transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26945 |
| fragaria_vesca | FvH4_5g15240 |
| malus_domestica | MD06G1190200.v1.1 |
| pyrus_communis | pycom06g16890 |
| rosa_chinensis | RchiOBHm_Chr7g0180851 |
| rosa_roxburghii | Rroxscaffold_3G00272470 |
| rosa_rugosa | Rorug06G0437000 |
| rosa_samantha | Rh7AG038500 Rh7BG038100 Rh7CG039700 Rh7DG038200 |
| rosa_wichuraiana | Rw7G003170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 121 |
| AccI | GTMKAC | 1 cut(s) | 115 |
| AclWI | GGATC | 1 cut(s) | 46 |
| AcyI | GRCGYC | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 258 |
| AluBI | AGCT | 4 cut(s) | 91, 220, 248, 264 |
| AluI | AGCT | 4 cut(s) | 91, 220, 248, 264 |
| AlwI | GGATC | 1 cut(s) | 46 |
| ApeKI | GCWGC | 3 cut(s) | 85, 88, 248 |
| AseI | ATTAAT | 1 cut(s) | 63 |
| BbvI | GCAGC | 3 cut(s) | 97, 100, 235 |
| BceAI | ACGGC | 1 cut(s) | 236 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BfaI | CTAG | 2 cut(s) | 6, 24 |
| BglII | AGATCT | 1 cut(s) | 20 |
| BisI | GCNGC | 3 cut(s) | 86, 89, 249 |
| BlsI | GCNGC | 3 cut(s) | 87, 90, 250 |
| BmsI | GCATC | 1 cut(s) | 146 |
| Bpu10I | CCTNAGC | 1 cut(s) | 200 |
| BsaHI | GRCGYC | 1 cut(s) | 118 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 258 |
| BseGI | GGATG | 2 cut(s) | 58, 199 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseXI | GCAGC | 3 cut(s) | 97, 100, 235 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 258 |
| Bsp143I | GATC | 4 cut(s) | 20, 38, 55, 67 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspPI | GGATC | 1 cut(s) | 46 |
| BssMI | GATC | 4 cut(s) | 20, 38, 55, 67 |
| BssNI | GRCGYC | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 2 cut(s) | 113, 145 |
| BstACI | GRCGYC | 1 cut(s) | 118 |
| BstC8I | GCNNGC | 1 cut(s) | 206 |
| BstDEI | CTNAG | 2 cut(s) | 99, 200 |
| BstF5I | GGATG | 2 cut(s) | 58, 199 |
| BstKTI | GATC | 4 cut(s) | 23, 41, 58, 70 |
| BstMBI | GATC | 4 cut(s) | 20, 38, 55, 67 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 248 |
| BstV1I | GCAGC | 3 cut(s) | 97, 100, 235 |
| BstX2I | RGATCY | 1 cut(s) | 20 |
| BstYI | RGATCY | 1 cut(s) | 20 |
| BtsCI | GGATG | 2 cut(s) | 58, 199 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 237 |
| Cac8I | GCNNGC | 1 cut(s) | 206 |
| CviJI | RGCY | 5 cut(s) | 9, 91, 220, 248, 264 |
| CviKI_1 | RGCY | 5 cut(s) | 9, 91, 220, 248, 264 |
| DdeI | CTNAG | 2 cut(s) | 99, 200 |
| DpnI | GATC | 4 cut(s) | 22, 40, 57, 69 |
| DpnII | GATC | 4 cut(s) | 20, 38, 55, 67 |
| FaiI | YATR | 2 cut(s) | 168, 170 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| FblI | GTMKAC | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 3 cut(s) | 86, 89, 249 |
| FokI | GGATG | 2 cut(s) | 65, 206 |
| Fsp4HI | GCNGC | 3 cut(s) | 86, 89, 249 |
| FspBI | CTAG | 2 cut(s) | 6, 24 |
| GluI | GCNGC | 3 cut(s) | 86, 89, 249 |
| Hin1I | GRCGYC | 1 cut(s) | 118 |
| HinfI | GANTC | 2 cut(s) | 45, 103 |
| Hpy166II | GTNNAC | 1 cut(s) | 116 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 217 |
| Hpy188III | TCNNGA | 5 cut(s) | 18, 42, 98, 122, 259 |
| Hpy8I | GTNNAC | 1 cut(s) | 116 |
| HpyAV | CCTTC | 1 cut(s) | 6 |
| HpyCH4III | ACNGT | 2 cut(s) | 113, 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 118, 158 |
| HpyCH4V | TGCA | 4 cut(s) | 85, 162, 181, 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 248 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 200 |
| HpySE526I | ACGT | 2 cut(s) | 118, 158 |
| Hsp92I | GRCGYC | 1 cut(s) | 118 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 4 cut(s) | 20, 38, 55, 67 |
| LmnI | GCTCC | 2 cut(s) | 217, 261 |
| LpnPI | CCDG | 5 cut(s) | 18, 111, 135, 137, 244 |
| Lsp1109I | GCAGC | 3 cut(s) | 97, 100, 235 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 2 cut(s) | 6, 24 |
| MaeII | ACGT | 2 cut(s) | 118, 158 |
| MaeIII | GTNAC | 2 cut(s) | 73, 147 |
| MalI | GATC | 4 cut(s) | 22, 40, 57, 69 |
| MboI | GATC | 4 cut(s) | 20, 38, 55, 67 |
| MboII | GAAGA | 1 cut(s) | 86 |
| MflI | RGATCY | 1 cut(s) | 20 |
| MluCI | AATT | 1 cut(s) | 60 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MseI | TTAA | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 248 |
| NdeII | GATC | 4 cut(s) | 20, 38, 55, 67 |
| NmuCI | GTSAC | 1 cut(s) | 73 |
| PfeI | GAWTC | 2 cut(s) | 45, 103 |
| PkrI | GCNGC | 3 cut(s) | 87, 90, 250 |
| PshBI | ATTAAT | 1 cut(s) | 63 |
| PsuI | RGATCY | 1 cut(s) | 20 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| SatI | GCNGC | 3 cut(s) | 86, 89, 249 |
| Sau3AI | GATC | 4 cut(s) | 20, 38, 55, 67 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| Sse9I | AATT | 1 cut(s) | 60 |
| SspMI | CTAG | 2 cut(s) | 6, 24 |
| TaaI | ACNGT | 2 cut(s) | 113, 145 |
| TaiI | ACGT | 2 cut(s) | 121, 161 |
| TaqI | TCGA | 2 cut(s) | 41, 140 |
| TasI | AATT | 1 cut(s) | 60 |
| TfiI | GAWTC | 2 cut(s) | 45, 103 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TscAI | CASTG | 2 cut(s) | 150, 244 |
| TseFI | GTSAC | 1 cut(s) | 73 |
| TseI | GCWGC | 3 cut(s) | 85, 88, 248 |
| Tsp45I | GTSAC | 1 cut(s) | 73 |
| TspRI | CASTG | 2 cut(s) | 150, 244 |
| VspI | ATTAAT | 1 cut(s) | 63 |
| XmiI | GTMKAC | 1 cut(s) | 115 |
| XspI | CTAG | 2 cut(s) | 6, 24 |
| ZraI | GACGTC | 1 cut(s) | 119 |