Rorug04G0356900
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012858
Physical Location & Seq
Reverse (-)
52904036 .. 52906716
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0356900.1

Sequence Viewer

Length: 1221 bp
ATGGGGCAAAGAAGGAGAAATAAAAAGCAGAAGAAGCCTATAGATATTGATTGGGCAGGTCTGCCTGACAATATTCTGGAGATAATCTTTGAGCGACTGAATTTGATGGATTGCATGTCTGTTAGTGAGGTTTGCAAATCTTGGAGACATGTTGTTGCACAAGAACTTTCTGGTTGGCAAGGGCATGGGTTTCCATGGCTCTTGATGTCTGGTGAGAAAGACAAAAGGGTAAGGACTTGTGTTAGCATACTACAGGAGCAAGAGTGGGAGATGTTGCTTCCGGAGGCTTATGGTAGATACTGCTGGGGGTCATACCATGACTGGTTTATTCTAGTAAAAGATCTTGGCTCTTTCAGGCTTGATATTAGCTTGTTTAACCCATTCACTCGGAAACAAATTGATCTTCCCGGAGCATGGAACTTGTATCACAAGATGGTTCTCTCAAGGCTTCCCTCTCTTGAAAACTTTATCTGCATGCTGGTTCATAGTCACTCCCAGAAGCTTGCCTTTTGGGTCCCAGGAGCTCAATCATGGCTTGAGCATAAGCTAGATGGTGAACCATTTGTGGATGCTGTCTTCTCCAATGGAAGTTTCTATCTCATTGGCAATGATTGTAACATTTGGGAAATTAAGGGTGCTGATATTTTTGCTGCCATTAATAGAGTCAATGCATCTGCCACTGATGCTTTTGATGTCGAAAGGCATTTCCATGAAGTAACTATGTCAGATGAGCATGAAAATAACGGTGTGCTGAAGTATCTTGTTGAATCTTGTGGGGAGCTTCTACTTGTTTGTAGGTTCTATAGTACTAACCCAGGTGCTGTGCTGGTAACAAATTATTTTAAGGTATATTCACTGGATTTTAGCCAAATGTCCTGGAAGAGGGTAGAGAGTTTGGGAGATCGAATACTATTTCTGGGCAAGTGTTGTTCGAGATCTGTCTCTTCCAGTGGACTTGGTCTTAACATGACTGATTGTATCTATTTCTCTAATGATCATGCTGTTCCGTGGTGGAACGAATGGGATTCTGATCATCTTGATGGCATTTCAACTCGTCTTGGTCTGGACAATAGTGGGAGAAAGGATTGGGGCTTTTTCAGCCTCAGCAACAAGAATCATGAAACTTTGTCTATTCGGTTCCGTGGCAATCGAGACAGATGGGGACCTGTTTGGTTTACTGCGCCACAGTGGTGGTGTTGTAAGAATTTGGTTCTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

406

Amino Acids

47.02

Weight (kDa)

6.23

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 59 2.2e-07 F-box-like
F-box PF00646 19 - 53 2.4e-08 F-box domain
Beta-prop_KIB1-4 PF03478 91 - 342 2.8e-47 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27190
fragaria_vesca FvH4_4g35360
malus_domestica MD13G1083700.v1.1 MD16G1083200.v1.1
prunus_persica Prupe.1G262800_v2.0.a1
pyrus_communis pycom16g07210
rosa_chinensis RchiOBHm_Chr4g0444971
rosa_laevigata RLG00000005781
rosa_multiflora Rmu_co8441815.1_g000001 Rmu_sc0011561.1_g000008 Rmu_sc0013670.1_g000005
rosa_roxburghii Rroxscaffold_5G00385470
rosa_rugosa Rorug04G0356900
rosa_samantha Rh4AG418500 Rh4BG430200 Rh4CG445000 Rh4DG426200
rosa_wichuraiana Rw4G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AccIII TCCGGA 1 cut(s) 280
AcsI RAATTY 2 cut(s) 100, 1204
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 1 cut(s) 808
AfiI CCNNNNNNNGG 2 cut(s) 414, 882
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 3 cut(s) 461, 767, 1050
AjnI CCWGG 3 cut(s) 517, 814, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AleI CACNNNNGTG 1 cut(s) 1189
AluBI AGCT 5 cut(s) 369, 502, 524, 547, 781
AluI AGCT 5 cut(s) 369, 502, 524, 547, 781
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 3 cut(s) 139, 946, 1146
AlwNI CAGNNNCTG 1 cut(s) 821
Aor13HI TCCGGA 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 2 cut(s) 100, 1204
AseI ATTAAT 1 cut(s) 657
AspLEI GCGC 1 cut(s) 1183
AspS9I GGNCC 2 cut(s) 514, 1163
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 224, 566
AvaII GGWCC 2 cut(s) 514, 1163
BanII GRGCYC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 568
Bbv12I GWGCWC 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 1103
BbvI GCAGC 1 cut(s) 637
BccI CCATC 5 cut(s) 100, 427, 545, 1034, 1152
BciT130I CCWGG 3 cut(s) 519, 816, 877
BclI TGATCA 2 cut(s) 994, 1030
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 3 cut(s) 139, 946, 1146
BfaI CTAG 3 cut(s) 332, 548, 1219
BfmI CTRYAG 3 cut(s) 39, 251, 802
BfuAI ACCTGC 1 cut(s) 47
BglII AGATCT 2 cut(s) 340, 935
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 4 cut(s) 408, 519, 816, 877
Bme18I GGWCC 2 cut(s) 514, 1163
BmgT120I GGNCC 2 cut(s) 514, 1163
BmiI GGNNCC 4 cut(s) 515, 516, 1139, 1164
BmrFI CCNGG 4 cut(s) 408, 519, 816, 877
BmsI GCATC 3 cut(s) 559, 673, 680
BpiI GAAGAC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 1103
BpuEI CTTGAG 2 cut(s) 427, 557
BpuMI CCSGG 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 1029
BsaJI CCNNGG 5 cut(s) 194, 517, 814, 1007, 1141
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 882
Bse1I ACTGG 3 cut(s) 326, 861, 948
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 1029
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 3 cut(s) 519, 816, 877
BseDI CCNNGG 5 cut(s) 194, 517, 814, 1007, 1141
BseGI GGATG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 2 cut(s) 414, 882
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 1117
BseNI ACTGG 3 cut(s) 326, 861, 948
BseXI GCAGC 1 cut(s) 637
BseYI CCCAGC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 281, 408
BslFI GGGAC 2 cut(s) 500, 1176
BslI CCNNNNNNNGG 2 cut(s) 414, 882
BsmAI GTCTC 3 cut(s) 139, 946, 1146
BsmFI GGGAC 2 cut(s) 500, 1176
Bsp1286I GDGCHC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
Bsp19I CCATGG 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 1116
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 4 cut(s) 515, 516, 1139, 1164
BspMI ACCTGC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 3 cut(s) 326, 861, 948
BssECI CCNNGG 5 cut(s) 194, 517, 814, 1007, 1141
BssMI GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 3 cut(s) 519, 816, 877
Bst4CI ACNGT 2 cut(s) 746, 1188
Bst6I CTCTTC 2 cut(s) 875, 949
BstC8I GCNNGC 2 cut(s) 476, 504
BstDEI CTNAG 1 cut(s) 1103
BstDSI CCRYGG 3 cut(s) 194, 1007, 1141
BstENI CCTNNNNNAGG 1 cut(s) 880
BstF5I GGATG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 1183
BstKTI GATC 6 cut(s) 343, 403, 904, 938, 997, 1033
BstMAI GTCTC 3 cut(s) 139, 946, 1146
BstMBI GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 34, 683, 1098
BstNI CCWGG 3 cut(s) 519, 816, 877
BstNSI RCATGY 3 cut(s) 118, 152, 478
BstSCI CCNGG 4 cut(s) 406, 517, 814, 875
BstSFI CTRYAG 3 cut(s) 39, 251, 802
BstV1I GCAGC 1 cut(s) 637
BstV2I GAAGAC 1 cut(s) 568
BstX2I RGATCY 2 cut(s) 340, 935
BstXI CCANNNNNNTGG 1 cut(s) 1191
BstYI RGATCY 2 cut(s) 340, 935
BtgI CCRYGG 3 cut(s) 194, 1007, 1141
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 4 cut(s) 678, 854, 955, 1193
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 476, 504
CaiI CAGNNNCTG 1 cut(s) 821
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 1 cut(s) 1183
Cfr13I GGNCC 2 cut(s) 514, 1163
Csp6I GTAC 1 cut(s) 807
CviQI GTAC 1 cut(s) 807
DdeI CTNAG 1 cut(s) 1103
DpnI GATC 6 cut(s) 342, 402, 903, 937, 996, 1032
DpnII GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
Eam1104I CTCTTC 2 cut(s) 875, 949
EarI CTCTTC 2 cut(s) 875, 949
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 514, 1163
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 773
EcoICRI GAGCTC 1 cut(s) 524
EcoNI CCTNNNNNAGG 1 cut(s) 880
EcoO109I RGGNCCY 2 cut(s) 514, 1163
EcoRII CCWGG 3 cut(s) 517, 814, 875
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 194
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 2 cut(s) 500, 1176
FbaI TGATCA 2 cut(s) 994, 1030
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 3 cut(s) 332, 548, 1219
GlaI GCGC 1 cut(s) 1182
GluI GCNGC 1 cut(s) 651
GsaI CCCAGC 1 cut(s) 307
GsuI CTGGAG 1 cut(s) 98
HapII CCGG 2 cut(s) 281, 408
HhaI GCGC 1 cut(s) 1183
Hin6I GCGC 1 cut(s) 1181
HinP1I GCGC 1 cut(s) 1181
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 4 cut(s) 663, 767, 1025, 1114
HpaII CCGG 2 cut(s) 281, 408
HphI GGTGA 2 cut(s) 224, 566
Hpy166II GTNNAC 3 cut(s) 557, 953, 1176
Hpy188I TCNGA 3 cut(s) 390, 727, 1030
Hpy188III TCNNGA 9 cut(s) 77, 202, 281, 458, 933, 1037, 1064, 1118, 1151
Hpy8I GTNNAC 3 cut(s) 557, 953, 1176
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 2 cut(s) 746, 1188
HpyCH4V TGCA 5 cut(s) 114, 135, 158, 474, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 683, 1098
HpyF3I CTNAG 1 cut(s) 1103
HspAI GCGC 1 cut(s) 1181
KflI GGGWCCC 1 cut(s) 514
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 2 cut(s) 994, 1030
Kzo9I GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
LmnI GCTCC 4 cut(s) 256, 410, 521, 778
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 3 cut(s) 559, 673, 680
MaeI CTAG 3 cut(s) 332, 548, 1219
MaeIII GTNAC 4 cut(s) 488, 614, 715, 829
MalI GATC 6 cut(s) 342, 402, 903, 937, 996, 1032
MboI GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
MboII GAAGA 5 cut(s) 43, 395, 568, 892, 936
MflI RGATCY 2 cut(s) 340, 935
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 5 cut(s) 100, 396, 627, 835, 1204
MlyI GAGTC 1 cut(s) 672
MnlI CCTC 5 cut(s) 121, 277, 463, 876, 1112
Mph1103I ATGCAT 1 cut(s) 673
MroI TCCGGA 1 cut(s) 280
MseI TTAA 5 cut(s) 375, 630, 657, 843, 963
MslI CAYNNNNRTG 3 cut(s) 708, 1038, 1189
MspI CCGG 2 cut(s) 281, 408
MspR9I CCNGG 4 cut(s) 408, 519, 816, 877
MvaI CCWGG 3 cut(s) 519, 816, 877
MwoI GCNNNNNNNGC 3 cut(s) 34, 683, 1098
NciI CCSGG 1 cut(s) 408
NcoI CCATGG 1 cut(s) 194
NdeII GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
NlaIV GGNNCC 4 cut(s) 515, 516, 1139, 1164
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 673
NspI RCATGY 3 cut(s) 118, 152, 478
OliI CACNNNNGTG 1 cut(s) 1189
PaeI GCATGC 1 cut(s) 478
PagI TCATGA 1 cut(s) 1117
PciI ACATGT 1 cut(s) 148
PfeI GAWTC 3 cut(s) 767, 1025, 1114
PflFI GACNNNGTC 1 cut(s) 957
PfoI TCCNGGA 2 cut(s) 406, 875
PkrI GCNGC 1 cut(s) 652
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
PpuMI RGGWCCY 2 cut(s) 514, 1163
PscI ACATGT 1 cut(s) 148
PshBI ATTAAT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 526
Psp5II RGGWCCY 2 cut(s) 514, 1163
Psp6I CCWGG 3 cut(s) 517, 814, 875
PspFI CCCAGC 1 cut(s) 303
PspGI CCWGG 3 cut(s) 517, 814, 875
PspN4I GGNNCC 4 cut(s) 515, 516, 1139, 1164
PspPI GGNCC 2 cut(s) 514, 1163
PspPPI RGGWCCY 2 cut(s) 514, 1163
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 2 cut(s) 340, 935
PsyI GACNNNGTC 1 cut(s) 957
RsaI GTAC 1 cut(s) 808
RsaNI GTAC 1 cut(s) 807
RseI CAYNNNNRTG 3 cut(s) 708, 1038, 1189
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 5 cut(s) 375, 630, 657, 843, 963
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 6 cut(s) 340, 400, 901, 935, 994, 1030
Sau96I GGNCC 2 cut(s) 514, 1163
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 4 cut(s) 408, 519, 816, 877
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 3 cut(s) 559, 673, 680
SfcI CTRYAG 3 cut(s) 39, 251, 802
SinI GGWCC 2 cut(s) 514, 1163
SmiMI CAYNNNNRTG 3 cut(s) 708, 1038, 1189
SmlI CTYRAG 2 cut(s) 442, 536
SmoI CTYRAG 2 cut(s) 442, 536
SphI GCATGC 1 cut(s) 478
Sse9I AATT 5 cut(s) 100, 396, 627, 835, 1204
SspI AATATT 1 cut(s) 73
SspMI CTAG 3 cut(s) 332, 548, 1219
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 4 cut(s) 406, 517, 814, 875
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 746, 1188
TaqI TCGA 4 cut(s) 696, 904, 932, 1150
TasI AATT 5 cut(s) 100, 396, 627, 835, 1204
TatI WGTACW 1 cut(s) 806
TfiI GAWTC 3 cut(s) 767, 1025, 1114
Tru1I TTAA 5 cut(s) 375, 630, 657, 843, 963
Tru9I TTAA 5 cut(s) 375, 630, 657, 843, 963
TscAI CASTG 4 cut(s) 685, 861, 955, 1193
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 4 cut(s) 473, 726, 750, 1134
TspGWI ACGGA 2 cut(s) 996, 1130
TspRI CASTG 4 cut(s) 685, 861, 955, 1193
Tth111I GACNNNGTC 1 cut(s) 957
VpaK11BI GGWCC 2 cut(s) 514, 1163
VspI ATTAAT 1 cut(s) 657
XagI CCTNNNNNAGG 1 cut(s) 880
XapI RAATTY 2 cut(s) 100, 1204
XceI RCATGY 3 cut(s) 118, 152, 478
XspI CTAG 3 cut(s) 332, 548, 1219
ZrmI AGTACT 1 cut(s) 808
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.