AT5G56480
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
22870259 .. 22870817
559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56480.1

Sequence Viewer

Length: 342 bp
ATGAAAGAACAGATATTTTGTCAGTTTTTAGTCGTAATGATGTTGTTGTCATCATCTCAAATTCAGGGGGAGAGATGTAATGATTCAGGCATCGAAGTTCTGAGGGGATGTCCAGATTCTATCGACAAGGAGCTGCCAACTCCGCCAAGACCATCCCAAGGTTGTTGCACTCTTGTCCGAATCATCGGGATGGAATGTGTATGCGAAGTCATCAATAAGGAAATCGAAGCCGCCATTGATATGCAAAAGCTAGTCAATGTCGCGGCTGCTTGTGGCCGTCCACTTGCTCCTGGCTCACAATGCGGAAGTTACCTAGTTCCCGGTGGCATGATTAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.23

Weight (kDa)

5.31

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 10 - 101 9.6e-13 Probable lipid transfer
Tryp_alpha_amyl PF00234 37 - 101 2.9e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32280 AT2G13295 AT5G56480
prunus_persica Prupe.4G257900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 263
AciI CCGC 4 cut(s) 143, 231, 263, 303
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 158
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 2 cut(s) 133, 250
AluI AGCT 2 cut(s) 133, 250
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 133, 266
ApoI RAATTY 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 321
BbvI GCAGC 2 cut(s) 120, 253
BccI CCATC 2 cut(s) 160, 184
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 321
BfaI CTAG 2 cut(s) 251, 314
BisI GCNGC 4 cut(s) 134, 231, 264, 267
BlsI GCNGC 4 cut(s) 135, 232, 265, 268
Bme1390I CCNGG 2 cut(s) 291, 321
BmrFI CCNGG 2 cut(s) 291, 321
BmsI GCATC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 113, 152, 195
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 120, 253
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 158
BsnI GGCC 1 cut(s) 276
BspACI CCGC 4 cut(s) 143, 231, 263, 303
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 113, 152, 195
BstFNI CGCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 142, 300
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 319
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 120, 253
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 3 cut(s) 113, 152, 195
CviAII CATG 1 cut(s) 328
CviJI RGCY 6 cut(s) 133, 230, 250, 266, 276, 294
CviKI_1 RGCY 6 cut(s) 133, 230, 250, 266, 276, 294
DdeI CTNAG 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 274
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 331
FaiI YATR 3 cut(s) 202, 242, 329
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 134, 231, 264, 267
FokI GGATG 3 cut(s) 120, 139, 202
Fsp4HI GCNGC 4 cut(s) 134, 231, 264, 267
FspBI CTAG 2 cut(s) 251, 314
GluI GCNGC 4 cut(s) 134, 231, 264, 267
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 321
Hin1II CATG 1 cut(s) 331
HinfI GANTC 3 cut(s) 83, 116, 180
HpaII CCGG 1 cut(s) 321
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 102, 179
Hpy188III TCNNGA 2 cut(s) 113, 187
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 168, 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 300
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 331
LmnI GCTCC 2 cut(s) 130, 292
LpnPI CCDG 6 cut(s) 50, 72, 126, 276, 303, 334
Lsp1109I GCAGC 2 cut(s) 120, 253
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 251, 314
MaeIII GTNAC 1 cut(s) 308
MluCI AATT 1 cut(s) 60
MnlI CCTC 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 188, 239
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 291, 321
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 142, 300
NciI CCSGG 1 cut(s) 321
NlaIII CATG 1 cut(s) 331
PfeI GAWTC 3 cut(s) 83, 116, 180
PkrI GCNGC 4 cut(s) 135, 232, 265, 268
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 188, 239
SatI GCNGC 4 cut(s) 134, 231, 264, 267
ScrFI CCNGG 2 cut(s) 291, 321
SetI ASST 4 cut(s) 135, 163, 252, 315
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 188, 239
Sse9I AATT 1 cut(s) 60
SsiI CCGC 4 cut(s) 143, 231, 263, 303
SspMI CTAG 2 cut(s) 251, 314
StyD4I CCNGG 2 cut(s) 289, 319
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 3 cut(s) 93, 123, 225
TasI AATT 1 cut(s) 60
TauI GCSGC 2 cut(s) 233, 266
TfiI GAWTC 3 cut(s) 83, 116, 180
TseI GCWGC 2 cut(s) 133, 266
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 60
XspI CTAG 2 cut(s) 251, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.