AT1G27190

Leucine-rich repeat protein kinase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012858
Physical Location & Seq
Reverse (-)
9446597 .. 9449046
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27190.1

Sequence Viewer

Length: 1806 bp
ATGAAGAAGATCTTCATCACACTCTTATGGCTTCTCTTCATAAGCTCGTTTCTCTGTTCTTCTTCTTCAGCTGAAGACGACGTTCTCTGTCTCCAAGGTTTGAAAAACTCACTCATCGATCCTTCTTCTAGACTCAGTTCCTGGTCTTTCCCAAACTCTTCAGCTTCTTCGATTTGTAAGCTCACTGGTGTTTCCTGCTGGAACGAGAAAGAGAATCGGATTATTTCTCTTCAGCTTCAATCGATGCAGCTCGCCGGTGAGATTCCTGAGTCTCTTAAGCTTTGTCGTAGTTTACAATCTCTGGATCTCTCTGGAAACGATCTCTCTGGTTCGATTCCTTCTCAAATCTGTTCGTGGCTTCCTTATCTCGTTACGTTAGATCTGTCTGGGAATAAGCTTGGTGGTTCGATTCCGACTCAGATCGTTGAGTGTAAGTTCTTAAACGCTTTGATTCTGAGTGATAATAAGCTTTCTGGTTCGATTCCTTCTCAGTTGAGTCGATTAGATCGCCTTCGACGTCTTTCTCTAGCAGGGAATGATCTCTCCGGTACGATTCCGTCCGAGCTGGCTCGGTTCGGAGGAGACGATTTTAGCGGGAATAACGGACTTTGTGGGAAGCCTTTATCGCGATGTGGAGCGTTGAATGGGAGAAATCTGAGTATTATTATAGTTGCTGGAGTTCTTGGAGCTGTTGGATCTTTGTGCGTTGGTTTAGTTATATTCTGGTGGTTCTTTATTAGAGAAGGTAGTAGGAAGAAGAAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGATTGGTTTGTTGAGGTCACATAAGCTTGTTCAGGTGACTTTGTTTCAGAAACCTATTGTGAAGATTAAATTGGGTGATTTAATGGCTGCTACGAACAATTTTAGTTCAGGGAATATCGATGTTTCGTCGAGGACTGGGGTTTCGTATAAAGCGGATTTACCTGATGGGTCTGCACTTGCGGTGAAGAGGCTTAGTGCTTGTGGGTTTGGTGAGAAACAGTTTAGGTCGGAGATGAATAAGTTAGGAGAGCTTAGACATCCGAATTTGGTGCCGCTTTTAGGGTATTGTGTTGTGGAAGATGAGAGACTGTTGGTGTATAAGCATATGGTTAATGGTACGTTGTTTTCTCAGTTGCACAATGGTGGATTGTGTGATGCTGTTTTGGATTGGCCGACTCGGCGTGCGATTGGTGTGGGAGCTGCTAAAGGGTTAGCTTGGTTGCATCATGGATGCCAACCGCCGTATTTGCATCAGTTTATTAGCTCCAATGTTATACTTCTTGATGATGATTTTGATGCTCGGATAACAGATTACGGATTGGCAAAGCTAGTTGGATCTCGTGATTCGAACGATAGCTCGTTCAATAATGGGGATTTGGGGGAGTTAGGTTATGTAGCGCCTGAGTATTCGAGCACCATGGTTGCGTCTTTGAAAGGAGATGTGTATGGGTTTGGGATTGTGCTTCTTGAATTGGTTACAGGGCAAAAGCCTTTGTCTGTTATTAACGGTGTGGAAGGGTTTAAAGGGAGTTTAGTTGACTGGGTGAGTCAGTATTTGGGTACTGGTAGAAGCAAAGACGCTATTGATAGAAGCATATGTGATAAAGGACACGATGAGGAGATATTGCAGTTCCTGAAAATCGCATGTAGCTGTGTTGTGTCCAGGCCTAAGGAAAGGCCAACGATGATTCAGGTGTATGAATCTTTGAAGAACATGGCAGATAAACACGGTGTTTCGGAGCATTACGATGAATTTCCTCTGGTCTTCAACAAACAAGAAGCTTGA

Protein Analysis

601

Amino Acids

65.42

Weight (kDa)

7.46

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 25 - 67 1.8e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 121 - 181 6.3e-06 Leucine rich repeat
Pkinase PF00069 321 - 574 5e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 325 - 576 1.1e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27190
fragaria_vesca FvH4_4g35360
malus_domestica MD13G1083700.v1.1 MD16G1083200.v1.1
prunus_persica Prupe.1G262800_v2.0.a1
pyrus_communis pycom16g07210
rosa_chinensis RchiOBHm_Chr4g0444971
rosa_laevigata RLG00000005781
rosa_multiflora Rmu_co8441815.1_g000001 Rmu_sc0011561.1_g000008 Rmu_sc0013670.1_g000005
rosa_roxburghii Rroxscaffold_5G00385470
rosa_rugosa Rorug04G0356900
rosa_samantha Rh4AG418500 Rh4BG430200 Rh4CG445000 Rh4DG426200
rosa_wichuraiana Rw4G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 1069
AccII CGCG 1 cut(s) 628
AciI CCGC 5 cut(s) 594, 953, 980, 1073, 1259
AclWI GGATC 4 cut(s) 113, 312, 703, 1363
AcoI YGGCCR 1 cut(s) 1190
AcsI RAATTY 2 cut(s) 1063, 1772
AcuI CTGAAG 4 cut(s) 51, 93, 144, 215
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 3 cut(s) 550, 1138, 1582
AfiI CCNNNNNNNGG 1 cut(s) 1079
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 8 cut(s) 103, 239, 643, 1384, 1453, 1490, 1729, 1789
AjnI CCWGG 2 cut(s) 140, 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AleI CACNNNNGTG 1 cut(s) 1161
Alw21I GWGCWC 1 cut(s) 1436
Alw26I GTCTC 4 cut(s) 95, 276, 576, 1099
AlwI GGATC 4 cut(s) 113, 312, 703, 1363
AlwNI CAGNNNCTG 2 cut(s) 141, 1654
AoxI GGCC 3 cut(s) 1190, 1685, 1697
ApeKI GCWGC 3 cut(s) 247, 887, 1220
ApoI RAATTY 2 cut(s) 1063, 1772
ArsI GACNNNNNNTTYG 2 cut(s) 925, 957
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 1420
AsuHPI GGTGA 6 cut(s) 269, 847, 887, 994, 1022, 1576
AsuII TTCGAA 1 cut(s) 1367
AxyI CCTNAGG 1 cut(s) 1689
BanI GGYRCC 1 cut(s) 1069
BauI CACGAG 1 cut(s) 1359
BbsI GAAGAC 2 cut(s) 81, 1777
Bbv12I GWGCWC 1 cut(s) 1436
BbvI GCAGC 3 cut(s) 259, 874, 1207
BccI CCATC 1 cut(s) 959
BceAI ACGGC 1 cut(s) 1246
BcgI CGANNNNNNTGC 2 cut(s) 1051, 1085
BciT130I CCWGG 2 cut(s) 142, 1684
BcoDI GTCTC 4 cut(s) 95, 276, 576, 1099
BfaI CTAG 3 cut(s) 129, 527, 1349
BfoI RGCGCY 1 cut(s) 1421
BfrI CTTAAG 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 1198
BglII AGATCT 2 cut(s) 9, 379
BisI GCNGC 4 cut(s) 248, 888, 1073, 1221
BlsI GCNGC 4 cut(s) 249, 889, 1074, 1222
Bme1390I CCNGG 2 cut(s) 142, 1684
BmiI GGNNCC 1 cut(s) 1071
BmrFI CCNGG 2 cut(s) 142, 1684
BmrI ACTGGG 2 cut(s) 945, 1570
BmsI GCATC 6 cut(s) 234, 1165, 1241, 1252, 1279, 1306
BmuI ACTGGG 2 cut(s) 945, 1570
BpiI GAAGAC 2 cut(s) 81, 1777
BpmI CTGGAG 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 1367
Bsa29I ATCGAT 3 cut(s) 117, 242, 918
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 2 cut(s) 94, 1437
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 1 cut(s) 1079
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 4 cut(s) 190, 940, 1565, 1588
Bse21I CCTNAGG 1 cut(s) 1689
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 2 cut(s) 142, 1684
BseCI ATCGAT 3 cut(s) 117, 242, 918
BseDI CCNNGG 2 cut(s) 94, 1437
BseGI GGATG 3 cut(s) 793, 1057, 1256
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 1079
BseMII CTCAG 8 cut(s) 148, 258, 431, 446, 503, 647, 1163, 1413
BseNI ACTGG 4 cut(s) 190, 940, 1565, 1588
BseRI GAGGAG 2 cut(s) 594, 1652
BseXI GCAGC 3 cut(s) 259, 874, 1207
BseYI CCCAGC 1 cut(s) 773
BsgI GTGCAG 1 cut(s) 957
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 3 cut(s) 1192, 1687, 1699
BshNI GGYRCC 1 cut(s) 1069
BshVI ATCGAT 3 cut(s) 117, 242, 918
BsiHKAI GWGCWC 1 cut(s) 1436
BsiSI CCGG 2 cut(s) 255, 546
BslI CCNNNNNNNGG 1 cut(s) 1079
BsmAI GTCTC 4 cut(s) 95, 276, 576, 1099
BsmBI CGTCTC 1 cut(s) 576
BsnI GGCC 3 cut(s) 1192, 1687, 1699
Bsp119I TTCGAA 1 cut(s) 1367
Bsp1286I GDGCHC 1 cut(s) 1436
Bsp19I CCATGG 1 cut(s) 1437
Bsp68I TCGCGA 1 cut(s) 628
BspACI CCGC 5 cut(s) 594, 953, 980, 1073, 1259
BspANI GGCC 3 cut(s) 1192, 1687, 1699
BspCNI CTCAG 8 cut(s) 147, 259, 430, 447, 502, 648, 1162, 1414
BspDI ATCGAT 3 cut(s) 117, 242, 918
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 1071
BspPI GGATC 4 cut(s) 113, 312, 703, 1363
BspT104I TTCGAA 1 cut(s) 1367
BspT107I GGYRCC 1 cut(s) 1069
BspTI CTTAAG 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 4 cut(s) 190, 940, 1565, 1588
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 94, 1437
BssNI GRCGYC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 1359
BssT1I CCWWGG 2 cut(s) 94, 1437
Bst2BI CACGAG 1 cut(s) 1359
Bst2UI CCWGG 2 cut(s) 142, 1684
Bst4CI ACNGT 4 cut(s) 1020, 1110, 1529, 1751
Bst6I CTCTTC 4 cut(s) 41, 163, 234, 980
BstACI GRCGYC 1 cut(s) 517
BstAFI CTTAAG 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 1367
BstC8I GCNNGC 3 cut(s) 252, 567, 1203
BstDSI CCRYGG 1 cut(s) 1437
BstF5I GGATG 3 cut(s) 793, 1057, 1256
BstFNI CGCG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 1421
BstHHI GCGC 1 cut(s) 1420
BstMAI GTCTC 4 cut(s) 95, 276, 576, 1099
BstMWI GCNNNNNNNGC 3 cut(s) 625, 1198, 1267
BstNI CCWGG 2 cut(s) 142, 1684
BstNSI RCATGY 1 cut(s) 1668
BstSCI CCNGG 2 cut(s) 140, 1682
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 3 cut(s) 259, 874, 1207
BstV2I GAAGAC 2 cut(s) 81, 1777
BstX2I RGATCY 5 cut(s) 9, 304, 379, 695, 1355
BstYI RGATCY 5 cut(s) 9, 304, 379, 695, 1355
Bsu15I ATCGAT 3 cut(s) 117, 242, 918
Bsu36I CCTNAGG 1 cut(s) 1689
BsuRI GGCC 3 cut(s) 1192, 1687, 1699
BsuTUI ATCGAT 3 cut(s) 117, 242, 918
BtgI CCRYGG 1 cut(s) 1437
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 3 cut(s) 793, 1057, 1256
BtsIMutI CAGTG 1 cut(s) 183
BtuMI TCGCGA 1 cut(s) 628
Cac8I GCNNGC 3 cut(s) 252, 567, 1203
CaiI CAGNNNCTG 2 cut(s) 141, 1654
CfoI GCGC 1 cut(s) 1420
Cfr10I RCCGGY 1 cut(s) 254
ClaI ATCGAT 3 cut(s) 117, 242, 918
CseI GACGC 2 cut(s) 1434, 1607
Csp6I GTAC 3 cut(s) 549, 1137, 1581
CviAII CATG 4 cut(s) 1247, 1438, 1665, 1735
CviQI GTAC 3 cut(s) 549, 1137, 1581
DraI TTTAAA 1 cut(s) 1543
EaeI YGGCCR 1 cut(s) 1190
Eam1104I CTCTTC 4 cut(s) 41, 163, 234, 980
EarI CTCTTC 4 cut(s) 41, 163, 234, 980
Eco130I CCWWGG 2 cut(s) 94, 1437
Eco147I AGGCCT 1 cut(s) 1687
Eco57I CTGAAG 4 cut(s) 51, 93, 144, 215
Eco81I CCTNAGG 1 cut(s) 1689
EcoRII CCWGG 2 cut(s) 140, 1682
EcoT14I CCWWGG 2 cut(s) 94, 1437
ErhI CCWWGG 2 cut(s) 94, 1437
Esp3I CGTCTC 1 cut(s) 576
FaeI CATG 4 cut(s) 1250, 1441, 1668, 1738
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 4 cut(s) 1246, 1437, 1664, 1734
FauI CCCGC 1 cut(s) 587
FauNDI CATATG 2 cut(s) 1125, 1616
Fnu4HI GCNGC 4 cut(s) 248, 888, 1073, 1221
FokI GGATG 3 cut(s) 800, 1044, 1263
Fsp4HI GCNGC 4 cut(s) 248, 888, 1073, 1221
FspBI CTAG 3 cut(s) 129, 527, 1349
GlaI GCGC 1 cut(s) 1419
GluI GCNGC 4 cut(s) 248, 888, 1073, 1221
GsaI CCCAGC 1 cut(s) 777
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 1421
HaeIII GGCC 3 cut(s) 1192, 1687, 1699
HapII CCGG 2 cut(s) 255, 546
HgaI GACGC 2 cut(s) 1434, 1607
HhaI GCGC 1 cut(s) 1420
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 4 cut(s) 1250, 1441, 1668, 1738
Hin6I GCGC 1 cut(s) 1418
HinP1I GCGC 1 cut(s) 1418
HincII GTYRAC 1 cut(s) 1558
HindII GTYRAC 1 cut(s) 1558
HindIII AAGCTT 5 cut(s) 278, 395, 467, 824, 1800
HpaII CCGG 2 cut(s) 255, 546
HphI GGTGA 6 cut(s) 269, 847, 887, 994, 1022, 1576
Hpy166II GTNNAC 2 cut(s) 293, 1558
Hpy188III TCNNGA 9 cut(s) 129, 266, 302, 312, 627, 1301, 1361, 1487, 1654
Hpy8I GTNNAC 2 cut(s) 293, 1558
Hpy99I CGWCG 3 cut(s) 83, 519, 931
HpyAV CCTTC 6 cut(s) 132, 348, 495, 521, 737, 1529
HpyCH4III ACNGT 4 cut(s) 1020, 1110, 1529, 1751
HpyCH4IV ACGT 4 cut(s) 81, 374, 517, 1139
HpyCH4V TGCA 6 cut(s) 247, 974, 1156, 1243, 1270, 1648
HpyF10VI GCNNNNNNNGC 3 cut(s) 625, 1198, 1267
HpySE526I ACGT 4 cut(s) 81, 374, 517, 1139
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 4 cut(s) 1250, 1441, 1668, 1738
HspAI GCGC 1 cut(s) 1418
LmnI GCTCC 5 cut(s) 635, 686, 1217, 1289, 1759
Lsp1109I GCAGC 3 cut(s) 259, 874, 1207
LweI GCATC 6 cut(s) 234, 1165, 1241, 1252, 1279, 1306
MaeI CTAG 3 cut(s) 129, 527, 1349
MaeII ACGT 4 cut(s) 81, 374, 517, 1139
MaeIII GTNAC 4 cut(s) 370, 816, 835, 1495
MflI RGATCY 5 cut(s) 9, 304, 379, 695, 1355
MhlI GDGCHC 1 cut(s) 1436
MluCI AATT 5 cut(s) 869, 898, 1063, 1490, 1772
MlyI GAGTC 6 cut(s) 126, 278, 409, 505, 1189, 1576
MmeI TCCRAC 4 cut(s) 437, 673, 1008, 1333
MnlI CCTC 6 cut(s) 572, 807, 924, 981, 1630, 1788
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 7 cut(s) 276, 440, 867, 881, 1131, 1524, 1542
MslI CAYNNNNRTG 3 cut(s) 25, 1161, 1767
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 2 cut(s) 255, 546
MspR9I CCNGG 2 cut(s) 142, 1684
MvaI CCWGG 2 cut(s) 142, 1684
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 3 cut(s) 625, 1198, 1267
NcoI CCATGG 1 cut(s) 1437
NdeI CATATG 2 cut(s) 1125, 1616
NlaIII CATG 4 cut(s) 1250, 1441, 1668, 1738
NlaIV GGNNCC 1 cut(s) 1071
NmeAIII GCCGAG 1 cut(s) 1177
NmuCI GTSAC 2 cut(s) 816, 835
NruI TCGCGA 1 cut(s) 628
NspI RCATGY 1 cut(s) 1668
NspV TTCGAA 1 cut(s) 1367
OliI CACNNNNGTG 1 cut(s) 1161
PceI AGGCCT 1 cut(s) 1687
PcsI WCGNNNNNNNCGW 2 cut(s) 514, 582
PdmI GAANNNNTTC 1 cut(s) 11
PkrI GCNGC 4 cut(s) 249, 889, 1074, 1222
PleI GAGTC 6 cut(s) 126, 277, 409, 504, 1189, 1575
PpsI GAGTC 6 cut(s) 126, 277, 409, 504, 1189, 1575
Psp6I CCWGG 2 cut(s) 140, 1682
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 2 cut(s) 140, 1682
PspN4I GGNNCC 1 cut(s) 1071
PstNI CAGNNNCTG 2 cut(s) 141, 1654
PsuI RGATCY 5 cut(s) 9, 304, 379, 695, 1355
PvuII CAGCTG 1 cut(s) 71
RruI TCGCGA 1 cut(s) 628
RsaI GTAC 3 cut(s) 550, 1138, 1582
RsaNI GTAC 3 cut(s) 549, 1137, 1581
RseI CAYNNNNRTG 3 cut(s) 25, 1161, 1767
SaqAI TTAA 7 cut(s) 276, 440, 867, 881, 1131, 1524, 1542
SatI GCNGC 4 cut(s) 248, 888, 1073, 1221
SchI GAGTC 6 cut(s) 126, 278, 409, 505, 1189, 1576
ScrFI CCNGG 2 cut(s) 142, 1684
SduI GDGCHC 1 cut(s) 1436
SfaNI GCATC 6 cut(s) 234, 1165, 1241, 1252, 1279, 1306
SfuI TTCGAA 1 cut(s) 1367
SgrAI CRCCGGYG 1 cut(s) 254
SmiMI CAYNNNNRTG 3 cut(s) 25, 1161, 1767
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 5 cut(s) 869, 898, 1063, 1490, 1772
SseBI AGGCCT 1 cut(s) 1687
SsiI CCGC 5 cut(s) 594, 953, 980, 1073, 1259
SspMI CTAG 3 cut(s) 129, 527, 1349
StuI AGGCCT 1 cut(s) 1687
StyD4I CCNGG 2 cut(s) 140, 1682
StyI CCWWGG 2 cut(s) 94, 1437
TaaI ACNGT 4 cut(s) 1020, 1110, 1529, 1751
TaiI ACGT 4 cut(s) 84, 377, 520, 1142
TasI AATT 5 cut(s) 869, 898, 1063, 1490, 1772
TauI GCSGC 1 cut(s) 1075
Tru1I TTAA 7 cut(s) 276, 440, 867, 881, 1131, 1524, 1542
Tru9I TTAA 7 cut(s) 276, 440, 867, 881, 1131, 1524, 1542
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 816, 835
TseI GCWGC 3 cut(s) 247, 887, 1220
Tsp45I GTSAC 2 cut(s) 816, 835
TspDTI ATGAA 6 cut(s) 4, 17, 28, 1049, 1734, 1785
TspGWI ACGGA 3 cut(s) 546, 618, 1350
TspRI CASTG 1 cut(s) 190
Vha464I CTTAAG 1 cut(s) 275
XapI RAATTY 2 cut(s) 1063, 1772
XbaI TCTAGA 1 cut(s) 128
XceI RCATGY 1 cut(s) 1668
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 3 cut(s) 129, 527, 1349
ZraI GACGTC 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.