AT1G32510
NAC Family

NAC domain containing protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0021953
Physical Location & Seq
Forward (+)
11756691 .. 11758118
1428 bp
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UTR
Exon/CDS
Intron
AT1G32510.1

Sequence Viewer

Length: 852 bp
ATGGTAGGATCATTTTTACCACCTGGTTTCAGATTTTATCCAACAGATGAAGAACTTGTAGGTTATTACCTGCACAGAAGAAACGAAGGGCTTGAGATCGAGCTCGAAATAATCCCATTAATGGACTTATACAAGTTTGATCCTTGGGAACTTCCAGAGAAATCCTTCTTGCCAAATCGAGATATGGAATGGTTTTTCTTCTGTCATCGCGACAGAAAATACCAGAACGGATCTCGAATAAACAGAGCAACTAAATCTGGTTATTGGAAAGCCACTGGCAAAGATCGAAAAATCGTTTGCCACTCTTCTTCTTCTTCATCATCTTCCTCTATCACCGGCTGCCGAAAAACCCTAGTTTTTTATATGGGTCGAGCTCCTTTTGGTGGTAGAACCGAGTGGGTAATGCATGAGTATCGCCTCTTCGACAACGATACTTCACAAGGATCACTAAACTTCAAGGGAGACTTCGCGCTGTGTCGTGTGATAAAGAGGAATGAGCATACGCTTAAGAAATGTGAAATTATCTCACCAGAGGTTTCAGATGAGTCATTAAGCAATAATGTTAACAATTTTTGTCAAGCAAGTGACCTAGAAAAGGGTTCTTGTGATGCAAGTAACACACGTTTGTCTTCTCCTGATTTCATCCTTGAATCATCTTTTCAGGGAAATTCACATTCAAAAACAGAAGAAGATTCCGGTTTCCAAGTATTTACATTACCCGAATTCGAATATCCGCTAGAGGTTTTTGCAGATTTGAATTTCGATTTGGAAATGGAGGATCCATTCATGTTCGATTATCATCCAGAGCCTCATATGAACAATGAAGTCATGAGCCATCACATTCGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

283

Amino Acids

32.87

Weight (kDa)

5.25

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 140 1.8e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32510
rosa_multiflora Rmu_sc0005733.1_g000006
rosa_roxburghii Rroxscaffold_1G00055180
rosa_samantha Rh1AG301400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccII CGCG 2 cut(s) 210, 470
AciI CCGC 1 cut(s) 734
AclWI GGATC 6 cut(s) 16, 134, 238, 451, 773, 786
AcsI RAATTY 3 cut(s) 667, 722, 757
AfiI CCNNNNNNNGG 3 cut(s) 121, 383, 595
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 4 cut(s) 457, 650, 678, 757
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AleI CACNNNNGTG 1 cut(s) 843
AluBI AGCT 2 cut(s) 103, 374
AluI AGCT 2 cut(s) 103, 374
Alw21I GWGCWC 2 cut(s) 105, 376
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 6 cut(s) 16, 134, 238, 451, 773, 786
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 3 cut(s) 667, 722, 757
AseI ATTAAT 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 325, 519
AsuII TTCGAA 1 cut(s) 726
BamHI GGATCC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 105, 376
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 2 cut(s) 105, 376
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 843
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 3 cut(s) 353, 590, 737
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 383, 595
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 642, 799
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 3 cut(s) 121, 383, 595
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 56
Bsh1236I CGCG 2 cut(s) 210, 470
BsiHKAI GWGCWC 2 cut(s) 105, 376
BsiSI CCGG 2 cut(s) 336, 696
BslI CCNNNNNNNGG 3 cut(s) 121, 383, 595
BsmAI GTCTC 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 726
Bsp1286I GDGCHC 2 cut(s) 105, 376
Bsp143I GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 1 cut(s) 734
BspFNI CGCG 2 cut(s) 210, 470
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 1 cut(s) 780
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 6 cut(s) 16, 134, 238, 451, 773, 786
BspT104I TTCGAA 1 cut(s) 726
BspTI CTTAAG 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 310, 425
BstAFI CTTAAG 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 726
BstENI CCTNNNNNAGG 1 cut(s) 593
BstF5I GGATG 2 cut(s) 642, 799
BstFNI CGCG 2 cut(s) 210, 470
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 7 cut(s) 11, 99, 142, 233, 286, 446, 781
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstUI CGCG 2 cut(s) 210, 470
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 2 cut(s) 230, 778
BstYI RGATCY 2 cut(s) 230, 778
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 642, 799
BtsIMutI CAGTG 1 cut(s) 273
BtuMI TCGCGA 1 cut(s) 210
BveI ACCTGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 828
CfoI GCGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 335
CsiI ACCWGGT 1 cut(s) 22
CviAII CATG 3 cut(s) 407, 787, 829
CviJI RGCY 7 cut(s) 91, 103, 272, 339, 374, 808, 834
CviKI_1 RGCY 7 cut(s) 91, 103, 272, 339, 374, 808, 834
DpnI GATC 7 cut(s) 10, 98, 141, 232, 285, 445, 780
DpnII GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
Eam1104I CTCTTC 2 cut(s) 310, 425
EarI CTCTTC 2 cut(s) 310, 425
Ecl136II GAGCTC 2 cut(s) 103, 374
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 105, 376
Eco53kI GAGCTC 2 cut(s) 103, 374
EcoICRI GAGCTC 2 cut(s) 103, 374
EcoNI CCTNNNNNAGG 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 105, 376
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 3 cut(s) 410, 790, 832
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 3 cut(s) 406, 786, 828
FauNDI CATATG 1 cut(s) 813
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 2 cut(s) 629, 786
FriOI GRGCYC 2 cut(s) 105, 376
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 3 cut(s) 353, 590, 737
GlaI GCGC 1 cut(s) 471
GluI GCNGC 1 cut(s) 340
HapII CCGG 2 cut(s) 336, 696
HhaI GCGC 1 cut(s) 472
Hin1II CATG 3 cut(s) 410, 790, 832
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 3 cut(s) 545, 650, 692
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 2 cut(s) 336, 696
HphI GGTGA 2 cut(s) 325, 519
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 2 cut(s) 32, 541
Hpy188III TCNNGA 7 cut(s) 155, 179, 209, 234, 635, 803, 829
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 2 cut(s) 80, 175
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 4 cut(s) 73, 406, 611, 749
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 3 cut(s) 410, 790, 832
HspAI GCGC 1 cut(s) 470
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 598
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 3 cut(s) 353, 590, 737
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 2 cut(s) 584, 614
MalI GATC 7 cut(s) 10, 98, 141, 232, 285, 445, 780
MboI GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
MflI RGATCY 2 cut(s) 230, 778
MhlI GDGCHC 2 cut(s) 105, 376
MluCI AATT 5 cut(s) 519, 568, 667, 722, 757
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 7 cut(s) 337, 428, 483, 526, 733, 769, 819
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 4 cut(s) 119, 507, 551, 564
MslI CAYNNNNRTG 1 cut(s) 843
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 2 cut(s) 336, 696
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 2 cut(s) 210, 470
NdeI CATATG 1 cut(s) 813
NdeII GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
NlaIII CATG 3 cut(s) 410, 790, 832
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 1 cut(s) 584
NruI TCGCGA 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 408
NspV TTCGAA 1 cut(s) 726
OliI CACNNNNGTG 1 cut(s) 843
PagI TCATGA 1 cut(s) 828
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 650, 692
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 119
Psp124BI GAGCTC 2 cut(s) 105, 376
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 780
PsuI RGATCY 2 cut(s) 230, 778
RruI TCGCGA 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 843
SacI GAGCTC 2 cut(s) 105, 376
SaqAI TTAA 4 cut(s) 119, 507, 551, 564
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 7 cut(s) 8, 96, 139, 230, 283, 443, 778
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 105, 376
SetI ASST 9 cut(s) 25, 64, 72, 105, 376, 537, 591, 625, 744
SexAI ACCWGGT 1 cut(s) 22
SfaNI GCATC 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 2 cut(s) 92, 506
SmoI CTYRAG 2 cut(s) 92, 506
Sse9I AATT 5 cut(s) 519, 568, 667, 722, 757
SsiI CCGC 1 cut(s) 734
SspMI CTAG 3 cut(s) 353, 590, 737
SstI GAGCTC 2 cut(s) 105, 376
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 143
TaiI ACGT 1 cut(s) 625
TasI AATT 5 cut(s) 519, 568, 667, 722, 757
TfiI GAWTC 2 cut(s) 650, 692
Tru1I TTAA 4 cut(s) 119, 507, 551, 564
Tru9I TTAA 4 cut(s) 119, 507, 551, 564
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 6 cut(s) 63, 306, 631, 775, 830, 837
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 506
VspI ATTAAT 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 593
XapI RAATTY 3 cut(s) 667, 722, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 3 cut(s) 353, 590, 737
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.