AT1G50460

Belongs to the hexokinase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18693644 .. 18697709
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50460.1

Sequence Viewer

Length: 1497 bp
ATGGGGAAAGTGGCGGTTGCGTTTGCGGCGGTTGCTGTTGTTGCGGCTTGTTCTGTTGCCGCGGTGATGGTTGGGAGGAGGATGAAGAGTCGGAGGAAATGGAGGACTGTTGTTGAGATTTTGAAAGAGTTGGAGGATGATTGTGATACTCCGGTTGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCCGTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGTACTTATTATGCACTTCACCTTGGAGGCACTTATTTTAGGATTTTAAGGGTTCTTCTGGGTGATCAAAGGTCTTATCTAGATGTTCAAGATGTTGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTTTTCAACTTTCTCGCCTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCGATTCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTTCTATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGGCAAGATATAGCTGAATGTCTACAAGGAGCTCTGAACAGAAGAGGCCTAGATATGCATGTTGCGGCTCTTGTGAATGATACTGTTGGAGCCTTGTCGCTTGGATATTATCACGATCCAGATACGGTTGTTGCGGTTGTATTTGGAACAGGTAGTAATGCATGTTACTTGGAAAGAACCGATGCCATAATCAAGTGTCAGGGTCTGCTTACAACTTCTGGAAGCATGGTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGTGACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTGGACCCATCTCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATACATGAAGATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACATAGGGGTATCAGATGTACCACTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGATGTGGTTACACGAAGAGCAGGGAGGCTTGCAGCAGCAGGAATAGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGCGGGGGAATCACGAGCGGGAGAAGCAGAAGTGAAATCCAAATGCAGAAAAGAACAGTTGTTGCGGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGCTCTCGTAGAGATACTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGATGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001678 GO:0003674 GO:0003824 GO:0004340 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008865 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016021 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0019867 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032787 GO:0033500 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042592 GO:0042593 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050896 GO:0051156 GO:0051186 GO:0051188 GO:0055082 GO:0055086 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080147 GO:0090407 GO:0090558 GO:0090627 GO:0098573 GO:0098588 GO:0098805 GO:0099402 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1905392
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

54.59

Weight (kDa)

5.55

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hexokinase_1 PF00349 41 - 236 2.1e-64 Hexokinase
Hexokinase_2 PF03727 246 - 494 3.1e-75 Hexokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018755)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1284
AccI GTMKAC 1 cut(s) 628
AccII CGCG 1 cut(s) 62
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 856, 1066
AcuI CTGAAG 3 cut(s) 237, 540, 1178
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 3 cut(s) 286, 1152, 1349
AfiI CCNNNNNNNGG 3 cut(s) 273, 456, 1368
AgsI TTSAA 8 cut(s) 124, 371, 380, 433, 467, 918, 1129, 1246
AhlI ACTAGT 1 cut(s) 1171
AluBI AGCT 4 cut(s) 232, 620, 638, 1388
AluI AGCT 4 cut(s) 232, 620, 638, 1388
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 1 cut(s) 1078
AlwI GGATC 1 cut(s) 716
AlwNI CAGNNNCTG 1 cut(s) 811
AoxI GGCC 3 cut(s) 186, 652, 1255
ApeKI GCWGC 2 cut(s) 1220, 1223
ApoI RAATTY 2 cut(s) 856, 1066
Asp700I GAANNNNTTC 1 cut(s) 1066
AspS9I GGNCC 4 cut(s) 483, 576, 864, 1022
AsuHPI GGTGA 6 cut(s) 76, 293, 356, 980, 1174, 1189
AvaII GGWCC 4 cut(s) 483, 576, 864, 1022
BaeI ACNNNNGTAYC 4 cut(s) 138, 171, 720, 753
BanII GRGCYC 1 cut(s) 640
BauI CACGAG 1 cut(s) 1279
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 2 cut(s) 1232, 1235
BccI CCATC 4 cut(s) 61, 1034, 1256, 1442
BceAI ACGGC 1 cut(s) 173
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 1078
BcuI ACTAGT 1 cut(s) 1171
BfaI CTAG 6 cut(s) 362, 656, 879, 1172, 1403, 1455
BisI GCNGC 6 cut(s) 27, 45, 60, 672, 1221, 1224
BlsI GCNGC 6 cut(s) 28, 46, 61, 673, 1222, 1225
Bme18I GGWCC 4 cut(s) 483, 576, 864, 1022
BmgT120I GGNCC 4 cut(s) 483, 576, 864, 1022
BmiI GGNNCC 3 cut(s) 484, 697, 1024
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 4 cut(s) 169, 186, 778, 895
BmuI ACTGGG 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 975, 1007
BsaAI YACGTR 1 cut(s) 1426
BsaJI CCNNGG 5 cut(s) 60, 189, 304, 450, 1440
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 1398, 1428
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 456, 1368
Bse1I ACTGG 1 cut(s) 274
BseDI CCNNGG 5 cut(s) 60, 189, 304, 450, 1440
BseGI GGATG 3 cut(s) 87, 142, 910
BseLI CCNNNNNNNGG 3 cut(s) 273, 456, 1368
BseMII CTCAG 3 cut(s) 1035, 1089, 1092
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 3 cut(s) 91, 233, 1463
BseXI GCAGC 2 cut(s) 1232, 1235
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 3 cut(s) 188, 654, 1257
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 273, 456, 1368
BsmAI GTCTC 1 cut(s) 1078
BsnI GGCC 3 cut(s) 188, 654, 1257
Bsp1286I GDGCHC 1 cut(s) 640
Bsp1407I TGTACA 1 cut(s) 1347
Bsp143I GATC 2 cut(s) 346, 721
Bsp19I CCATGG 1 cut(s) 1440
BspANI GGCC 3 cut(s) 188, 654, 1257
BspCNI CTCAG 3 cut(s) 1036, 1088, 1093
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 1493
BspLI GGNNCC 3 cut(s) 484, 697, 1024
BspPI GGATC 1 cut(s) 716
BspQI GCTCTTC 1 cut(s) 1198
BsrBI CCGCTC 1 cut(s) 1284
BsrGI TGTACA 1 cut(s) 1347
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 5 cut(s) 60, 189, 304, 450, 1440
BssMI GATC 2 cut(s) 346, 721
BssSI CACGAG 1 cut(s) 1279
BssT1I CCWWGG 3 cut(s) 304, 450, 1440
Bst2BI CACGAG 1 cut(s) 1279
Bst4CI ACNGT 5 cut(s) 109, 691, 733, 1324, 1491
Bst6I CTCTTC 3 cut(s) 80, 643, 1198
BstAUI TGTACA 1 cut(s) 1347
BstBAI YACGTR 1 cut(s) 1426
BstC8I GCNNGC 2 cut(s) 201, 1218
BstDEI CTNAG 5 cut(s) 228, 1044, 1058, 1075, 1101
BstDSI CCRYGG 3 cut(s) 60, 189, 1440
BstENI CCTNNNNNAGG 1 cut(s) 454
BstF5I GGATG 3 cut(s) 87, 142, 910
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 2 cut(s) 349, 724
BstMAI GTCTC 1 cut(s) 1078
BstMBI GATC 2 cut(s) 346, 721
BstMWI GCNNNNNNNGC 7 cut(s) 26, 32, 41, 209, 238, 1232, 1290
BstNSI RCATGY 3 cut(s) 668, 771, 1000
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 1232, 1235
BsuRI GGCC 3 cut(s) 188, 654, 1257
BtgI CCRYGG 3 cut(s) 60, 189, 1440
BtgZI GCGATG 1 cut(s) 1203
BtsCI GGATG 3 cut(s) 87, 142, 910
BtsIMutI CAGTG 2 cut(s) 267, 1154
Cac8I GCNNGC 2 cut(s) 201, 1218
CaiI CAGNNNCTG 1 cut(s) 811
CciI TCATGA 1 cut(s) 1493
Cfr13I GGNCC 4 cut(s) 483, 576, 864, 1022
Cfr42I CCGCGG 1 cut(s) 63
Csp6I GTAC 3 cut(s) 285, 1151, 1348
CviQI GTAC 3 cut(s) 285, 1151, 1348
DdeI CTNAG 5 cut(s) 228, 1044, 1058, 1075, 1101
DpnI GATC 2 cut(s) 348, 723
DpnII GATC 2 cut(s) 346, 721
DraIII CACNNNGTG 1 cut(s) 497
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 3 cut(s) 80, 643, 1198
EarI CTCTTC 3 cut(s) 80, 643, 1198
Ecl136II GAGCTC 1 cut(s) 638
Eco130I CCWWGG 3 cut(s) 304, 450, 1440
Eco147I AGGCCT 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 640
Eco32I GATATC 2 cut(s) 951, 1015
Eco47I GGWCC 4 cut(s) 483, 576, 864, 1022
Eco53kI GAGCTC 1 cut(s) 638
Eco57I CTGAAG 3 cut(s) 237, 540, 1178
EcoICRI GAGCTC 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 454
EcoRV GATATC 2 cut(s) 951, 1015
EcoT14I CCWWGG 3 cut(s) 304, 450, 1440
EcoT22I ATGCAT 2 cut(s) 666, 769
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 3 cut(s) 304, 450, 1440
FauI CCCGC 2 cut(s) 1262, 1277
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 6 cut(s) 27, 45, 60, 672, 1221, 1224
FokI GGATG 3 cut(s) 94, 149, 917
FriOI GRGCYC 1 cut(s) 640
Fsp4HI GCNGC 6 cut(s) 27, 45, 60, 672, 1221, 1224
FspBI CTAG 6 cut(s) 362, 656, 879, 1172, 1403, 1455
GluI GCNGC 6 cut(s) 27, 45, 60, 672, 1221, 1224
HaeIII GGCC 3 cut(s) 188, 654, 1257
HapII CCGG 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 7 cut(s) 88, 488, 1007, 1122, 1239, 1275, 1417
HpaII CCGG 1 cut(s) 152
HphI GGTGA 6 cut(s) 76, 293, 356, 980, 1174, 1189
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 8 cut(s) 93, 217, 487, 642, 1003, 1012, 1045, 1147
Hpy8I GTNNAC 1 cut(s) 629
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 5 cut(s) 212, 405, 498, 1153, 1331
HpyCH4III ACNGT 5 cut(s) 109, 691, 733, 1324, 1491
HpyCH4IV ACGT 3 cut(s) 521, 1053, 1425
HpyCH4V TGCA 9 cut(s) 199, 296, 515, 664, 767, 908, 923, 1220, 1312
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 32, 41, 209, 238, 1232, 1290
HpyF3I CTNAG 5 cut(s) 228, 1044, 1058, 1075, 1101
HpySE526I ACGT 3 cut(s) 521, 1053, 1425
Ksp22I TGATCA 1 cut(s) 346
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 2 cut(s) 346, 721
LguI GCTCTTC 1 cut(s) 1198
LmnI GCTCC 3 cut(s) 246, 635, 695
Lsp1109I GCAGC 2 cut(s) 1232, 1235
LweI GCATC 4 cut(s) 169, 186, 778, 895
MaeI CTAG 6 cut(s) 362, 656, 879, 1172, 1403, 1455
MaeII ACGT 3 cut(s) 521, 1053, 1425
MaeIII GTNAC 4 cut(s) 770, 968, 1104, 1195
MalI GATC 2 cut(s) 348, 723
MbiI CCGCTC 1 cut(s) 1284
MboI GATC 2 cut(s) 346, 721
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 5 cut(s) 567, 856, 987, 1066, 1354
MlyI GAGTC 2 cut(s) 97, 1426
MmeI TCCRAC 3 cut(s) 71, 111, 673
Mph1103I ATGCAT 2 cut(s) 666, 769
MroXI GAANNNNTTC 1 cut(s) 1066
MseI TTAA 4 cut(s) 234, 329, 570, 1434
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 7 cut(s) 26, 32, 41, 209, 238, 1232, 1290
NcoI CCATGG 1 cut(s) 1440
NdeII GATC 2 cut(s) 346, 721
NlaIV GGNNCC 3 cut(s) 484, 697, 1024
NmeAIII GCCGAG 1 cut(s) 1283
NmuCI GTSAC 1 cut(s) 968
NsiI ATGCAT 2 cut(s) 666, 769
NspI RCATGY 3 cut(s) 668, 771, 1000
PagI TCATGA 1 cut(s) 1493
PceI AGGCCT 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 1198
PdmI GAANNNNTTC 1 cut(s) 1066
PfeI GAWTC 5 cut(s) 488, 1007, 1122, 1239, 1275
PkrI GCNGC 6 cut(s) 28, 46, 61, 673, 1222, 1225
PleI GAGTC 2 cut(s) 96, 1425
PpsI GAGTC 2 cut(s) 96, 1425
Ppu21I YACGTR 1 cut(s) 1426
Psp124BI GAGCTC 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 484, 697, 1024
PspPI GGNCC 4 cut(s) 483, 576, 864, 1022
PstNI CAGNNNCTG 1 cut(s) 811
RsaI GTAC 3 cut(s) 286, 1152, 1349
RsaNI GTAC 3 cut(s) 285, 1151, 1348
RseI CAYNNNNRTG 1 cut(s) 1089
SacI GAGCTC 1 cut(s) 640
SacII CCGCGG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 1198
SaqAI TTAA 4 cut(s) 234, 329, 570, 1434
SatI GCNGC 6 cut(s) 27, 45, 60, 672, 1221, 1224
Sau3AI GATC 2 cut(s) 346, 721
Sau96I GGNCC 4 cut(s) 483, 576, 864, 1022
SchI GAGTC 2 cut(s) 97, 1426
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 4 cut(s) 169, 186, 778, 895
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 4 cut(s) 483, 576, 864, 1022
SmiMI CAYNNNNRTG 1 cut(s) 1089
SpeI ACTAGT 1 cut(s) 1171
Sse9I AATT 5 cut(s) 567, 856, 987, 1066, 1354
SseBI AGGCCT 1 cut(s) 654
SspMI CTAG 6 cut(s) 362, 656, 879, 1172, 1403, 1455
SstI GAGCTC 1 cut(s) 640
StuI AGGCCT 1 cut(s) 654
StyI CCWWGG 3 cut(s) 304, 450, 1440
TaaI ACNGT 5 cut(s) 109, 691, 733, 1324, 1491
TaiI ACGT 3 cut(s) 524, 1056, 1428
TaqI TCGA 1 cut(s) 255
TasI AATT 5 cut(s) 567, 856, 987, 1066, 1354
TatI WGTACW 1 cut(s) 1347
TauI GCSGC 4 cut(s) 29, 47, 62, 674
TfiI GAWTC 5 cut(s) 488, 1007, 1122, 1239, 1275
Tru1I TTAA 4 cut(s) 234, 329, 570, 1434
Tru9I TTAA 4 cut(s) 234, 329, 570, 1434
TscAI CASTG 2 cut(s) 274, 1161
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 2 cut(s) 1220, 1223
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 4 cut(s) 98, 422, 1101, 1367
TspRI CASTG 2 cut(s) 274, 1161
VpaK11BI GGWCC 4 cut(s) 483, 576, 864, 1022
XagI CCTNNNNNAGG 1 cut(s) 454
XapI RAATTY 2 cut(s) 856, 1066
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 3 cut(s) 668, 771, 1000
XmiI GTMKAC 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 1066
XspI CTAG 6 cut(s) 362, 656, 879, 1172, 1403, 1455
Zsp2I ATGCAT 2 cut(s) 666, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.