Rroxscaffold_7G00212870

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0022076
Physical Location & Seq
Reverse (-)
63401093 .. 63406970
5878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212870.1

Sequence Viewer

Length: 576 bp
ATGGTATATAAAGGTGTGGGGAATTTGGGTTCTTCTGGTTGCAGTCAAACTGGGATGGCAAGCCAAAAGAAGAAAAGTCGACACGCGAGGACTTTATCAAGTTCAAATGGCACATACATCAAATCCGACCCCTTCTCCCAAACTAGCAATCTAACTGCTCCTACAATCGCCACCAACACCAAATTCCGCTGCCCACTTCACTTTTATCTACCCCTGCAACGGTCGTCCTCCCGGACCCAACTAAGCCGGACGAAGGTAGCAAATCATACCACGTCCATGGAGGCTCCAACCAAGCGTAAAGATCCTTTCAAGTTACGCATCCTAGAAACAATTATTCGACGTCAAGGTGCGCTGCCTAGATGCGTCCGACGACGACATCCCCAAAGACGTATGCAAAGAGATTCACCAAAGTCCTGTTTGAAAATGGATATTGAGCTTGACAAACTCAGTAACTTACCAAGGGATGTTACGGAAAAGATTTTGTCAATTTTGCCAATAAAGGAGGCAGTGAGGACAAGTATATTATCGAGCGCGTGGAGGTACAAAATGGGCTATGCTTCCAGATCTTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

191

Amino Acids

21.62

Weight (kDa)

10.88

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 149 - 180 3.2e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47915 AT3G12840
rosa_roxburghii Rroxscaffold_7G00212870
rosa_samantha Rh1AG436200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 79
AccII CGCG 2 cut(s) 86, 533
AciI CCGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 2 cut(s) 22, 182
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 2 cut(s) 219, 253
AgsI TTSAA 3 cut(s) 105, 310, 421
AjiI CACGTC 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AloI GAACNNNNNNTCC 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
AlwI GGATC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 189, 352
ApoI RAATTY 2 cut(s) 22, 182
AspLEI GCGC 2 cut(s) 352, 533
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 396
AvaII GGWCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 176, 339
BccI CCATC 1 cut(s) 49
BcnI CCSGG 1 cut(s) 232
BfaI CTAG 3 cut(s) 144, 323, 357
BglII AGATCT 1 cut(s) 563
BisI GCNGC 2 cut(s) 190, 353
BlsI GCNGC 2 cut(s) 191, 354
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 236, 285
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 327, 350
BmuI ACTGGG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 276, 458
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 253
Bse1I ACTGG 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 276, 458
BseGI GGATG 4 cut(s) 60, 318, 376, 469
BseLI CCNNNNNNNGG 2 cut(s) 219, 253
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 176, 339
Bsh1236I CGCG 2 cut(s) 86, 533
Bsh1285I CGRYCG 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 232, 247
BslI CCNNNNNNNGG 2 cut(s) 219, 253
Bsp143I GATC 2 cut(s) 301, 563
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 459
BspFNI CGCG 2 cut(s) 86, 533
BspLI GGNNCC 2 cut(s) 236, 285
BspPI GGATC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 276, 458
BssMI GATC 2 cut(s) 301, 563
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 276, 458
Bst4CI ACNGT 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 242, 446
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 60, 318, 376, 469
BstFNI CGCG 2 cut(s) 86, 533
BstHHI GCGC 2 cut(s) 352, 533
BstKTI GATC 2 cut(s) 304, 566
BstMBI GATC 2 cut(s) 301, 563
BstMCI CGRYCG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 230
BstUI CGCG 2 cut(s) 86, 533
BstV1I GCAGC 2 cut(s) 176, 339
BstX2I RGATCY 2 cut(s) 301, 563
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 301, 563
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 273
BtsCI GGATG 4 cut(s) 60, 318, 376, 469
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 2 cut(s) 352, 533
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 541
CviAII CATG 1 cut(s) 277
CviJI RGCY 5 cut(s) 63, 246, 284, 436, 552
CviKI_1 RGCY 5 cut(s) 63, 246, 284, 436, 552
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 242, 446
DpnI GATC 2 cut(s) 303, 565
DpnII GATC 2 cut(s) 301, 563
Eco130I CCWWGG 2 cut(s) 276, 458
Eco47I GGWCC 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 276, 458
ErhI CCWWGG 2 cut(s) 276, 458
FaeI CATG 1 cut(s) 280
FaiI YATR 8 cut(s) 7, 9, 115, 267, 278, 392, 521, 555
FatI CATG 1 cut(s) 276
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 190, 353
FokI GGATG 4 cut(s) 67, 305, 363, 476
Fsp4HI GCNGC 2 cut(s) 190, 353
FspBI CTAG 3 cut(s) 144, 323, 357
GlaI GCGC 2 cut(s) 351, 532
GluI GCNGC 2 cut(s) 190, 353
HapII CCGG 2 cut(s) 232, 247
HgaI GACGC 1 cut(s) 352
HhaI GCGC 2 cut(s) 352, 533
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 2 cut(s) 350, 531
HinP1I GCGC 2 cut(s) 350, 531
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 1 cut(s) 401
HpaII CCGG 2 cut(s) 232, 247
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 127, 368
Hpy188III TCNNGA 1 cut(s) 561
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 3 cut(s) 342, 372, 375
HpyAV CCTTC 2 cut(s) 142, 247
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 3 cut(s) 272, 340, 388
HpyCH4V TGCA 3 cut(s) 42, 217, 394
HpyF3I CTNAG 2 cut(s) 242, 446
HpySE526I ACGT 3 cut(s) 272, 340, 388
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 2 cut(s) 350, 531
Kzo9I GATC 2 cut(s) 301, 563
LmnI GCTCC 2 cut(s) 163, 289
LpnPI CCDG 6 cut(s) 21, 36, 227, 245, 260, 427
Lsp1109I GCAGC 2 cut(s) 176, 339
LweI GCATC 2 cut(s) 327, 350
MaeI CTAG 3 cut(s) 144, 323, 357
MaeII ACGT 3 cut(s) 272, 340, 388
MaeIII GTNAC 3 cut(s) 312, 449, 466
MalI GATC 2 cut(s) 303, 565
MboI GATC 2 cut(s) 301, 563
MboII GAAGA 2 cut(s) 24, 82
MflI RGATCY 2 cut(s) 301, 563
MluCI AATT 4 cut(s) 22, 182, 330, 486
MmeI TCCRAC 3 cut(s) 150, 311, 391
MnlI CCTC 6 cut(s) 81, 238, 274, 496, 504, 531
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 2 cut(s) 232, 247
MspR9I CCNGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 86, 533
NciI CCSGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 301, 563
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 236, 285
PfeI GAWTC 1 cut(s) 401
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 2 cut(s) 191, 354
PspN4I GGNNCC 2 cut(s) 236, 285
PspPI GGNCC 1 cut(s) 234
PsuI RGATCY 2 cut(s) 301, 563
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 275
SalI GTCGAC 1 cut(s) 78
SatI GCNGC 2 cut(s) 190, 353
Sau3AI GATC 2 cut(s) 301, 563
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 232
SetI ASST 8 cut(s) 16, 258, 275, 343, 349, 391, 438, 542
SfaNI GCATC 2 cut(s) 327, 350
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 4 cut(s) 22, 182, 330, 486
SsiI CCGC 1 cut(s) 187
SspMI CTAG 3 cut(s) 144, 323, 357
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 276, 458
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 3 cut(s) 275, 343, 391
TaqI TCGA 3 cut(s) 79, 337, 527
TasI AATT 4 cut(s) 22, 182, 330, 486
TfiI GAWTC 1 cut(s) 401
TscAI CASTG 1 cut(s) 513
TseI GCWGC 2 cut(s) 189, 352
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 2 cut(s) 22, 182
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 3 cut(s) 144, 323, 357
ZraI GACGTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.