AT1G26945

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017495
Physical Location & Seq
Forward (+)
9351160 .. 9352833
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26945.1

Sequence Viewer

Length: 285 bp
ATGTCTAGCAGAAGATCATCACGTTCAAGACAGTCAGGAAGCTCAAGAATCTCTGACGATCAGATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCTGACAAGGTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTACACAGAGAGGTTGATGACCTCAGTGACCGTTTGTCGGAACTCTTGGCTTCGACGGACGACAACAGCGCCGAAGCAGCCATCATTAGGAGCTTGCTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

94

Amino Acids

10.72

Weight (kDa)

9.03

Isoelectric Point (pI)

88.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 18 - 92 1.5e-35 ILI bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26945
fragaria_vesca FvH4_5g15240
malus_domestica MD06G1190200.v1.1
pyrus_communis pycom06g16890
rosa_chinensis RchiOBHm_Chr7g0180851
rosa_roxburghii Rroxscaffold_3G00272470
rosa_rugosa Rorug06G0437000
rosa_samantha Rh7AG038500 Rh7BG038100 Rh7CG039700 Rh7DG038200
rosa_wichuraiana Rw7G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 112, 115
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 214, 264
AgsI TTSAA 1 cut(s) 27
AhdI GACNNNNNGTC 2 cut(s) 130, 211
AluBI AGCT 3 cut(s) 42, 85, 270
AluI AGCT 3 cut(s) 42, 85, 270
Alw26I GTCTC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 3 cut(s) 112, 115, 255
BlsI GCNGC 3 cut(s) 113, 116, 256
BmeRI GACNNNNNGTC 2 cut(s) 130, 211
BmsI GCATC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 264
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 214, 264
BseMII CTCAG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 214, 264
BsmAI GTCTC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 14, 58, 70
BspACI CCGC 2 cut(s) 112, 115
BspCNI CTCAG 1 cut(s) 213
BssMI GATC 3 cut(s) 14, 58, 70
Bst4CI ACNGT 2 cut(s) 33, 209
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 3 cut(s) 81, 141, 200
BstF5I GGATG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 3 cut(s) 17, 61, 73
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 14, 58, 70
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 146
CviJI RGCY 5 cut(s) 42, 85, 227, 257, 270
CviKI_1 RGCY 5 cut(s) 42, 85, 227, 257, 270
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 3 cut(s) 81, 141, 200
DpnI GATC 3 cut(s) 16, 60, 72
DpnII GATC 3 cut(s) 14, 58, 70
DriI GACNNNNNGTC 2 cut(s) 130, 211
Eam1105I GACNNNNNGTC 2 cut(s) 130, 211
Fnu4HI GCNGC 3 cut(s) 112, 115, 255
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 112, 115, 255
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 247
GluI GCNGC 3 cut(s) 112, 115, 255
HaeII RGCGCY 1 cut(s) 249
HhaI GCGC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 1 cut(s) 48
Hpy188I TCNGA 5 cut(s) 55, 63, 70, 124, 217
Hpy188III TCNNGA 4 cut(s) 27, 36, 45, 172
Hpy99I CGWCG 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 33, 209
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 81, 141, 200
HpySE526I ACGT 1 cut(s) 22
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 3 cut(s) 14, 58, 70
LmnI GCTCC 2 cut(s) 90, 267
LpnPI CCDG 3 cut(s) 21, 114, 157
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 16, 60, 72
MboI GATC 3 cut(s) 14, 58, 70
MboII GAAGA 1 cut(s) 24
MluCI AATT 1 cut(s) 277
MmeI TCCRAC 2 cut(s) 112, 195
MnlI CCTC 3 cut(s) 104, 181, 209
MseI TTAA 2 cut(s) 276, 283
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 3 cut(s) 14, 58, 70
NmuCI GTSAC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 113, 116, 256
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 276, 283
SatI GCNGC 3 cut(s) 112, 115, 255
Sau3AI GATC 3 cut(s) 14, 58, 70
SetI ASST 9 cut(s) 25, 44, 87, 96, 132, 147, 192, 201, 272
SfaNI GCATC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 277
SsiI CCGC 2 cut(s) 112, 115
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 33, 209
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 230
TasI AATT 1 cut(s) 277
TauI GCSGC 2 cut(s) 114, 117
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 2 cut(s) 276, 283
Tru9I TTAA 2 cut(s) 276, 283
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 208
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.