AT2G13295
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0021902
Physical Location & Seq
Reverse (-)
5514094 .. 5514641
548 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13295.1

Sequence Viewer

Length: 342 bp
ATGGTGAGAGCTTATACTATAGTCTCTATGTTTTTGTTAACACTGTTGGTGACTAGAGTAACATCTTCCCAAGTTAATGCTCCGTGTACTTGGACAGAGATTTCTGAAGAATATGATTATTGTGGCGATTCTCTCACGCGTGGCGTTCCTTGGGTTTCTCCATTGAAAGTTTGTTGTGATACTATAAAATTGAACAAGATGAAATGCATATGCCAAGTCGTTACAAAAACGTTTTCGCAAAACTTTGACTTTTATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCTGGATCTTATTGCGGAGTTTACAAAGTCCCGAAAGGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

113

Amino Acids

12.61

Weight (kDa)

8.63

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 21 - 104 7.5e-08 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0021902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32280 AT2G13295 AT5G56480
prunus_persica Prupe.4G257900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 293
AccII CGCG 1 cut(s) 139
AciI CCGC 2 cut(s) 282, 312
AclI AACGTT 1 cut(s) 230
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 2 cut(s) 166, 193
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 11, 259
AluI AGCT 2 cut(s) 11, 259
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 310
AspLEI GCGC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 16, 61
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 149, 298
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 149, 298
Bsh1236I CGCG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 281, 311
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 281, 311
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 2 cut(s) 282, 312
BspFNI CGCG 1 cut(s) 139
BspPI GGATC 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 149, 298
BssMI GATC 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 275, 279
CviJI RGCY 2 cut(s) 11, 259
CviKI_1 RGCY 2 cut(s) 11, 259
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 292
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 2 cut(s) 209, 280
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 278, 282
FaqI GGGAC 2 cut(s) 281, 311
FatI CATG 2 cut(s) 274, 278
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 339
HhaI GCGC 1 cut(s) 338
Hin1II CATG 2 cut(s) 278, 282
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 1 cut(s) 128
HpaI GTTAAC 1 cut(s) 39
HphI GGTGA 2 cut(s) 16, 61
Hpy166II GTNNAC 3 cut(s) 39, 87, 319
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 3 cut(s) 39, 87, 319
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 207, 278
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 278, 282
HspAI GCGC 1 cut(s) 336
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 2 cut(s) 285, 312
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 49, 58, 220
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 2 cut(s) 57, 119
MflI RGATCY 1 cut(s) 302
MluCI AATT 1 cut(s) 188
MluI ACGCGT 1 cut(s) 137
MnlI CCTC 1 cut(s) 299
Mph1103I ATGCAT 2 cut(s) 209, 280
MseI TTAA 3 cut(s) 38, 75, 340
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 139
NdeI CATATG 1 cut(s) 209
NdeII GATC 1 cut(s) 302
NlaIII CATG 2 cut(s) 278, 282
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 2 cut(s) 209, 280
NspI RCATGY 1 cut(s) 282
PaeI GCATGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 284
PsiI TTATAA 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 38, 75, 340
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 13, 233, 261, 291
SfcI CTRYAG 1 cut(s) 18
SphI GCATGC 1 cut(s) 282
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 282, 312
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 1 cut(s) 233
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 3 cut(s) 38, 75, 340
Tru9I TTAA 3 cut(s) 38, 75, 340
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 282
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 2 cut(s) 209, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.