Rh7CG087200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0023567
Physical Location & Seq
Reverse (-)
6568352 .. 6569032
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG087200.1

Sequence Viewer

Length: 540 bp
ATGTCTGCAGAGGATCACATGAATCTATCTATAAATGGTCAGTCTCAGGTCCCTCCAGGCTTTCGGTTCCATCCAACAGAAGAGGAGCTTCTTCACTACTATCTCAGGAAGAAAGTTGCCTATGAGAGGATTGATCTTGACGTCATTCGAGAGGTTGATCTTAACAAGCTCGAGCCATGGGACATTCAAGAGAAGTGCAAGATAGGTTCCACCCCGCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGTACTCGAACAAATCGAGCAACTGCTGCCGGATTTTGGAAGGCCACCGGCCGTGACAAGATCATCTACAGTGGCATTCGAAGAATCGGATTGAGAAAGACGCTTGTGTTTTACAAGGGACGAGCTCCCCACGGACAAAAGTCAGATTGGATCATGCATGAATACAGACTTGATGAAAGCAGCAGCAGTGTTGAAACCACAGTAAGCCGGCCAGCTATACATACATATACGCCATCAAATATTTATCAGTGGCGAATTGTCATACAGTTGGAATAA

Protein Analysis

179

Amino Acids

21.04

Weight (kDa)

9.23

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 145 9.7e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33280 AT3G61910
rosa_samantha Rh7CG087200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 21, 422
AcoI YGGCCR 2 cut(s) 313, 473
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 230, 268
AfiI CCNNNNNNNGG 2 cut(s) 126, 300
AgsI TTSAA 2 cut(s) 188, 458
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 4 cut(s) 88, 169, 389, 479
AluI AGCT 4 cut(s) 88, 169, 389, 479
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 2 cut(s) 21, 422
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 3 cut(s) 306, 313, 473
ApeKI GCWGC 3 cut(s) 290, 444, 447
AspS9I GGNCC 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 3 cut(s) 277, 456, 459
BccI CCATC 2 cut(s) 78, 505
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 2 cut(s) 6, 331
BisI GCNGC 3 cut(s) 291, 445, 448
BlsI GCNGC 3 cut(s) 292, 446, 449
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 3 cut(s) 51, 68, 208
BmrFI CCNGG 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 176, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 300
Bse118I RCCGGY 2 cut(s) 311, 471
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 176, 394
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 126, 300
BseMII CTCAG 2 cut(s) 59, 118
BseRI GAGGAG 1 cut(s) 98
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 3 cut(s) 277, 456, 459
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 3 cut(s) 308, 315, 475
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 294, 312, 472
BslFI GGGAC 3 cut(s) 35, 194, 396
BslI CCNNNNNNNGG 2 cut(s) 126, 300
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 3 cut(s) 35, 194, 396
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 3 cut(s) 308, 315, 475
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 5 cut(s) 13, 133, 157, 324, 414
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 215
BspANI GGCC 3 cut(s) 308, 315, 475
BspCNI CTCAG 2 cut(s) 58, 117
BspLI GGNNCC 3 cut(s) 51, 68, 208
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 21, 422
BspT104I TTCGAA 1 cut(s) 343
BsrFI RCCGGY 2 cut(s) 311, 471
BssAI RCCGGY 2 cut(s) 311, 471
BssECI CCNNGG 2 cut(s) 176, 394
BssMI GATC 5 cut(s) 13, 133, 157, 324, 414
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 335, 466, 531
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 473, 477
BstDEI CTNAG 2 cut(s) 45, 104
BstDSI CCRYGG 2 cut(s) 176, 394
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 5 cut(s) 16, 136, 160, 327, 417
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 5 cut(s) 13, 133, 157, 324, 414
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 57
BstPAI GACNNNNGTC 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 2 cut(s) 6, 331
BstV1I GCAGC 3 cut(s) 277, 456, 459
BstZI CGGCCG 1 cut(s) 313
BsuRI GGCC 3 cut(s) 308, 315, 475
BtgI CCRYGG 2 cut(s) 176, 394
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 3 cut(s) 340, 457, 518
Cac8I GCNNGC 2 cut(s) 473, 477
Cfr10I RCCGGY 2 cut(s) 311, 471
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 229, 267
CviAII CATG 4 cut(s) 19, 177, 418, 422
CviQI GTAC 2 cut(s) 229, 267
DdeI CTNAG 2 cut(s) 45, 104
DpnI GATC 5 cut(s) 15, 135, 159, 326, 416
DpnII GATC 5 cut(s) 13, 133, 157, 324, 414
EaeI YGGCCR 2 cut(s) 313, 473
EagI CGGCCG 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 389
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 389
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 4 cut(s) 22, 180, 421, 425
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FaqI GGGAC 3 cut(s) 35, 194, 396
FatI CATG 4 cut(s) 18, 176, 417, 421
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 291, 445, 448
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 3 cut(s) 291, 445, 448
GluI GCNGC 3 cut(s) 291, 445, 448
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 3 cut(s) 308, 315, 475
HapII CCGG 3 cut(s) 294, 312, 472
HgaI GACGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 4 cut(s) 22, 180, 421, 425
HinfI GANTC 2 cut(s) 22, 348
HpaII CCGG 3 cut(s) 294, 312, 472
Hpy188I TCNGA 2 cut(s) 353, 409
Hpy188III TCNNGA 4 cut(s) 106, 137, 149, 188
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 335, 466, 531
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 8, 198, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 45, 104
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 4 cut(s) 22, 180, 421, 425
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 5 cut(s) 13, 133, 157, 324, 414
LmnI GCTCC 2 cut(s) 85, 394
LpnPI CCDG 9 cut(s) 32, 42, 69, 91, 249, 307, 325, 485, 489
Lsp1109I GCAGC 3 cut(s) 277, 456, 459
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 317
MalI GATC 5 cut(s) 15, 135, 159, 326, 416
MboI GATC 5 cut(s) 13, 133, 157, 324, 414
MboII GAAGA 5 cut(s) 83, 92, 121, 226, 357
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 1 cut(s) 519
MmeI TCCRAC 2 cut(s) 98, 513
MnlI CCTC 5 cut(s) 4, 63, 76, 120, 145
Mph1103I ATGCAT 1 cut(s) 423
MroNI GCCGGC 1 cut(s) 471
MseI TTAA 1 cut(s) 162
MspI CCGG 3 cut(s) 294, 312, 472
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 290
NaeI GCCGGC 1 cut(s) 473
NcoI CCATGG 1 cut(s) 176
NdeII GATC 5 cut(s) 13, 133, 157, 324, 414
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 4 cut(s) 22, 180, 421, 425
NlaIV GGNNCC 3 cut(s) 51, 68, 208
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 423
NspV TTCGAA 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PctI GAATGC 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 22, 348
PkrI GCNGC 3 cut(s) 292, 446, 449
PpuMI RGGWCCY 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 51, 68, 208
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PspXI VCTCGAGB 1 cut(s) 170
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 2 cut(s) 230, 268
RsaNI GTAC 2 cut(s) 229, 267
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 291, 445, 448
Sau3AI GATC 5 cut(s) 13, 133, 157, 324, 414
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 391
SetI ASST 9 cut(s) 51, 90, 144, 156, 171, 208, 268, 391, 481
SfcI CTRYAG 2 cut(s) 6, 331
Sfr274I CTCGAG 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 519
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 505
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 335, 466, 531
TaiI ACGT 1 cut(s) 144
TaqI TCGA 5 cut(s) 148, 171, 271, 280, 343
TasI AATT 1 cut(s) 519
TfiI GAWTC 2 cut(s) 22, 348
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 340, 457, 518
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 3 cut(s) 290, 444, 447
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 35, 438, 453
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 3 cut(s) 340, 457, 518
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 170
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.