transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26945 |
| fragaria_vesca | FvH4_5g15240 |
| malus_domestica | MD06G1190200.v1.1 |
| pyrus_communis | pycom06g16890 |
| rosa_chinensis | RchiOBHm_Chr7g0180851 |
| rosa_roxburghii | Rroxscaffold_3G00272470 |
| rosa_rugosa | Rorug06G0437000 |
| rosa_samantha | Rh7AG038500 Rh7BG038100 Rh7CG039700 Rh7DG038200 |
| rosa_wichuraiana | Rw7G003170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 208 |
| AccI | GTMKAC | 1 cut(s) | 115 |
| AciI | CCGC | 1 cut(s) | 208 |
| AluBI | AGCT | 3 cut(s) | 91, 248, 264 |
| AluI | AGCT | 3 cut(s) | 91, 248, 264 |
| ApeKI | GCWGC | 1 cut(s) | 248 |
| AseI | ATTAAT | 1 cut(s) | 63 |
| BbvI | GCAGC | 1 cut(s) | 235 |
| BfaI | CTAG | 2 cut(s) | 6, 24 |
| BglII | AGATCT | 1 cut(s) | 20 |
| BisI | GCNGC | 2 cut(s) | 209, 249 |
| BlsI | GCNGC | 2 cut(s) | 210, 250 |
| BmsI | GCATC | 1 cut(s) | 146 |
| BpuEI | CTTGAG | 1 cut(s) | 25 |
| BseGI | GGATG | 1 cut(s) | 137 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseXI | GCAGC | 1 cut(s) | 235 |
| Bsp143I | GATC | 4 cut(s) | 20, 55, 67, 196 |
| BspACI | CCGC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BsrBI | CCGCTC | 1 cut(s) | 208 |
| BssMI | GATC | 4 cut(s) | 20, 55, 67, 196 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstDEI | CTNAG | 2 cut(s) | 99, 200 |
| BstF5I | GGATG | 1 cut(s) | 137 |
| BstKTI | GATC | 4 cut(s) | 23, 58, 70, 199 |
| BstMBI | GATC | 4 cut(s) | 20, 55, 67, 196 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 248 |
| BstV1I | GCAGC | 1 cut(s) | 235 |
| BstX2I | RGATCY | 1 cut(s) | 20 |
| BstYI | RGATCY | 1 cut(s) | 20 |
| BtsCI | GGATG | 1 cut(s) | 137 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 237 |
| CviJI | RGCY | 6 cut(s) | 9, 39, 91, 211, 248, 264 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 39, 91, 211, 248, 264 |
| DdeI | CTNAG | 2 cut(s) | 99, 200 |
| DpnI | GATC | 4 cut(s) | 22, 57, 69, 198 |
| DpnII | GATC | 4 cut(s) | 20, 55, 67, 196 |
| FblI | GTMKAC | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 2 cut(s) | 209, 249 |
| FokI | GGATG | 1 cut(s) | 124 |
| Fsp4HI | GCNGC | 2 cut(s) | 209, 249 |
| FspBI | CTAG | 2 cut(s) | 6, 24 |
| GluI | GCNGC | 2 cut(s) | 209, 249 |
| HinfI | GANTC | 2 cut(s) | 45, 103 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 193 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 60, 124, 217 |
| Hpy188III | TCNNGA | 4 cut(s) | 18, 42, 98, 259 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 193 |
| Hpy99I | CGWCG | 1 cut(s) | 56 |
| HpyAV | CCTTC | 1 cut(s) | 6 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 118, 158 |
| HpyCH4V | TGCA | 4 cut(s) | 85, 162, 181, 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 248 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 200 |
| HpySE526I | ACGT | 2 cut(s) | 118, 158 |
| Kzo9I | GATC | 4 cut(s) | 20, 55, 67, 196 |
| LmnI | GCTCC | 1 cut(s) | 261 |
| LpnPI | CCDG | 3 cut(s) | 18, 111, 244 |
| Lsp1109I | GCAGC | 1 cut(s) | 235 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 2 cut(s) | 6, 24 |
| MaeII | ACGT | 2 cut(s) | 118, 158 |
| MalI | GATC | 4 cut(s) | 22, 57, 69, 198 |
| MbiI | CCGCTC | 1 cut(s) | 208 |
| MboI | GATC | 4 cut(s) | 20, 55, 67, 196 |
| MboII | GAAGA | 1 cut(s) | 86 |
| MflI | RGATCY | 1 cut(s) | 20 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MseI | TTAA | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 248 |
| NdeII | GATC | 4 cut(s) | 20, 55, 67, 196 |
| PfeI | GAWTC | 2 cut(s) | 45, 103 |
| PkrI | GCNGC | 2 cut(s) | 210, 250 |
| PshBI | ATTAAT | 1 cut(s) | 63 |
| PsuI | RGATCY | 1 cut(s) | 20 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| SatI | GCNGC | 2 cut(s) | 209, 249 |
| Sau3AI | GATC | 4 cut(s) | 20, 55, 67, 196 |
| SetI | ASST | 9 cut(s) | 17, 37, 93, 121, 132, 161, 192, 250, 266 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 1 cut(s) | 40 |
| SmoI | CTYRAG | 1 cut(s) | 40 |
| SsiI | CCGC | 1 cut(s) | 208 |
| SspMI | CTAG | 2 cut(s) | 6, 24 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 121, 161 |
| TauI | GCSGC | 1 cut(s) | 211 |
| TfiI | GAWTC | 2 cut(s) | 45, 103 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TscAI | CASTG | 2 cut(s) | 150, 244 |
| TseI | GCWGC | 1 cut(s) | 248 |
| TspRI | CASTG | 2 cut(s) | 150, 244 |
| VspI | ATTAAT | 1 cut(s) | 63 |
| XmiI | GTMKAC | 1 cut(s) | 115 |
| XspI | CTAG | 2 cut(s) | 6, 24 |