AT1G32280
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
11646189 .. 11647001
813 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32280.1

Sequence Viewer

Length: 339 bp
ATGGAGAAGCAAATATTTTGTCAATTCTTAGTCGTAATGATGTTATTGTCATCATCTCAAATTCAGGGAGATTTGAGGAAAGGATGTTATGATTTAGGGATCACAGTTTTGATGGGTTGTCCAGATTCTATTGACAAGAAGCTTCCAGCTCCTCCGACACCATCCGAAGGTTGTTGCACTCTTGTCCGAACCATCGGAATGAAATGTGTATGTGAAATCGTCAACAAGAAAATCGAAGACACCATTGATATGCAAAAGCTCGTCAATGTCGCCGCAGCTTGTGGTCGTCCCCTTGCTCCTGGTTCACAATGCGGAAGTTACCGAGTTCCTGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.03

Weight (kDa)

8.08

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 104 5.8e-13 Probable lipid transfer
Tryp_alpha_amyl PF00234 37 - 104 9.7e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32280 AT2G13295 AT5G56480
prunus_persica Prupe.4G257900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 273, 312
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 167
AjnI CCWGG 2 cut(s) 298, 328
AluBI AGCT 4 cut(s) 142, 149, 259, 278
AluI AGCT 4 cut(s) 142, 149, 259, 278
AlwI GGATC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 60
ArsI GACNNNNNNTTYG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 287
BccI CCATC 3 cut(s) 106, 169, 200
BciT130I CCWGG 2 cut(s) 300, 330
BisI GCNGC 2 cut(s) 273, 276
BlsI GCNGC 2 cut(s) 274, 277
Bme1390I CCNGG 2 cut(s) 300, 330
BmrFI CCNGG 2 cut(s) 300, 330
BpiI GAAGAC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 2 cut(s) 300, 330
BseGI GGATG 2 cut(s) 89, 161
BseLI CCNNNNNNNGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 287
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 2 cut(s) 273, 312
BspPI GGATC 1 cut(s) 107
BssMI GATC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 300, 330
Bst4CI ACNGT 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 89, 161
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 2 cut(s) 300, 330
BstSCI CCNGG 2 cut(s) 298, 328
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 243
BtsCI GGATG 2 cut(s) 89, 161
CviAII CATG 1 cut(s) 336
CviJI RGCY 4 cut(s) 142, 149, 259, 278
CviKI_1 RGCY 4 cut(s) 142, 149, 259, 278
DdeI CTNAG 1 cut(s) 28
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 298, 328
FaeI CATG 1 cut(s) 339
FaiI YATR 4 cut(s) 90, 211, 251, 337
FaqI GGGAC 1 cut(s) 273
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 2 cut(s) 273, 276
FokI GGATG 2 cut(s) 96, 148
Fsp4HI GCNGC 2 cut(s) 273, 276
GluI GCNGC 2 cut(s) 273, 276
Hin1II CATG 1 cut(s) 339
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 223, 305
Hpy188I TCNGA 4 cut(s) 156, 166, 188, 197
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 223, 305
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 177, 253, 335
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 1 cut(s) 339
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 154, 301
LpnPI CCDG 6 cut(s) 50, 135, 159, 285, 312, 315
Lsp1109I GCAGC 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 248
MluCI AATT 2 cut(s) 23, 60
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 69, 162
MslI CAYNNNNRTG 2 cut(s) 197, 248
MspR9I CCNGG 2 cut(s) 300, 330
MvaI CCWGG 2 cut(s) 300, 330
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 339
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 274, 277
Psp6I CCWGG 2 cut(s) 298, 328
PspGI CCWGG 2 cut(s) 298, 328
RseI CAYNNNNRTG 2 cut(s) 197, 248
SatI GCNGC 2 cut(s) 273, 276
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 300, 330
SetI ASST 5 cut(s) 144, 151, 172, 261, 280
SmiMI CAYNNNNRTG 2 cut(s) 197, 248
Sse9I AATT 2 cut(s) 23, 60
SsiI CCGC 2 cut(s) 273, 312
SspI AATATT 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 298, 328
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 23, 60
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 125
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 215
XapI RAATTY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.