Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023906

Physical Location & Seq

Genomic Coordinates Forward (+)

12361832 .. 12363493

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34015.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATTGGAATGAGAGAAATGCTAGAATTGACCGTAGTTTTAAAGGCTTCAAGCCAAAGAACCCAGCCAAATGGAATGAGAAAGATCGCCCAGGTGGTTGTGTTAGGAACACCCATCTTAACTGTAAGACGGACGAGTTTTTGAAGCTTTCCATGCTGAAACTTCCTAGAAGCGGTTCAGCAATTTCAATCAAGGGAATGTGGTTCGACCCTTGTCGAGACTACTGCTTGAAGAACTGCAAATGTCAAGCTTTTGCATTACCAGTAGGTCCGGCAACTTTGAGAAACAGTTCAGGTGGAACCAAGCAGCTCAGGATTGGGATCGGTTATGGTCAATGCCAGAGGAGGTATGTGATGAATTACTCTGAGTGTGGAAGCAACGCGTATTGCAATCCGATTACAAATCTCATATGCAACTACTTTAAAGGCTTCAAGCCAAAGAACCCAGCCAAATGGAATGAGAAAGATCGTCGGGGTGGTTGTGTTAGGGACACCCGTCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 DUF3660 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

168

Amino Acids

19.21

Weight (kDa)

9.77

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	42 - 87	2.3e-09	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34015
prunus_persica	Prupe.4G019300_v2.0.a1
rosa_rugosa	Rorug05G0430200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	383
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	5 cut(s)	52, 145, 189, 232, 433
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	3 cut(s)	148, 251, 310
AluI	AGCT	3 cut(s)	148, 251, 310
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	307
Asp700I	GAANNNNTTC	2 cut(s)	175, 289
AspS9I	GGNCC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	24, 168
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	93
BoxI	GACNNNNGTC	2 cut(s)	213, 495
Bpu10I	CCTNAGC	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	91
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	325, 357
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	2 cut(s)	64, 445
Bsh1236I	CGCG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	85, 321, 466
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	2 cut(s)	324, 358
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	3 cut(s)	85, 321, 466
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	35, 125, 290
BstDEI	CTNAG	2 cut(s)	311, 366
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	3 cut(s)	88, 324, 469
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	85, 321, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	93
BstPAI	GACNNNNGTC	2 cut(s)	213, 495
BstSCI	CCNGG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	319
BstXI	CCANNNNNNTGG	2 cut(s)	72, 453
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	48, 55, 68, 148, 251, 310, 429, 436, 449
CviKI_1	RGCY	9 cut(s)	48, 55, 68, 148, 251, 310, 429, 436, 449
DdeI	CTNAG	2 cut(s)	311, 366
DpnI	GATC	3 cut(s)	87, 323, 468
DpnII	GATC	3 cut(s)	85, 321, 466
DraI	TTTAAA	2 cut(s)	43, 424
Eco47I	GGWCC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	157
FaiI	YATR	5 cut(s)	155, 330, 351, 410, 412
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	2 cut(s)	24, 168
GluI	GCNGC	1 cut(s)	308
GsaI	CCCAGC	2 cut(s)	68, 449
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	1 cut(s)	157
HindIII	AAGCTT	2 cut(s)	146, 249
HpaII	CCGG	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	367, 396
Hpy188III	TCNNGA	2 cut(s)	218, 313
Hpy99I	CGWCG	1 cut(s)	474
HpyCH4III	ACNGT	3 cut(s)	35, 125, 290
HpyCH4V	TGCA	4 cut(s)	240, 257, 390, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	2 cut(s)	311, 366
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	85, 321, 466
LpnPI	CCDG	9 cut(s)	78, 78, 105, 276, 279, 285, 298, 353, 459
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	24, 168
MalI	GATC	3 cut(s)	87, 323, 468
MboI	GATC	3 cut(s)	85, 321, 466
MboII	GAAGA	1 cut(s)	244
MluCI	AATT	3 cut(s)	27, 183, 358
MluI	ACGCGT	1 cut(s)	381
MnlI	CCTC	2 cut(s)	336, 339
MroXI	GAANNNNTTC	2 cut(s)	175, 289
MseI	TTAA	4 cut(s)	42, 120, 423, 501
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeI	CATATG	1 cut(s)	410
NdeII	GATC	3 cut(s)	85, 321, 466
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	301
PdmI	GAANNNNTTC	2 cut(s)	175, 289
PkrI	GCNGC	1 cut(s)	309
PshAI	GACNNNNGTC	2 cut(s)	213, 495
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	64, 445
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	42, 120, 423, 501
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	3 cut(s)	85, 321, 466
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	7 cut(s)	97, 150, 253, 271, 298, 312, 350
SinI	GGWCC	1 cut(s)	269
Sse9I	AATT	3 cut(s)	27, 183, 358
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	2 cut(s)	24, 168
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	3 cut(s)	35, 125, 290
TaqI	TCGA	2 cut(s)	207, 217
TasI	AATT	3 cut(s)	27, 183, 358
Tru1I	TTAA	4 cut(s)	42, 120, 423, 501
Tru9I	TTAA	4 cut(s)	42, 120, 423, 501
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	269
XmnI	GAANNNNTTC	2 cut(s)	175, 289
XspI	CTAG	2 cut(s)	24, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.