Rmu_co8441815.1_g000001
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8441815.1
OG0012858
Physical Location & Seq
Reverse (-)
384 .. 1550
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8441815.1_g000001.1.cds

Sequence Viewer

Length: 1167 bp
ctgtgtggaaagcctcttgggtctaaatgcggtggtctgagcagcaaaagcctcggtattataatcgccgccggggctattggtgcggcggggtcgctgattttggggcttgggatttggtggtggttctttgttaggggaagtaagaaaaagcagggctttggtggtgttggtgagaaaggtgtgagtggctgggttgggttgttgaagtctcacaagcttgttcaagtgtctctatttcagaaaccgattgtgaaagtccggttagctgatttactggtggccaccagcaattttgattcccaaaacattgtcatttccggtagaacaggggtttcttacaaggcggtgttgcctgatgggtctgcattggcaatccggcggcttactgggtgtaaactcggagagaagcagtttaggttggagatgaataggttggggcagctcaggcatcccaatttggtgcctttattggggttctgtgttgtggaggaagagaagcttttggtgtataagcacatgtataatggcacactgtactcccagttgcatggtagtggcaatgtgagtagccagtatggttttttggattggttgacacggttgaggatcggtgtgggagcagccagaggacttgcttggctgcaccatgcttgccagccgccgcagatgcaccagaatattagctcgaatgtgattcttcttgattatgattttgaggctcggataacggattttggattggcgaggctggtgggttctcgtgattcaaatgatagctcgtttgtgaatggggatctgggagagattggttatgttgctcccgagtactcaagcacaatggtggcatcgttaaaaggggatgtctacgggttcggggtagttcttttggaattgattactggacagaaacctttagaaatcagtaatgtagtggagggtttcaaggggaatttggtggattgggtctctcacttatcaaacactggtcgaagcgttgatgccatagacaatgtattagcagggaaaggtcatgatgatgaaattttgcagttcatgagggtggcttgcacttgcgtggttgctaggccaaaagataggccttctatgcatcaggtttacgagtcattgaagagcttggccgataaacatggtttctctgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

388

Amino Acids

42.04

Weight (kDa)

9.05

Isoelectric Point (pI)

28.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27190
fragaria_vesca FvH4_4g35360
malus_domestica MD13G1083700.v1.1 MD16G1083200.v1.1
prunus_persica Prupe.1G262800_v2.0.a1
pyrus_communis pycom16g07210
rosa_chinensis RchiOBHm_Chr4g0444971
rosa_laevigata RLG00000005781
rosa_multiflora Rmu_co8441815.1_g000001 Rmu_sc0011561.1_g000008 Rmu_sc0013670.1_g000005
rosa_roxburghii Rroxscaffold_5G00385470
rosa_rugosa Rorug04G0356900
rosa_samantha Rh4AG418500 Rh4BG430200 Rh4CG445000 Rh4DG426200
rosa_wichuraiana Rw4G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 867
AciI CCGC 8 cut(s) 30, 69, 86, 89, 347, 382, 662, 665
AclWI GGATC 2 cut(s) 617, 804
AcoI YGGCCR 2 cut(s) 282, 1140
AcsI RAATTY 2 cut(s) 952, 1044
AfaI GTAC 2 cut(s) 539, 830
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 5 cut(s) 208, 227, 771, 946, 1132
AleI CACNNNNGTG 2 cut(s) 842, 1076
AluBI AGCT 7 cut(s) 220, 269, 445, 502, 687, 780, 1137
AluI AGCT 7 cut(s) 220, 269, 445, 502, 687, 780, 1137
Alw26I GTCTC 3 cut(s) 216, 237, 973
AlwI GGATC 2 cut(s) 617, 804
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 4 cut(s) 282, 1088, 1100, 1140
ApeKI GCWGC 4 cut(s) 42, 442, 623, 643
ApoI RAATTY 2 cut(s) 952, 1044
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 824
BalI TGGCCA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 463
BauI CACGAG 1 cut(s) 762
BbvI GCAGC 4 cut(s) 54, 454, 630, 635
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 3 cut(s) 216, 237, 973
BfaI CTAG 1 cut(s) 1086
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 9 cut(s) 43, 69, 87, 383, 443, 624, 644, 662, 665
BlsI GCNGC 9 cut(s) 44, 70, 88, 384, 444, 625, 645, 663, 666
BmcAI AGTACT 1 cut(s) 830
Bme1390I CCNGG 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 824
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 1 cut(s) 73
BmrI ACTGGG 2 cut(s) 399, 538
BmsI GCATC 5 cut(s) 460, 660, 857, 991, 1120
BmuI ACTGGG 2 cut(s) 399, 538
Bpu10I CCTNAGC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 2 cut(s) 52, 72
BsaWI WCCGGW 2 cut(s) 261, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 6 cut(s) 282, 394, 544, 574, 907, 991
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 2 cut(s) 52, 72
BseGI GGATG 2 cut(s) 451, 868
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 2 cut(s) 29, 460
BseNI ACTGG 6 cut(s) 282, 394, 544, 574, 907, 991
BseXI GCAGC 4 cut(s) 54, 454, 630, 635
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 4 cut(s) 284, 1090, 1102, 1142
BshNI GGYRCC 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 4 cut(s) 72, 262, 321, 379
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 3 cut(s) 216, 237, 973
BsnI GGCC 4 cut(s) 284, 1090, 1102, 1142
Bso31I GGTCTC 1 cut(s) 973
BsoBI CYCGRG 1 cut(s) 824
Bsp143I GATC 2 cut(s) 609, 796
BspACI CCGC 8 cut(s) 30, 69, 86, 89, 347, 382, 662, 665
BspANI GGCC 4 cut(s) 284, 1090, 1102, 1142
BspCNI CTCAG 2 cut(s) 30, 459
BspHI TCATGA 2 cut(s) 1033, 1056
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 2 cut(s) 617, 804
BspQI GCTCTTC 1 cut(s) 1127
BspT107I GGYRCC 1 cut(s) 463
BspTNI GGTCTC 1 cut(s) 973
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 6 cut(s) 282, 394, 544, 574, 907, 991
BssECI CCNNGG 2 cut(s) 52, 72
BssMI GATC 2 cut(s) 609, 796
BssSI CACGAG 1 cut(s) 762
Bst2BI CACGAG 1 cut(s) 762
Bst4CI ACNGT 2 cut(s) 537, 603
Bst6I CTCTTC 2 cut(s) 489, 1127
BstC8I GCNNGC 3 cut(s) 655, 659, 1069
BstDEI CTNAG 2 cut(s) 38, 446
BstF5I GGATG 2 cut(s) 451, 868
BstKTI GATC 2 cut(s) 612, 799
BstMAI GTCTC 3 cut(s) 216, 237, 973
BstMBI GATC 2 cut(s) 609, 796
BstMWI GCNNNNNNNGC 6 cut(s) 48, 74, 83, 448, 670, 1108
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 54, 454, 630, 635
BstX2I RGATCY 1 cut(s) 796
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 1 cut(s) 796
BsuRI GGCC 4 cut(s) 284, 1090, 1102, 1142
BtsCI GGATG 2 cut(s) 451, 868
BtsIMutI CAGTG 2 cut(s) 533, 984
Cac8I GCNNGC 3 cut(s) 655, 659, 1069
CciI TCATGA 2 cut(s) 1033, 1056
Csp6I GTAC 2 cut(s) 538, 829
CviAII CATG 6 cut(s) 520, 551, 650, 1034, 1057, 1151
CviQI GTAC 2 cut(s) 538, 829
DdeI CTNAG 2 cut(s) 38, 446
DpnI GATC 2 cut(s) 611, 798
DpnII GATC 2 cut(s) 609, 796
EaeI YGGCCR 2 cut(s) 282, 1140
Eam1104I CTCTTC 2 cut(s) 489, 1127
EarI CTCTTC 2 cut(s) 489, 1127
Eco147I AGGCCT 1 cut(s) 1102
Eco31I GGTCTC 1 cut(s) 973
Eco88I CYCGRG 1 cut(s) 824
EcoT22I ATGCAT 1 cut(s) 1113
FaeI CATG 6 cut(s) 523, 554, 653, 1037, 1060, 1154
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 486, 518
FatI CATG 6 cut(s) 519, 550, 649, 1033, 1056, 1150
FauI CCCGC 1 cut(s) 82
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 9 cut(s) 43, 69, 87, 383, 443, 624, 644, 662, 665
FokI GGATG 2 cut(s) 438, 875
Fsp4HI GCNGC 9 cut(s) 43, 69, 87, 383, 443, 624, 644, 662, 665
FspBI CTAG 1 cut(s) 1086
GluI GCNGC 9 cut(s) 43, 69, 87, 383, 443, 624, 644, 662, 665
GsaI CCCAGC 1 cut(s) 196
HaeIII GGCC 4 cut(s) 284, 1090, 1102, 1142
HapII CCGG 4 cut(s) 72, 262, 321, 379
Hin1II CATG 6 cut(s) 523, 554, 653, 1037, 1060, 1154
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 2 cut(s) 218, 500
HinfI GANTC 4 cut(s) 299, 697, 767, 1124
HpaII CCGG 4 cut(s) 72, 262, 321, 379
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 4 cut(s) 398, 597, 868, 1120
Hpy188I TCNGA 5 cut(s) 39, 243, 404, 726, 1162
Hpy188III TCNNGA 5 cut(s) 704, 764, 824, 1034, 1057
Hpy8I GTNNAC 4 cut(s) 398, 597, 868, 1120
HpyAV CCTTC 1 cut(s) 1113
HpyCH4III ACNGT 2 cut(s) 537, 603
HpyCH4V TGCA 7 cut(s) 368, 550, 646, 673, 1051, 1071, 1111
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 74, 83, 448, 670, 1108
HpyF3I CTNAG 2 cut(s) 38, 446
Hsp92II CATG 6 cut(s) 523, 554, 653, 1037, 1060, 1154
Kzo9I GATC 2 cut(s) 609, 796
LguI GCTCTTC 1 cut(s) 1127
LmnI GCTCC 2 cut(s) 620, 826
Lsp1109I GCAGC 4 cut(s) 54, 454, 630, 635
LweI GCATC 5 cut(s) 460, 660, 857, 991, 1120
MaeI CTAG 1 cut(s) 1086
MalI GATC 2 cut(s) 611, 798
MboI GATC 2 cut(s) 609, 796
MboII GAAGA 3 cut(s) 506, 692, 1144
MflI RGATCY 1 cut(s) 796
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 5 cut(s) 292, 457, 893, 952, 1044
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 1 cut(s) 1133
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 9 cut(s) 24, 62, 484, 600, 623, 712, 741, 931, 1053
Mox20I TGGCCA 1 cut(s) 284
Mph1103I ATGCAT 1 cut(s) 1113
MscI TGGCCA 1 cut(s) 284
MseI TTAA 1 cut(s) 854
MslI CAYNNNNRTG 5 cut(s) 555, 842, 1038, 1061, 1076
Msp20I TGGCCA 1 cut(s) 284
MspI CCGG 4 cut(s) 72, 262, 321, 379
MspR9I CCNGG 1 cut(s) 73
MwoI GCNNNNNNNGC 6 cut(s) 48, 74, 83, 448, 670, 1108
NciI CCSGG 1 cut(s) 73
NdeII GATC 2 cut(s) 609, 796
NlaIII CATG 6 cut(s) 523, 554, 653, 1037, 1060, 1154
NlaIV GGNNCC 1 cut(s) 465
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 1 cut(s) 523
OliI CACNNNNGTG 2 cut(s) 842, 1076
PagI TCATGA 2 cut(s) 1033, 1056
PceI AGGCCT 1 cut(s) 1102
PciI ACATGT 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 1127
PfeI GAWTC 3 cut(s) 299, 697, 767
PkrI GCNGC 9 cut(s) 44, 70, 88, 384, 444, 625, 645, 663, 666
PleI GAGTC 1 cut(s) 1132
PpsI GAGTC 1 cut(s) 1132
PscI ACATGT 1 cut(s) 519
PsiI TTATAA 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 465
PsuI RGATCY 1 cut(s) 796
RsaI GTAC 2 cut(s) 539, 830
RsaNI GTAC 2 cut(s) 538, 829
RseI CAYNNNNRTG 5 cut(s) 555, 842, 1038, 1061, 1076
SapI GCTCTTC 1 cut(s) 1127
SaqAI TTAA 1 cut(s) 854
SatI GCNGC 9 cut(s) 43, 69, 87, 383, 443, 624, 644, 662, 665
Sau3AI GATC 2 cut(s) 609, 796
ScaI AGTACT 1 cut(s) 830
SchI GAGTC 1 cut(s) 1133
ScrFI CCNGG 1 cut(s) 73
SfaNI GCATC 5 cut(s) 460, 660, 857, 991, 1120
SmiMI CAYNNNNRTG 5 cut(s) 555, 842, 1038, 1061, 1076
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 5 cut(s) 292, 457, 893, 952, 1044
SseBI AGGCCT 1 cut(s) 1102
SsiI CCGC 8 cut(s) 30, 69, 86, 89, 347, 382, 662, 665
SspI AATATT 1 cut(s) 682
SspMI CTAG 1 cut(s) 1086
StuI AGGCCT 1 cut(s) 1102
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 537, 603
TaqI TCGA 2 cut(s) 689, 991
TasI AATT 5 cut(s) 292, 457, 893, 952, 1044
TatI WGTACW 2 cut(s) 537, 828
TauI GCSGC 5 cut(s) 71, 89, 385, 664, 667
TfiI GAWTC 3 cut(s) 299, 697, 767
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 2 cut(s) 540, 991
TseI GCWGC 4 cut(s) 42, 442, 623, 643
TspDTI ATGAA 3 cut(s) 443, 1045, 1056
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 540, 991
XapI RAATTY 2 cut(s) 952, 1044
XceI RCATGY 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 1 cut(s) 1086
ZrmI AGTACT 1 cut(s) 830
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.