Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0021953

Physical Location & Seq

Genomic Coordinates Forward (+)

76670584 .. 76672642

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTAGTAGTAAAGCAGGAGATGATTACTTGTCTTTGTTGAGTAGCTTGCCGCAGGGCTTCCGATTCCATCCCATAGAAGAGGAGCTGGTGAATCACTATTTGAAGAAGAAGATTCACGGCGAAGATTCCGGACATGTCAATAGCTTAATTCCTGAAATTGACTTCATCAAGTTCGAACCATGGGACTTACCTAAGCAATCGCAGAAGTCGAACAATGAGTGGTTCTTCTTCAACCAACTTGACCAGAAATGGAAGAAGTCCAAGCATATTGAAAGAAGCACAAAGGAAGGAAGATGGAAGTCCATCGGTACAAACCGTGATGTAACCAGCAAGGATGAAAACTCTCGATCAGTGATTGGGAAGAGGAAGCTTTTGACATTCTACTTGGGTGGCCAGATTAAAACGAACTGGGTGATGCATGAGTATTCCCTTCTTTCTCGTGCTAGGAACCAGGTGACTGATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGCTGCTTTGAAGACGCAGCGGGATTGGAGATCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

179

Amino Acids

20.89

Weight (kDa)

8.91

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	18 - 145	3.9e-36	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0021953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32510
rosa_multiflora	Rmu_sc0005733.1_g000006
rosa_roxburghii	Rroxscaffold_1G00055180
rosa_samantha	Rh1AG301400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	2 cut(s)	53, 521
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	394
AfaI	GTAC	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	106, 235, 275, 512
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	48, 88, 147, 373
AluI	AGCT	4 cut(s)	48, 88, 147, 373
AlwI	GGATC	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	504, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AsuHPI	GGTGA	4 cut(s)	103, 427, 469, 526
AsuII	TTCGAA	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	396
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	491, 530
BccI	CCATC	5 cut(s)	78, 291, 314, 458, 468
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	455
BfaI	CTAG	3 cut(s)	6, 447, 538
BisI	GCNGC	3 cut(s)	53, 505, 519
BlsI	GCNGC	3 cut(s)	54, 506, 520
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	455
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	70, 343
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	491, 530
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	177
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	4 cut(s)	350, 483, 490, 531
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	2 cut(s)	53, 521
BspANI	GGCC	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	4 cut(s)	350, 483, 490, 531
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	75, 359
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	70, 343
BstKTI	GATC	4 cut(s)	353, 486, 493, 534
BstMBI	GATC	4 cut(s)	350, 483, 490, 531
BstMCI	CGRYCG	1 cut(s)	486
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	491, 530
BstV2I	GAAGAC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	70, 343
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	50
CseI	GACGC	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	3 cut(s)	137, 183, 422
CviJI	RGCY	8 cut(s)	5, 48, 60, 88, 147, 373, 396, 504
CviKI_1	RGCY	8 cut(s)	5, 48, 60, 88, 147, 373, 396, 504
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	4 cut(s)	352, 485, 492, 533
DpnII	GATC	4 cut(s)	350, 483, 490, 531
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	75, 359
EarI	CTCTTC	2 cut(s)	75, 359
Eco130I	CCWWGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	140, 186, 425
FaiI	YATR	5 cut(s)	77, 138, 184, 270, 423
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	136, 182, 421
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	53, 505, 519
FokI	GGATG	2 cut(s)	57, 350
Fsp4HI	GCNGC	3 cut(s)	53, 505, 519
FspBI	CTAG	3 cut(s)	6, 447, 538
GluI	GCNGC	3 cut(s)	53, 505, 519
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	140, 186, 425
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	4 cut(s)	66, 94, 115, 128
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	4 cut(s)	103, 427, 469, 526
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	3 cut(s)	132, 155, 348
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	2 cut(s)	284, 443
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	140, 186, 425
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	4 cut(s)	350, 483, 490, 531
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	2 cut(s)	491, 530
LweI	GCATC	1 cut(s)	408
MabI	ACCWGGT	1 cut(s)	453
MaeI	CTAG	3 cut(s)	6, 447, 538
MaeIII	GTNAC	2 cut(s)	325, 457
MalI	GATC	4 cut(s)	352, 485, 492, 533
MboI	GATC	4 cut(s)	350, 483, 490, 531
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	2 cut(s)	150, 159
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	2 cut(s)	76, 360
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	423
MroI	TCCGGA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	149, 402
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	182
NdeII	GATC	4 cut(s)	350, 483, 490, 531
NlaIII	CATG	3 cut(s)	140, 186, 425
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	177
PciI	ACATGT	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	66, 94, 115, 128
PkrI	GCNGC	3 cut(s)	54, 506, 520
Ple19I	CGATCG	1 cut(s)	486
PscI	ACATGT	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	452
PvuI	CGATCG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	149, 402
SatI	GCNGC	3 cut(s)	53, 505, 519
Sau3AI	GATC	4 cut(s)	350, 483, 490, 531
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	7 cut(s)	50, 90, 149, 196, 375, 459, 539
SexAI	ACCWGGT	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	177
Sse9I	AATT	2 cut(s)	150, 159
SsiI	CCGC	2 cut(s)	53, 521
SspMI	CTAG	3 cut(s)	6, 447, 538
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	177, 212, 349
TasI	AATT	2 cut(s)	150, 159
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	4 cut(s)	66, 94, 115, 128
Tru1I	TTAA	2 cut(s)	149, 402
Tru9I	TTAA	2 cut(s)	149, 402
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	504, 518
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	157, 354
TspRI	CASTG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	3 cut(s)	6, 447, 538
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.