI | GTSAC | 4 cut(s) | 328, 472, 502, 805 |
| PciSI | GCTCTTC | 1 cut(s) | 74 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 198, 333, 519 |
| PfeI | GAWTC | 2 cut(s) | 146, 194 |
| PfoI | TCCNGGA | 1 cut(s) | 539 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PmaCI | CACGTG | 1 cut(s) | 364 |
| PmlI | CACGTG | 1 cut(s) | 364 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| Ppu21I | YACGTR | 1 cut(s) | 364 |
| PpuMI | RGGWCCY | 2 cut(s) | 263, 905 |
| Psp5II | RGGWCCY | 2 cut(s) | 263, 905 |
| Psp6I | CCWGG | 2 cut(s) | 416, 568 |
| PspCI | CACGTG | 1 cut(s) | 364 |
| PspGI | CCWGG | 2 cut(s) | 416, 568 |
| PspN4I | GGNNCC | 7 cut(s) | 264, 265, 298, 460, 564, 639, 906 |
| PspOMI | GGGCCC | 1 cut(s) | 637 |
| PspPI | GGNCC | 5 cut(s) | 263, 637, 638, 656, 905 |
| PspPPI | RGGWCCY | 2 cut(s) | 263, 905 |
| PstI | CTGCAG | 1 cut(s) | 295 |
| RsaI | GTAC | 3 cut(s) | 733, 829, 937 |
| RsaNI | GTAC | 3 cut(s) | 732, 828, 936 |
| SacII | CCGCGG | 1 cut(s) | 944 |
| SapI | GCTCTTC | 1 cut(s) | 74 |
| Sau3AI | GATC | 2 cut(s) | 169, 718 |
| Sau96I | GGNCC | 5 cut(s) | 263, 637, 638, 656, 905 |
| SbfI | CCTGCAGG | 1 cut(s) | 295 |
| ScaI | AGTACT | 1 cut(s) | 937 |
| SchI | GAGTC | 1 cut(s) | 26 |
| ScrFI | CCNGG | 3 cut(s) | 418, 541, 570 |
| SdaI | CCTGCAGG | 1 cut(s) | 295 |
| SduI | GDGCHC | 1 cut(s) | 641 |
| SetI | ASST | 9 cut(s) | 35, 60, 69, 84, 90, 366, 574, 784, 829 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| Sfr303I | CCGCGG | 1 cut(s) | 944 |
| SgrBI | CCGCGG | 1 cut(s) | 944 |
| SinI | GGWCC | 3 cut(s) | 263, 656, 905 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 295 |
| StyD4I | CCNGG | 3 cut(s) | 416, 539, 568 |
| StyI | CCWWGG | 1 cut(s) | 817 |
| TaaI | ACNGT | 4 cut(s) | 138, 463, 547, 585 |
| TaiI | ACGT | 2 cut(s) | 60, 366 |
| TaqI | TCGA | 2 cut(s) | 192, 522 |
| TatI | WGTACW | 1 cut(s) | 935 |
| TfiI | GAWTC | 2 cut(s) | 146, 194 |
| TscAI | CASTG | 1 cut(s) | 666 |
| TseFI | GTSAC | 4 cut(s) | 328, 472, 502, 805 |
| TseI | GCWGC | 3 cut(s) | 453, 674, 884 |
| Tsp45I | GTSAC | 4 cut(s) | 328, 472, 502, 805 |
| TspGWI | ACGGA | 4 cut(s) | 252, 528, 885, 939 |
| TspRI | CASTG | 1 cut(s) | 666 |
| VpaK11BI | GGWCC | 3 cut(s) | 263, 656, 905 |
| XmiI | GTMKAC | 1 cut(s) | 26 |
| ZrmI | AGTACT | 1 cut(s) | 937 |