AT3G61910
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0023567
Physical Location & Seq
Reverse (-)
22929006 .. 22930456
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61910.1

Sequence Viewer

Length: 1005 bp
ATGAACATATCAGTAAACGGACAGTCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGAAAATCTCTAACATCAAGATCGATCTCGATGTTATTCCTGACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACTTTTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGAACCAACAGAGCCACCACGGTCGGATTTTGGAAAGCGACGGGACGTGACAAGACCATATATACCAATGGTGATAGAATCGGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGTGTGGCGATCATGACGTCAACGTAGAAACGTGTGATGTCATAGGAAGTGACGAAGGATGGGTGGTGTGTCGTGTTTTCAAGAAAAATAACCTTTGCAAAAACATGATTAGTAGTAGCCCGGCGAGTTCGGTGAAAACGCCGTCGTTCAATGAGGAGACTATCGAGCAACTTCTCGAAGTTATGGGGCAATCTTGTAAAGGAGAGATAGTTTTAGACCCTTTCTTAAAACTCCCTAACCTCGAATGCCATAACAACACCACCATCACGAGTTATCAGTGGTTAATCGACGACCAAGTCAACAACTGCCACGTCAGCAAAGTTATGGATCCCAGCTTCATCACTAGCTGGGCCGCTTTGGATCGGCTCGTTGCCTCACAGTTAAATGGGCCCAACTCGTATTCAATACCAGCCGTTAATGAGACTTCACAATCACCGTATCATGGACTGAACCGGTCCGGTTGTAATACCGGTTTAACACCAGATTACTATATACCGGAGATTGATTTATGGAACGAGGCAGATTTCGCGAGAACGACATGCCACTTGTTGAACGGTAGTGGATAA

Protein Analysis

334

Amino Acids

37.86

Weight (kDa)

5.74

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 139 1.7e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33280 AT3G61910
rosa_samantha Rh7CG087200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 734
AatII GACGTC 1 cut(s) 459
AccII CGCG 1 cut(s) 968
AciI CCGC 3 cut(s) 88, 197, 792
AclWI GGATC 4 cut(s) 404, 761, 774, 807
AcyI GRCGYC 2 cut(s) 194, 456
AfaI GTAC 2 cut(s) 33, 212
AfiI CCNNNNNNNGG 2 cut(s) 61, 881
AflIII ACRYGT 1 cut(s) 470
AgeI ACCGGT 2 cut(s) 891, 908
AgsI TTSAA 6 cut(s) 76, 170, 520, 589, 843, 991
AjiI CACGTC 2 cut(s) 299, 751
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 70, 151, 774, 786
AluI AGCT 4 cut(s) 70, 151, 774, 786
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 590, 854
AlwI GGATC 4 cut(s) 404, 761, 774, 807
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 2 cut(s) 789, 827
ApaI GGGCCC 1 cut(s) 831
AseI ATTAAT 1 cut(s) 431
AsiGI ACCGGT 2 cut(s) 891, 908
AspS9I GGNCC 4 cut(s) 789, 827, 828, 894
AsuC2I CCSGG 2 cut(s) 247, 560
AsuHPI GGTGA 4 cut(s) 44, 335, 583, 864
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 894
BaeGI GKGCMC 1 cut(s) 831
BamHI GGATCC 1 cut(s) 766
BanII GRGCYC 3 cut(s) 72, 373, 831
BauI CACGAG 2 cut(s) 439, 706
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 492, 710
BceAI ACGGC 2 cut(s) 565, 836
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 249
BcnI CCSGG 2 cut(s) 247, 560
BcoDI GTCTC 2 cut(s) 590, 854
BfaI CTAG 2 cut(s) 252, 783
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 2 cut(s) 197, 792
BlsI GCNGC 2 cut(s) 198, 793
Bme1390I CCNGG 3 cut(s) 39, 247, 560
Bme18I GGWCC 1 cut(s) 894
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 2 cut(s) 299, 751
BmgT120I GGNCC 4 cut(s) 789, 827, 828, 894
BmiI GGNNCC 2 cut(s) 768, 829
BmrFI CCNGG 3 cut(s) 39, 247, 560
BmsI GCATC 1 cut(s) 327
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 346
BpuMI CCSGG 2 cut(s) 247, 560
Bsa29I ATCGAT 1 cut(s) 114
BsaHI GRCGYC 2 cut(s) 194, 456
BsaJI CCNNGG 3 cut(s) 60, 158, 270
BsaWI WCCGGW 4 cut(s) 891, 896, 908, 934
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 881
Bse118I RCCGGY 2 cut(s) 891, 908
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 60, 158, 270
BseGI GGATG 2 cut(s) 342, 503
BseLI CCNNNNNNNGG 2 cut(s) 61, 881
BseRI GAGGAG 2 cut(s) 427, 608
BseSI GKGCMC 1 cut(s) 831
BseYI CCCAGC 2 cut(s) 770, 786
Bsh1236I CGCG 1 cut(s) 968
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 791, 829
BshTI ACCGGT 2 cut(s) 891, 908
BshVI ATCGAT 1 cut(s) 114
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 6 cut(s) 246, 560, 892, 897, 909, 935
BslFI GGGAC 2 cut(s) 262, 309
BslI CCNNNNNNNGG 2 cut(s) 61, 881
BsmAI GTCTC 2 cut(s) 590, 854
BsmFI GGGAC 2 cut(s) 262, 309
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 2 cut(s) 791, 829
BsoBI CYCGRG 1 cut(s) 152
Bsp120I GGGCCC 1 cut(s) 827
Bsp1286I GDGCHC 3 cut(s) 72, 373, 831
Bsp143I GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
Bsp68I TCGCGA 1 cut(s) 968
BspACI CCGC 3 cut(s) 88, 197, 792
BspANI GGCC 2 cut(s) 791, 829
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 1 cut(s) 968
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 768, 829
BspPI GGATC 4 cut(s) 404, 761, 774, 807
BspQI GCTCTTC 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 891, 908
BssAI RCCGGY 2 cut(s) 891, 908
BssECI CCNNGG 3 cut(s) 60, 158, 270
BssMI GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
BssNI GRCGYC 2 cut(s) 194, 456
BssSI CACGAG 2 cut(s) 439, 706
BssT1I CCWWGG 1 cut(s) 158
Bst2BI CACGAG 2 cut(s) 439, 706
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 5 cut(s) 24, 274, 819, 876, 995
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 2 cut(s) 194, 456
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 342, 503
BstFNI CGCG 1 cut(s) 968
BstKTI GATC 7 cut(s) 114, 118, 142, 399, 451, 769, 802
BstMAI GTCTC 2 cut(s) 590, 854
BstMBI GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 346, 753, 965
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 981
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 3 cut(s) 37, 245, 558
BstSLI GKGCMC 1 cut(s) 831
BstUI CGCG 1 cut(s) 968
BstV2I GAAGAC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
Bsu15I ATCGAT 1 cut(s) 114
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 791, 829
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 2 cut(s) 299, 751
BtsCI GGATG 2 cut(s) 342, 503
BtsIMutI CAGTG 1 cut(s) 722
BtuMI TCGCGA 1 cut(s) 968
CciI TCATGA 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 891, 908
Cfr13I GGNCC 4 cut(s) 789, 827, 828, 894
ClaI ATCGAT 1 cut(s) 114
CpoI CGGWCCG 1 cut(s) 894
CseI GACGC 2 cut(s) 202, 355
Csp6I GTAC 2 cut(s) 32, 211
CspAI ACCGGT 2 cut(s) 891, 908
CspI CGGWCCG 1 cut(s) 894
CviAII CATG 6 cut(s) 377, 400, 452, 544, 881, 978
CviQI GTAC 2 cut(s) 32, 211
DpnI GATC 7 cut(s) 113, 117, 141, 398, 450, 768, 801
DpnII GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 3 cut(s) 72, 373, 831
Eco47I GGWCC 1 cut(s) 894
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 3 cut(s) 72, 373, 831
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 6 cut(s) 380, 403, 455, 547, 884, 981
FaqI GGGAC 2 cut(s) 262, 309
FatI CATG 6 cut(s) 376, 399, 451, 543, 880, 977
Fnu4HI GCNGC 2 cut(s) 197, 792
FokI GGATG 2 cut(s) 349, 510
FriOI GRGCYC 3 cut(s) 72, 373, 831
Fsp4HI GCNGC 2 cut(s) 197, 792
FspBI CTAG 2 cut(s) 252, 783
GluI GCNGC 2 cut(s) 197, 792
GsaI CCCAGC 2 cut(s) 774, 790
HaeIII GGCC 2 cut(s) 791, 829
HapII CCGG 6 cut(s) 246, 560, 892, 897, 909, 935
HgaI GACGC 2 cut(s) 202, 355
Hin1I GRCGYC 2 cut(s) 194, 456
Hin1II CATG 6 cut(s) 380, 403, 455, 547, 884, 981
HincII GTYRAC 2 cut(s) 460, 739
HindII GTYRAC 2 cut(s) 460, 739
HinfI GANTC 2 cut(s) 330, 414
HpaII CCGG 6 cut(s) 246, 560, 892, 897, 909, 935
HphI GGTGA 4 cut(s) 44, 335, 583, 864
Hpy166II GTNNAC 3 cut(s) 16, 460, 739
Hpy188I TCNGA 3 cut(s) 278, 384, 391
Hpy8I GTNNAC 3 cut(s) 16, 460, 739
Hpy99I CGWCG 5 cut(s) 196, 295, 422, 586, 731
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 5 cut(s) 24, 274, 819, 876, 995
HpyCH4IV ACGT 5 cut(s) 298, 456, 462, 470, 750
HpyCH4V TGCA 2 cut(s) 403, 537
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 753, 965
HpySE526I ACGT 5 cut(s) 298, 456, 462, 470, 750
Hsp92I GRCGYC 2 cut(s) 194, 456
Hsp92II CATG 6 cut(s) 380, 403, 455, 547, 884, 981
Kzo9I GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
LguI GCTCTTC 1 cut(s) 60
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 252, 783
MaeII ACGT 5 cut(s) 298, 456, 462, 470, 750
MaeIII GTNAC 3 cut(s) 24, 299, 488
MalI GATC 7 cut(s) 113, 117, 141, 398, 450, 768, 801
MboI GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
MboII GAAGA 2 cut(s) 77, 346
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 3 cut(s) 72, 373, 831
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 9 cut(s) 45, 55, 95, 384, 448, 586, 689, 823, 949
MseI TTAA 6 cut(s) 431, 665, 722, 821, 855, 914
MspI CCGG 6 cut(s) 246, 560, 892, 897, 909, 935
MspR9I CCNGG 3 cut(s) 39, 247, 560
Mva1269I GAATGC 1 cut(s) 689
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 3 cut(s) 346, 753, 965
NciI CCSGG 2 cut(s) 247, 560
NdeII GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
NlaIII CATG 6 cut(s) 380, 403, 455, 547, 884, 981
NlaIV GGNNCC 2 cut(s) 768, 829
NmuCI GTSAC 3 cut(s) 24, 299, 488
NruI TCGCGA 1 cut(s) 968
NspI RCATGY 1 cut(s) 981
PaeR7I CTCGAG 1 cut(s) 152
PagI TCATGA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 60
PctI GAATGC 1 cut(s) 689
PfeI GAWTC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 734
PinAI ACCGGT 2 cut(s) 891, 908
PkrI GCNGC 2 cut(s) 198, 793
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PshAI GACNNNNGTC 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 37
PspFI CCCAGC 2 cut(s) 770, 786
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 768, 829
PspOMI GGGCCC 1 cut(s) 827
PspPI GGNCC 4 cut(s) 789, 827, 828, 894
PspXI VCTCGAGB 1 cut(s) 152
PsuI RGATCY 1 cut(s) 766
PsyI GACNNNGTC 1 cut(s) 734
RruI TCGCGA 1 cut(s) 968
RsaI GTAC 2 cut(s) 33, 212
RsaNI GTAC 2 cut(s) 32, 211
Rsr2I CGGWCCG 1 cut(s) 894
RsrII CGGWCCG 1 cut(s) 894
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 6 cut(s) 431, 665, 722, 821, 855, 914
SatI GCNGC 2 cut(s) 197, 792
Sau3AI GATC 7 cut(s) 111, 115, 139, 396, 448, 766, 799
Sau96I GGNCC 4 cut(s) 789, 827, 828, 894
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 3 cut(s) 39, 247, 560
SduI GDGCHC 3 cut(s) 72, 373, 831
SfaNI GCATC 1 cut(s) 327
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 1 cut(s) 894
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 3 cut(s) 88, 197, 792
SspMI CTAG 2 cut(s) 252, 783
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 37, 245, 558
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 5 cut(s) 24, 274, 819, 876, 995
TaiI ACGT 5 cut(s) 301, 459, 465, 473, 753
TaqI TCGA 9 cut(s) 114, 120, 153, 367, 417, 603, 615, 681, 726
TauI GCSGC 2 cut(s) 199, 794
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 6 cut(s) 431, 665, 722, 821, 855, 914
Tru9I TTAA 6 cut(s) 431, 665, 722, 821, 855, 914
TscAI CASTG 1 cut(s) 722
TseFI GTSAC 3 cut(s) 24, 299, 488
Tsp45I GTSAC 3 cut(s) 24, 299, 488
TspDTI ATGAA 2 cut(s) 17, 766
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 722
Tth111I GACNNNGTC 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 894
VspI ATTAAT 1 cut(s) 431
XceI RCATGY 1 cut(s) 981
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 2 cut(s) 252, 783
ZraI GACGTC 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.