Rroxscaffold_7G00161110

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
3942133 .. 3942477
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161110.1

Sequence Viewer

Length: 345 bp
ATGGCAGCCATTGTCAATAAGCTTCTGTTTTCCGGTGTTTTTCTTCTTTTCATAATTCTCTCTTATGAAGTCATTTCAACTGAAGAAAGGCTGTTGAAAACAACAGATGGAAACAATAGTCTGAATTACCATCTGCTGCGGCGGTGCCTGTTACAAGCTGCAGCAGATTCTGTACCAGTGCCACCCACAATAGGTGATGACAGTACTAGTAGTAGTACTCCTAGTATAGTCGGCAATGTTGCAAAAGGCGATGATTACAGACCCACAGAACCAGGTCACAGCCCTGGTGCTGGTCATGCTCATGGTCATTCTGTTGAACCAGCAACAGTAGAGCTAAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.11

Weight (kDa)

5.35

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47485
prunus_persica Prupe.1G440600_v2.0.a1
pyrus_communis pycom08g08740
rosa_laevigata RLG00000010730
rosa_roxburghii Rroxscaffold_7G00161110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AciI CCGC 2 cut(s) 139, 142
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 3 cut(s) 174, 205, 217
AfiI CCNNNNNNNGG 2 cut(s) 191, 290
AgsI TTSAA 3 cut(s) 78, 97, 317
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 2 cut(s) 271, 283
AluBI AGCT 3 cut(s) 22, 158, 334
AluI AGCT 3 cut(s) 22, 158, 334
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 5, 136, 158, 161
AsuHPI GGTGA 1 cut(s) 206
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 17, 123, 145, 173
BccI CCATC 2 cut(s) 101, 138
BciT130I CCWGG 2 cut(s) 273, 285
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 2 cut(s) 207, 222
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 5 cut(s) 6, 137, 140, 159, 162
BlsI GCNGC 5 cut(s) 7, 138, 141, 160, 163
BmcAI AGTACT 2 cut(s) 205, 217
Bme1390I CCNGG 2 cut(s) 273, 285
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 2 cut(s) 273, 285
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 290
Bse1I ACTGG 2 cut(s) 176, 340
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 273, 285
BseDI CCNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 191, 290
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 176, 340
BseXI GCAGC 4 cut(s) 17, 123, 145, 173
BshNI GGYRCC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 191, 290
BspACI CCGC 2 cut(s) 139, 142
BspLI GGNNCC 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 2 cut(s) 176, 340
BssECI CCNNGG 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 273, 285
Bst4CI ACNGT 2 cut(s) 203, 328
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 273, 285
BstSCI CCNGG 2 cut(s) 271, 283
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 17, 123, 145, 173
BtgZI GCGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 3 cut(s) 173, 204, 216
CviAII CATG 2 cut(s) 296, 302
CviJI RGCY 6 cut(s) 8, 22, 91, 158, 282, 334
CviKI_1 RGCY 6 cut(s) 8, 22, 91, 158, 282, 334
CviQI GTAC 3 cut(s) 173, 204, 216
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 271, 283
FaeI CATG 2 cut(s) 299, 305
FaiI YATR 5 cut(s) 53, 66, 227, 297, 303
FatI CATG 2 cut(s) 295, 301
Fnu4HI GCNGC 5 cut(s) 6, 137, 140, 159, 162
Fsp4HI GCNGC 5 cut(s) 6, 137, 140, 159, 162
FspBI CTAG 2 cut(s) 207, 222
GluI GCNGC 5 cut(s) 6, 137, 140, 159, 162
HapII CCGG 1 cut(s) 33
Hin1II CATG 2 cut(s) 299, 305
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 203, 328
HpyCH4V TGCA 2 cut(s) 161, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 299, 305
LpnPI CCDG 9 cut(s) 46, 161, 189, 258, 270, 276, 285, 297, 333
Lsp1109I GCAGC 4 cut(s) 17, 123, 145, 173
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 2 cut(s) 207, 222
MaeIII GTNAC 2 cut(s) 150, 275
MboII GAAGA 2 cut(s) 35, 95
MluCI AATT 2 cut(s) 54, 124
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 2 cut(s) 273, 285
MvaI CCWGG 2 cut(s) 273, 285
MwoI GCNNNNNNNGC 1 cut(s) 296
NlaIII CATG 2 cut(s) 299, 305
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 5 cut(s) 7, 138, 141, 160, 163
Psp6I CCWGG 2 cut(s) 271, 283
PspGI CCWGG 2 cut(s) 271, 283
PspN4I GGNNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 3 cut(s) 174, 205, 217
RsaNI GTAC 3 cut(s) 173, 204, 216
RseI CAYNNNNRTG 1 cut(s) 300
SatI GCNGC 5 cut(s) 6, 137, 140, 159, 162
ScaI AGTACT 2 cut(s) 205, 217
ScrFI CCNGG 2 cut(s) 273, 285
SetI ASST 5 cut(s) 24, 160, 196, 277, 336
SexAI ACCWGGT 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 300
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 2 cut(s) 54, 124
SsiI CCGC 2 cut(s) 139, 142
SspMI CTAG 2 cut(s) 207, 222
StyD4I CCNGG 2 cut(s) 271, 283
TaaI ACNGT 2 cut(s) 203, 328
TasI AATT 2 cut(s) 54, 124
TatI WGTACW 2 cut(s) 203, 215
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 4 cut(s) 5, 136, 158, 161
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 40, 81
TspRI CASTG 1 cut(s) 183
XspI CTAG 2 cut(s) 207, 222
ZrmI AGTACT 2 cut(s) 205, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.