Prupe.1G440600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0020856
Physical Location & Seq
Forward (+)
37431922 .. 37432476
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G440600.1

Sequence Viewer

Length: 276 bp
ATGGCCAATGGCAAGCTTATGTGCGCCAGTGTTTTTCTTCTTGTGTTAATTTTCTCTTATGGGATCATTTCAACTGAAGAAAGGCTGACGAGAACAGATCTTACAAACCAGGCAATATTATTACACCGCAAGGTGTTAGAAAATGAAGTGGCTGCAGGCTCTGCGCCACCAACGCTAACCTACGAGAGTGTTCCCGACGATAATTATCGACCCACAACACCAGGGCACAGTCCTGGCGCTGGCCATAACGCCGGCCATTCTGGTGGACCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.68

Weight (kDa)

5.72

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47485
prunus_persica Prupe.1G440600_v2.0.a1
pyrus_communis pycom08g08740
rosa_laevigata RLG00000010730
rosa_roxburghii Rroxscaffold_7G00161110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 3 cut(s) 3, 241, 253
AcuI CTGAAG 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 3 cut(s) 108, 220, 232
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
AlwI GGATC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 3 cut(s) 3, 241, 253
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 3 cut(s) 26, 166, 239
AspS9I GGNCC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 228
BalI TGGCCA 2 cut(s) 5, 243
BbvI GCAGC 1 cut(s) 139
BciT130I CCWGG 3 cut(s) 110, 222, 234
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 240
BglII AGATCT 1 cut(s) 97
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 110, 222, 234
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 110, 222, 234
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 3 cut(s) 110, 222, 234
BseDI CCNNGG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 3 cut(s) 5, 243, 255
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 3 cut(s) 5, 243, 255
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 63, 97
BspACI CCGC 1 cut(s) 127
BspANI GGCC 3 cut(s) 5, 243, 255
BspCNI CTCAG 1 cut(s) 262
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 63, 97
Bst2UI CCWGG 3 cut(s) 110, 222, 234
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 4 cut(s) 14, 157, 241, 253
BstDEI CTNAG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 3 cut(s) 26, 166, 239
BstKTI GATC 2 cut(s) 66, 100
BstMBI GATC 2 cut(s) 63, 97
BstMWI GCNNNNNNNGC 2 cut(s) 161, 172
BstNI CCWGG 3 cut(s) 110, 222, 234
BstSCI CCNGG 3 cut(s) 108, 220, 232
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 3 cut(s) 5, 243, 255
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 4 cut(s) 14, 157, 241, 253
CaiI CAGNNNCTG 1 cut(s) 161
CfoI GCGC 3 cut(s) 26, 166, 239
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 266
CviJI RGCY 7 cut(s) 5, 16, 85, 152, 159, 243, 255
CviKI_1 RGCY 7 cut(s) 5, 16, 85, 152, 159, 243, 255
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 65, 99
DpnII GATC 2 cut(s) 63, 97
EaeI YGGCCR 3 cut(s) 3, 241, 253
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 96
EcoRII CCWGG 3 cut(s) 108, 220, 232
FaiI YATR 3 cut(s) 20, 60, 246
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 3 cut(s) 25, 165, 238
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 5, 243, 255
HapII CCGG 1 cut(s) 252
HhaI GCGC 3 cut(s) 26, 166, 239
Hin6I GCGC 3 cut(s) 24, 164, 237
HinP1I GCGC 3 cut(s) 24, 164, 237
HindIII AAGCTT 1 cut(s) 14
HpaII CCGG 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 172
HpyF3I CTNAG 1 cut(s) 270
HspAI GCGC 3 cut(s) 24, 164, 237
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 63, 97
Lsp1109I GCAGC 1 cut(s) 139
MalI GATC 2 cut(s) 65, 99
MboI GATC 2 cut(s) 63, 97
MboII GAAGA 2 cut(s) 29, 89
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 2 cut(s) 5, 243
MluCI AATT 2 cut(s) 48, 202
MluNI TGGCCA 2 cut(s) 5, 243
Mox20I TGGCCA 2 cut(s) 5, 243
MroNI GCCGGC 1 cut(s) 251
MscI TGGCCA 2 cut(s) 5, 243
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 2 cut(s) 5, 243
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 3 cut(s) 110, 222, 234
MvaI CCWGG 3 cut(s) 110, 222, 234
MwoI GCNNNNNNNGC 2 cut(s) 161, 172
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 2 cut(s) 63, 97
NgoMIV GCCGGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 108, 220, 232
PspGI CCWGG 3 cut(s) 108, 220, 232
PspPI GGNCC 1 cut(s) 266
PsrI GAACNNNNNNTAC 2 cut(s) 85, 117
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 63, 97
Sau96I GGNCC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 110, 222, 234
SduI GDGCHC 1 cut(s) 228
SetI ASST 4 cut(s) 18, 135, 182, 271
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 2 cut(s) 48, 202
SsiI CCGC 1 cut(s) 127
SspI AATATT 1 cut(s) 117
StyD4I CCNGG 3 cut(s) 108, 220, 232
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 208
TasI AATT 2 cut(s) 48, 202
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.