Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023567

Physical Location & Seq

Genomic Coordinates Forward (+)

12072611 .. 12073965

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGTTCGTCTAACGGAGGTGTACCGCCTGGTTTTCGGTTTCATCCAACGGACGAAGAACTTCTTCATTACTACTTGAAGAAGAAGATTTCTTATGAAAAGTTTGAGATGGAAGTCATCAAAGAGGTTGATTTGAACAAGATTGAGCCGTGGGATTTACAAGATAGATGCAAAATAGGATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCACTCCGGTTTTTGGAAGGCGACAGGACGTGACAAATGCATAAGAAATTCTTACAAGAAGATCGGCATGAGGAAGACTCTTGTATTCTACAAAGGAAGAGCTCCTCATGGCCAAAAGACAGATTGGATCATGCACGAGTACCGTATCGAAGACACTGAAGATGACCCTTGTGAAGATGGATGGGTTGTTTGTAGAGTGTTCAAGAAGAAAAATCTGTTCAAAGTAGGGAATGATGTTGGCTCAAACATCAGCAATAATAGGCTTGAAGCTCGTAGTTTCATCCGAAGAGAAAGCCCTTACCAAGGAATCTCAATGTTTGAGCTTAACAAGCCTGAAGAGATTAGTGTTCATCAATATCCTCAACCACCAATGTTTCAACCTCATCACAAGCCTCTTTCAATAGGCTATGACTATTCATTGGCTCTTCTACCAAGAGAAAGCGAGTACCAACAAGCGTGTCAGCCATCAGGGGTTGAGGTTGGCACGTGCAAGGCAGTAAGTGAATGGGGAATAGTGAATTGTAACATGGTGAGTCATGAGGACTCGTCTAGAGCGATGAGGTTTGAAGATGACGGTAACAACACTTCTTCCACGGTCCAGCCACCTTCTAATCTGCTTTCATTGCGCGGTGAAAATGGATTTCTTGGGTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

305

Amino Acids

35.25

Weight (kDa)

8.07

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 136	4.2e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0023567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33280 AT3G61910
rosa_samantha	Rh7CG087200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	888
AciI	CCGC	2 cut(s)	26, 888
AclWI	GGATC	2 cut(s)	187, 395
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	3 cut(s)	193, 438, 615
AcvI	CACGTG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	24, 401, 707
AfiI	CCNNNNNNNGG	2 cut(s)	273, 563
AgsI	TTSAA	8 cut(s)	79, 136, 463, 481, 527, 638, 660, 827
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	362, 530, 583
AluI	AGCT	3 cut(s)	362, 530, 583
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	187, 395
AoxI	GGCC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	2 cut(s)	60, 63
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	856
AsuHPI	GGTGA	2 cut(s)	802, 902
AvaII	GGWCC	1 cut(s)	856
BalI	TGGCCA	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	829, 861
BauI	CACGAG	1 cut(s)	395
BbrPI	CACGTG	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	341, 417
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	4 cut(s)	103, 431, 435, 733
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	810
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	856
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	856
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	2 cut(s)	341, 417
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BsaAI	YACGTR	1 cut(s)	747
BsaJI	CCNNGG	3 cut(s)	149, 562, 852
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 563
Bse3DI	GCAATG	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	149, 562, 852
BseGI	GGATG	3 cut(s)	43, 446, 540
BseLI	CCNNNNNNNGG	2 cut(s)	273, 563
BseMI	GCAATG	1 cut(s)	881
BseRI	GAGGAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	273, 563
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	179, 321, 387
BspACI	CCGC	2 cut(s)	26, 888
BspANI	GGCC	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	888
BspHI	TCATGA	1 cut(s)	796
BspPI	GGATC	2 cut(s)	187, 395
BspQI	GCTCTTC	2 cut(s)	352, 690
BsrDI	GCAATG	1 cut(s)	881
BssECI	CCNNGG	3 cut(s)	149, 562, 852
BssMI	GATC	3 cut(s)	179, 321, 387
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	254, 404, 836, 856
Bst6I	CTCTTC	4 cut(s)	352, 541, 591, 690
BstBAI	YACGTR	1 cut(s)	747
BstDSI	CCRYGG	2 cut(s)	149, 852
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	3 cut(s)	43, 446, 540
BstFNI	CGCG	1 cut(s)	888
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	3 cut(s)	182, 324, 390
BstMBI	GATC	3 cut(s)	179, 321, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	589, 883
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	888
BstV2I	GAAGAC	2 cut(s)	341, 417
BsuRI	GGCC	1 cut(s)	372
BtgI	CCRYGG	2 cut(s)	149, 852
BtgZI	GCGATG	1 cut(s)	830
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	43, 446, 540
BtsIMutI	CAGTG	1 cut(s)	414
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	1 cut(s)	856
Csp6I	GTAC	3 cut(s)	23, 400, 706
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviAII	CATG	5 cut(s)	328, 368, 391, 787, 797
CviQI	GTAC	3 cut(s)	23, 400, 706
DpnI	GATC	3 cut(s)	181, 323, 389
DpnII	GATC	3 cut(s)	179, 321, 387
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	4 cut(s)	352, 541, 591, 690
EarI	CTCTTC	4 cut(s)	352, 541, 591, 690
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	856
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	193, 438, 615
Eco72I	CACGTG	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	5 cut(s)	331, 371, 394, 790, 800
FaiI	YATR	8 cut(s)	96, 302, 329, 369, 392, 669, 788, 798
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 295, 327
FatI	CATG	5 cut(s)	327, 367, 390, 786, 796
FokI	GGATG	3 cut(s)	30, 453, 527
FriOI	GRGCYC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	1 cut(s)	887
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	5 cut(s)	331, 371, 394, 790, 800
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HinfI	GANTC	4 cut(s)	337, 567, 793, 803
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	802, 902
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	234, 545
Hpy188III	TCNNGA	3 cut(s)	463, 797, 810
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	271, 876
HpyCH4III	ACNGT	4 cut(s)	254, 404, 836, 856
HpyCH4IV	ACGT	2 cut(s)	289, 746
HpyCH4V	TGCA	5 cut(s)	171, 257, 300, 394, 750
HpyF10VI	GCNNNNNNNGC	2 cut(s)	589, 883
HpySE526I	ACGT	2 cut(s)	289, 746
Hsp92II	CATG	5 cut(s)	331, 371, 394, 790, 800
HspAI	GCGC	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	179, 321, 387
LguI	GCTCTTC	2 cut(s)	352, 690
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	8 cut(s)	15, 42, 222, 270, 280, 606, 714, 872
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	2 cut(s)	289, 746
MaeIII	GTNAC	3 cut(s)	290, 782, 836
MalI	GATC	3 cut(s)	181, 323, 389
MboI	GATC	3 cut(s)	179, 321, 387
MhlI	GDGCHC	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	2 cut(s)	307, 778
MluNI	TGGCCA	1 cut(s)	372
MlyI	GAGTC	3 cut(s)	331, 797, 802
MmeI	TCCRAC	2 cut(s)	71, 257
Mox20I	TGGCCA	1 cut(s)	372
Mph1103I	ATGCAT	1 cut(s)	302
MroXI	GAANNNNTTC	2 cut(s)	60, 63
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	2 cut(s)	585, 916
Msp20I	TGGCCA	1 cut(s)	372
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	888
MwoI	GCNNNNNNNGC	2 cut(s)	589, 883
NdeII	GATC	3 cut(s)	179, 321, 387
NlaIII	CATG	5 cut(s)	331, 371, 394, 790, 800
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	302
PagI	TCATGA	1 cut(s)	796
PciSI	GCTCTTC	2 cut(s)	352, 690
PcsI	WCGNNNNNNNCGW	1 cut(s)	812
PdmI	GAANNNNTTC	2 cut(s)	60, 63
PfeI	GAWTC	1 cut(s)	567
PflFI	GACNNNGTC	1 cut(s)	238
PleI	GAGTC	3 cut(s)	331, 797, 801
PmaCI	CACGTG	1 cut(s)	747
PmlI	CACGTG	1 cut(s)	747
PpsI	GAGTC	3 cut(s)	331, 797, 801
Ppu21I	YACGTR	1 cut(s)	747
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	856
PsyI	GACNNNGTC	1 cut(s)	238
RsaI	GTAC	3 cut(s)	24, 401, 707
RsaNI	GTAC	3 cut(s)	23, 400, 706
SacI	GAGCTC	1 cut(s)	364
SapI	GCTCTTC	2 cut(s)	352, 690
SaqAI	TTAA	2 cut(s)	585, 916
Sau3AI	GATC	3 cut(s)	179, 321, 387
Sau96I	GGNCC	1 cut(s)	856
SchI	GAGTC	3 cut(s)	331, 797, 802
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	158
SinI	GGWCC	1 cut(s)	856
Sse9I	AATT	2 cut(s)	307, 778
SsiI	CCGC	2 cut(s)	26, 888
SspMI	CTAG	1 cut(s)	810
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	4 cut(s)	254, 404, 836, 856
TaiI	ACGT	2 cut(s)	292, 749
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	307, 778
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	585, 916
Tru9I	TTAA	2 cut(s)	585, 916
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	7 cut(s)	32, 56, 111, 529, 599, 666, 870
TspGWI	ACGGA	2 cut(s)	30, 65
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	856
XagI	CCTNNNNNAGG	1 cut(s)	561
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XmnI	GAANNNNTTC	2 cut(s)	60, 63
XspI	CTAG	1 cut(s)	810
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.