Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0023906

Physical Location & Seq

Genomic Coordinates Forward (+)

892690 .. 893545

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G019300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAACGTTGTCCTTCTTGATCCATCACACCCAAGTTTTGAGACCAAATGTCCTGCTTTTGGATATGGGCAATCTTGTGATCAAAGAAGGAACCGAAAACAGCCAAACATTTTTCTGGCAGAGCTTTGATTATCCCACACACTTTCTGCTTCCGGATATGAAGCTTGGATGGAAGTTGAGCACAGATCACCATGGCTTCCCGGAGATTTTCCTTCGGGACAAACATGTTAAAAACTTTCAAACCGGGCCCTGGAATGGGATGATATTTAGTGGTGTGCCGGAAATGTGTGCTTCGAAGCATGGTGTCATTTCAACTTCGTTACGAAACAAGATGAGGTCTAATATTCAGGCTTGGCAATTACATGGGTTGAGAGCACAAATATGTGAAATATATTTCAGCATCCCCAAAAGAACCAATGTGACAGCTATGGAGAGTGTGGTCCCATTTGGTATTTGTGACACAAATGCTTCACCTGTGTGTAAATGTGCGAGGGGGTTTCAGCCTAAGAATTTGGAGGCTTGGAATTTGGGAAATGGGTTTGATGGGTGTGTGAGAAAACGAGAACTGAAATTTACGAAAGACAAATTCTTGAGGTTGAGGAGTGTGAAATTACCTAAGAGTGGGGGTGCATTTGTGGATGGGGACATGAGCCTTGAGGCATGTAAAGAGAAGTGTTTGGAGAACTGTACTTGCACTGCTTATTGTGACATGGAGATTTCAAACGGAGGACCCTCATGTCCATTAGCTCCCCAAACCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

255

Amino Acids

28.6

Weight (kDa)

8.58

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34015
prunus_persica	Prupe.4G019300_v2.0.a1
rosa_rugosa	Rorug05G0430200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	738
AccIII	TCCGGA	1 cut(s)	154
AclI	AACGTT	1 cut(s)	8
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	4 cut(s)	511, 526, 572, 587
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	5 cut(s)	61, 252, 257, 258, 623
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	242, 315, 723
AhdI	GACNNNNNGTC	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	251
AleI	CACNNNNGTG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	126, 166, 428, 749
AluI	AGCT	4 cut(s)	126, 166, 428, 749
Alw21I	GWGCWC	2 cut(s)	185, 379
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	1 cut(s)	248
ApaI	GGGCCC	1 cut(s)	252
ApoI	RAATTY	4 cut(s)	511, 526, 572, 587
AspS9I	GGNCC	4 cut(s)	248, 249, 442, 731
AsuC2I	CCSGG	2 cut(s)	203, 247
AsuHPI	GGTGA	2 cut(s)	182, 465
AsuII	TTCGAA	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	442, 731
BaeGI	GKGCMC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	185, 379
BccI	CCATC	4 cut(s)	33, 165, 539, 635
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	2 cut(s)	203, 247
BcoDI	GTCTC	1 cut(s)	37
Bme1390I	CCNGG	3 cut(s)	203, 247, 253
Bme18I	GGWCC	2 cut(s)	442, 731
BmeRI	GACNNNNNGTC	1 cut(s)	50
BmgT120I	GGNCC	4 cut(s)	248, 249, 442, 731
BmiI	GGNNCC	4 cut(s)	94, 250, 444, 733
BmrFI	CCNGG	3 cut(s)	203, 247, 253
BmsI	GCATC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	613, 677
BpuMI	CCSGG	2 cut(s)	203, 247
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	193, 251
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 252, 257, 258, 623
BseAI	TCCGGA	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	193, 251
BseGI	GGATG	4 cut(s)	176, 267, 402, 646
BseLI	CCNNNNNNNGG	5 cut(s)	61, 252, 257, 258, 623
BseRI	GAGGAG	1 cut(s)	616
BseSI	GKGCMC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	185, 379
BsiSI	CCGG	4 cut(s)	155, 203, 246, 281
BslFI	GGGAC	3 cut(s)	233, 428, 659
BslI	CCNNNNNNNGG	5 cut(s)	61, 252, 257, 258, 623
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	3 cut(s)	233, 428, 659
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	296
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	3 cut(s)	185, 252, 379
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	21, 81, 187
Bsp19I	CCATGG	1 cut(s)	193
BspANI	GGCC	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	94, 250, 444, 733
BspPI	GGATC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	193, 251
BssMI	GATC	3 cut(s)	21, 81, 187
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	507, 618
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	4 cut(s)	176, 267, 402, 646
BstKTI	GATC	3 cut(s)	24, 84, 190
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	21, 81, 187
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	2 cut(s)	230, 666
BstSCI	CCNGG	3 cut(s)	201, 245, 251
BstSLI	GKGCMC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	176, 267, 402, 646
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
Cfr13I	GGNCC	4 cut(s)	248, 249, 442, 731
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	9 cut(s)	194, 227, 302, 365, 649, 663, 712, 738, 762
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	2 cut(s)	507, 618
DpnI	GATC	3 cut(s)	23, 83, 189
DpnII	GATC	3 cut(s)	21, 81, 187
DrdI	GACNNNNNNGTC	1 cut(s)	738
DriI	GACNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	738
Eam1105I	GACNNNNNGTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	442, 731
EcoO109I	RGGNCCY	2 cut(s)	249, 731
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	9 cut(s)	197, 230, 305, 368, 652, 666, 715, 741, 765
FaqI	GGGAC	3 cut(s)	233, 428, 659
FatI	CATG	9 cut(s)	193, 226, 301, 364, 648, 662, 711, 737, 761
FbaI	TGATCA	1 cut(s)	81
FokI	GGATG	4 cut(s)	183, 274, 389, 653
FriOI	GRGCYC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	4 cut(s)	155, 203, 246, 281
Hin1II	CATG	9 cut(s)	197, 230, 305, 368, 652, 666, 715, 741, 765
HindIII	AAGCTT	1 cut(s)	164
HpaII	CCGG	4 cut(s)	155, 203, 246, 281
HphI	GGTGA	2 cut(s)	182, 465
Hpy188III	TCNNGA	4 cut(s)	19, 155, 218, 592
HpyAV	CCTTC	3 cut(s)	25, 83, 224
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	632, 696
HpyF3I	CTNAG	2 cut(s)	507, 618
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	9 cut(s)	197, 230, 305, 368, 652, 666, 715, 741, 765
Kpn2I	TCCGGA	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	21, 81, 187
LmnI	GCTCC	1 cut(s)	754
LweI	GCATC	1 cut(s)	411
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	4 cut(s)	321, 421, 458, 707
MalI	GATC	3 cut(s)	23, 83, 189
MboI	GATC	3 cut(s)	21, 81, 187
MhlI	GDGCHC	3 cut(s)	185, 252, 379
MluCI	AATT	6 cut(s)	359, 511, 526, 572, 587, 611
MnlI	CCTC	8 cut(s)	330, 486, 511, 588, 594, 652, 722, 745
MroI	TCCGGA	1 cut(s)	154
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	2 cut(s)	382, 478
MspI	CCGG	4 cut(s)	155, 203, 246, 281
MspR9I	CCNGG	3 cut(s)	203, 247, 253
MvaI	CCWGG	1 cut(s)	253
NciI	CCSGG	2 cut(s)	203, 247
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	21, 81, 187
NlaIII	CATG	9 cut(s)	197, 230, 305, 368, 652, 666, 715, 741, 765
NlaIV	GGNNCC	4 cut(s)	94, 250, 444, 733
NmuCI	GTSAC	3 cut(s)	421, 458, 707
NspI	RCATGY	2 cut(s)	230, 666
NspV	TTCGAA	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	478
PciI	ACATGT	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	731
PscI	ACATGT	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	94, 250, 444, 733
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	4 cut(s)	248, 249, 442, 731
PspPPI	RGGWCCY	1 cut(s)	731
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	2 cut(s)	382, 478
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	21, 81, 187
Sau96I	GGNCC	4 cut(s)	248, 249, 442, 731
ScrFI	CCNGG	3 cut(s)	203, 247, 253
SduI	GDGCHC	3 cut(s)	185, 252, 379
SetI	ASST	9 cut(s)	11, 128, 168, 341, 430, 478, 599, 619, 751
SfaNI	GCATC	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	296
SinI	GGWCC	2 cut(s)	442, 731
SmiMI	CAYNNNNRTG	2 cut(s)	382, 478
SmlI	CTYRAG	2 cut(s)	592, 656
SmoI	CTYRAG	2 cut(s)	592, 656
Sse9I	AATT	6 cut(s)	359, 511, 526, 572, 587, 611
SspI	AATATT	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	201, 245, 251
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	296
TasI	AATT	6 cut(s)	359, 511, 526, 572, 587, 611
TatI	WGTACW	1 cut(s)	689
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	3 cut(s)	421, 458, 707
Tsp45I	GTSAC	3 cut(s)	421, 458, 707
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	1 cut(s)	703
VpaK11BI	GGWCC	2 cut(s)	442, 731
XapI	RAATTY	4 cut(s)	511, 526, 572, 587
XceI	RCATGY	2 cut(s)	230, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.