AT1G47485

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17422432 .. 17423071
640 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47485.1

Sequence Viewer

Length: 276 bp
ATGGGAATGTCGAATAGGTCAGTTTCTACATCCATTTTTTTCCTTGCATTGGTGGTTTTGCATGGAATTCAGGACACAGAAGAGAGACATTTGAAAACTACTTCGTTAGAGATTGAGGGAATTTATAAAAAAACTGAGGCCGAGCATCCTAGCATTGTGGTCACATATACACGGCGTGGTGTCCTTCAGAAGGAGGTCATTGCCCACCCCACAGACTTTAGGCCAACAAATCCCGGAAACAGCCCAGGCGTTGGACACTCTAACGGGCGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

8.2

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47485
prunus_persica Prupe.1G440600_v2.0.a1
pyrus_communis pycom08g08740
rosa_laevigata RLG00000010730
rosa_roxburghii Rroxscaffold_7G00161110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 251
AcsI RAATTY 2 cut(s) 66, 120
AcuI CTGAAG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 49, 190, 251
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 2 cut(s) 138, 221
ApoI RAATTY 2 cut(s) 66, 120
AsuC2I CCSGG 1 cut(s) 234
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 150
Bme1390I CCNGG 2 cut(s) 234, 246
BmrFI CCNGG 2 cut(s) 234, 246
BmsI GCATC 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 190, 251
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 29, 145
BseLI CCNNNNNNNGG 3 cut(s) 49, 190, 251
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 140, 223
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 49, 190, 251
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 2 cut(s) 140, 223
BspANI GGCC 2 cut(s) 140, 223
BspCNI CTCAG 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 29, 145
BstMAI GTCTC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 232, 244
BsuRI GGCC 2 cut(s) 140, 223
BtsCI GGATG 2 cut(s) 29, 145
CviAII CATG 1 cut(s) 62
CviJI RGCY 3 cut(s) 140, 223, 243
CviKI_1 RGCY 3 cut(s) 140, 223, 243
DdeI CTNAG 1 cut(s) 135
DraIII CACNNNGTG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 63, 126, 166, 168
FatI CATG 1 cut(s) 61
FokI GGATG 2 cut(s) 16, 132
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 140, 223
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 65
HpaII CCGG 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 184, 194
HpyCH4V TGCA 2 cut(s) 47, 61
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 65
LpnPI CCDG 4 cut(s) 56, 231, 247, 258
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 160
MboII GAAGA 1 cut(s) 92
MluCI AATT 2 cut(s) 66, 120
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 3 cut(s) 109, 130, 187
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 234, 246
MvaI CCWGG 1 cut(s) 246
NciI CCSGG 1 cut(s) 234
NlaIII CATG 1 cut(s) 65
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 232
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 234, 246
SetI ASST 2 cut(s) 20, 198
SfaNI GCATC 1 cut(s) 154
Sse9I AATT 2 cut(s) 66, 120
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 232, 244
TaqI TCGA 1 cut(s) 11
TasI AATT 2 cut(s) 66, 120
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 66, 120
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.