Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0022076

Physical Location & Seq

Genomic Coordinates Forward (+)

17660752 .. 17661058

Gene Structure 307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47915.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATACTTGGCAAAATCTTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGGAATCTGCTAGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGGTGGTTGTTTATCCCAACAAAGAAGAAGCTTTTAAGTGGTTCACATCGATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001654 GO:0003006 GO:0003008 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0005911 GO:0005923 GO:0005929 GO:0006996 GO:0007010 GO:0007154 GO:0007155 GO:0007165 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007423 GO:0007568 GO:0007588 GO:0007610 GO:0007617 GO:0007618 GO:0007626 GO:0007632 GO:0008104 GO:0008150 GO:0008340 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0010259 GO:0015630 GO:0016020 GO:0016043 GO:0019098 GO:0019953 GO:0022008 GO:0022406 GO:0022412 GO:0022414 GO:0022607 GO:0022610 GO:0023041 GO:0023052 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030054 GO:0030154 GO:0030182 GO:0031514 GO:0032391 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034606 GO:0034607 GO:0034613 GO:0035178 GO:0035845 GO:0035869 GO:0036064 GO:0042461 GO:0042995 GO:0043005 GO:0043010 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0046530 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048522 GO:0048609 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051640 GO:0051641 GO:0051704 GO:0051716 GO:0060041 GO:0060179 GO:0060271 GO:0065007 GO:0070160 GO:0070727 GO:0070925 GO:0071840 GO:0097458 GO:0097546 GO:0097711 GO:0097730 GO:0097731 GO:0097733 GO:0098609 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0140056 GO:1901888 GO:1901890 GO:1903348 GO:1905515 GO:2000810

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1

Protein Analysis

73

Amino Acids

8.26

Weight (kDa)

7.89

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 47	1.6e-09	F-box domain
F-box-like	PF12937	10 - 43	2.7e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47915 AT3G12840
rosa_roxburghii	Rroxscaffold_7G00212870
rosa_samantha	Rh1AG436200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	18, 131
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BplI	GAGNNNNNCTC	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	117
BspDI	ATCGAT	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	212
BsuTUI	ATCGAT	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	212
CviJI	RGCY	2 cut(s)	89, 194
CviKI_1	RGCY	2 cut(s)	89, 194
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	18, 131
GluI	GCNGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	4 cut(s)	23, 124, 161, 214
Hpy166II	GTNNAC	2 cut(s)	142, 207
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	2 cut(s)	142, 207
LpnPI	CCDG	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	18, 131
MboII	GAAGA	1 cut(s)	200
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	108, 114, 158
MseI	TTAA	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	23, 124, 214
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	170
SetI	ASST	4 cut(s)	119, 136, 150, 196
SgeI	CNNG	7 cut(s)	30, 53, 65, 76, 124, 143, 149
Sse9I	AATT	1 cut(s)	34
SspMI	CTAG	2 cut(s)	18, 131
TaqI	TCGA	2 cut(s)	26, 212
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	3 cut(s)	23, 124, 214
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	18, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.