Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0021953

Physical Location & Seq

Genomic Coordinates Forward (+)

53401556 .. 53410938

Gene Structure 9383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG301400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTGTAGATTGCTAAAATGCTTTTGGGCACAGCAAAATCACGTAGCAAGTCAAACGAGGAGTGGTTCTTTTTTACTCAATCGGTACAAGAACACCAAGAACATTAGTAGAGCCACAAAGGAAGGTGCATGGAAGTCCAATGGTAACGAGCGTGATGTAACCAAAGAGCATAACTCGGAATCTGTGATTGGGAAGAGGAAGCTTTTGACATTCTACTTGGGTGGCCAGATTAAAACGAACTGGGTGATGCATGAGTATTCCCTTCTTTCTCGTGCTAAGAACCAGGGGGACGTGGTTTTGTGCAAGCTAAGGAACAATGCTGATGACAAGGAGGCCAAGTCTGATATGAAGGACATTCAACAGGACTTTTCCTCCACCGAAGTGCTTGCAAGGAAGCCATCGCCTAATAGTGACTGTAATTGCTTATACTCTTCGATTGCAGCTGATGATCGCGAATTAACAGAAATTGTCAATTGGCTCCTTGTTGATCCTGAACCAGACTCGTATACTCTGTTCAATCACTCAACTACTATGCAGATACAGTTGGCCAGGTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

186

Amino Acids

21.25

Weight (kDa)

8.56

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	28 - 88	5.2e-12	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32510
rosa_multiflora	Rmu_sc0005733.1_g000006
rosa_roxburghii	Rroxscaffold_1G00055180
rosa_samantha	Rh1AG301400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	1 cut(s)	453
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	2 cut(s)	223, 546
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	359, 517
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	282, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	202, 307, 443
AluI	AGCT	3 cut(s)	202, 307, 443
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	3 cut(s)	223, 333, 546
ApeKI	GCWGC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	31
BalI	TGGCCA	2 cut(s)	225, 548
BauI	CACGAG	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	284, 550
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	284, 550
BmgBI	CACGTC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	284, 550
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
Bpu10I	CCTNAGC	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	283
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 356, 386
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	284, 550
BseDI	CCNNGG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	225, 335, 548
BslFI	GGGAC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	225, 335, 548
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	448, 487
Bsp68I	TCGCGA	1 cut(s)	453
BspANI	GGCC	3 cut(s)	225, 335, 548
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	448, 487
BssNAI	GTATAC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	270
Bst1107I	GTATAC	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	284, 550
Bst4CI	ACNGT	2 cut(s)	416, 543
Bst6I	CTCTTC	2 cut(s)	188, 436
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	305, 387
BstDEI	CTNAG	2 cut(s)	276, 308
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	2 cut(s)	451, 490
BstMBI	GATC	2 cut(s)	448, 487
BstNI	CCWGG	2 cut(s)	284, 550
BstSCI	CCNGG	2 cut(s)	282, 548
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	452
BstZ17I	GTATAC	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	225, 335, 548
BtgZI	GCGATG	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	292
BtuMI	TCGCGA	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	305, 387
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	129, 251
CviJI	RGCY	9 cut(s)	113, 202, 225, 307, 335, 397, 443, 478, 548
CviKI_1	RGCY	9 cut(s)	113, 202, 225, 307, 335, 397, 443, 478, 548
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	276, 308
DpnI	GATC	2 cut(s)	450, 489
DpnII	GATC	2 cut(s)	448, 487
EaeI	YGGCCR	2 cut(s)	223, 546
Eam1104I	CTCTTC	2 cut(s)	188, 436
EarI	CTCTTC	2 cut(s)	188, 436
EcoRII	CCWGG	2 cut(s)	282, 548
EcoT22I	ATGCAT	1 cut(s)	252
FaeI	CATG	2 cut(s)	132, 254
FaiI	YATR	7 cut(s)	130, 171, 252, 347, 427, 507, 533
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	128, 250
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	225, 335, 548
Hin1II	CATG	2 cut(s)	132, 254
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	179, 500
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	3 cut(s)	178, 343, 556
Hpy188III	TCNNGA	2 cut(s)	452, 491
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	116, 272, 343
HpyCH4III	ACNGT	2 cut(s)	416, 543
HpyCH4IV	ACGT	2 cut(s)	42, 291
HpyCH4V	TGCA	6 cut(s)	128, 250, 303, 389, 440, 535
HpyF3I	CTNAG	2 cut(s)	276, 308
HpySE526I	ACGT	2 cut(s)	42, 291
Hsp92II	CATG	2 cut(s)	132, 254
Kzo9I	GATC	2 cut(s)	448, 487
LmnI	GCTCC	1 cut(s)	483
LpnPI	CCDG	8 cut(s)	226, 239, 269, 296, 347, 504, 510, 535
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	2 cut(s)	42, 291
MaeIII	GTNAC	3 cut(s)	143, 157, 410
MalI	GATC	2 cut(s)	450, 489
MboI	GATC	2 cut(s)	448, 487
MboII	GAAGA	2 cut(s)	205, 423
MfeI	CAATTG	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	2 cut(s)	225, 548
MluCI	AATT	4 cut(s)	418, 455, 465, 472
MluNI	TGGCCA	2 cut(s)	225, 548
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	4 cut(s)	51, 189, 325, 382
Mox20I	TGGCCA	2 cut(s)	225, 548
Mph1103I	ATGCAT	1 cut(s)	252
MscI	TGGCCA	2 cut(s)	225, 548
MseI	TTAA	3 cut(s)	231, 458, 559
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	2 cut(s)	225, 548
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	284, 550
MunI	CAATTG	1 cut(s)	472
MvaI	CCWGG	2 cut(s)	284, 550
MvnI	CGCG	1 cut(s)	453
NdeII	GATC	2 cut(s)	448, 487
NlaIII	CATG	2 cut(s)	132, 254
NlaIV	GGNNCC	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	410
NruI	TCGCGA	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	282, 548
PspGI	CCWGG	2 cut(s)	282, 548
PspN4I	GGNNCC	1 cut(s)	479
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PvuII	CAGCTG	1 cut(s)	443
RruI	TCGCGA	1 cut(s)	453
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	3 cut(s)	231, 458, 559
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	2 cut(s)	448, 487
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	284, 550
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	7 cut(s)	45, 127, 204, 294, 309, 445, 554
SfaNI	GCATC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	418, 455, 465, 472
StyD4I	CCNGG	2 cut(s)	282, 548
TaaI	ACNGT	2 cut(s)	416, 543
TaiI	ACGT	2 cut(s)	45, 294
TaqI	TCGA	1 cut(s)	434
TasI	AATT	4 cut(s)	418, 455, 465, 472
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	231, 458, 559
Tru9I	TTAA	3 cut(s)	231, 458, 559
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.