AT1G53708

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017487
Physical Location & Seq
Forward (+)
20052393 .. 20053195
803 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53708.1

Sequence Viewer

Length: 330 bp
ATGGCTGAGTTCAAGAGTAAGTTAAACAAAGGTCACGCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTTCGTCGTTGTGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTCTCCTTTGGCTGCTTGGCAAAATCCTTTCACAAGAAACTTGACTCTCTCTTCTGATATATTCTGGTGCAAAACCCTTTTACAAGCCTACAAGACAGAGAGAGAGAGAACAAGAGATTTATCCGCCAAGCGAGCCGGAGTTTTTACTGTGTCTGAGACAGAGACAGTGGAGATGCTAATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

109

Amino Acids

12.6

Weight (kDa)

9.27

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 23 - 41 4.4e-09 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17235 AT1G53708 AT3G14362
malus_domestica MD09G1171200.v1.1
prunus_persica Prupe.3G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148241
rosa_rugosa Rorug02G0405000
rosa_samantha Rh2AG463500 Rh2BG476600 Rh2CG450300 Rh2DG485300
rosa_wichuraiana Rw2G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 3 cut(s) 89, 293, 299
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcoDI GTCTC 3 cut(s) 89, 293, 299
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmsI GCATC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BsaJI CCNNGG 2 cut(s) 60, 133
BseDI CCNNGG 2 cut(s) 60, 133
BseGI GGATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 279
BsmAI GTCTC 3 cut(s) 89, 293, 299
BsmBI CGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 82
BspACI CCGC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 60, 133
BssT1I CCWWGG 2 cut(s) 60, 133
Bst4CI ACNGT 2 cut(s) 292, 310
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 6, 297
BstF5I GGATG 1 cut(s) 129
BstMAI GTCTC 3 cut(s) 89, 293, 299
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 112
CviJI RGCY 5 cut(s) 5, 80, 155, 230, 278
CviKI_1 RGCY 5 cut(s) 5, 80, 155, 230, 278
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 6, 297
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 60, 133
Eco24I GRGCYC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 80
EcoT14I CCWWGG 2 cut(s) 60, 133
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 60, 133
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 115
FaiI YATR 2 cut(s) 113, 203
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HapII CCGG 1 cut(s) 279
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 143, 187
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 199, 298
Hpy188III TCNNGA 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 292, 310
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 6, 297
Hsp92II CATG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 109, 193, 292
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 32
MboII GAAGA 2 cut(s) 86, 186
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 1 cut(s) 321
MlyI GAGTC 2 cut(s) 137, 181
MseI TTAA 2 cut(s) 23, 328
MspI CCGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 275
NlaIII CATG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 137, 181
PpsI GAGTC 2 cut(s) 137, 181
Psp124BI GAGCTC 1 cut(s) 82
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 23, 328
SatI GCNGC 1 cut(s) 156
SchI GAGTC 2 cut(s) 137, 181
SduI GDGCHC 1 cut(s) 82
SetI ASST 2 cut(s) 34, 82
SfaNI GCATC 1 cut(s) 306
Sse9I AATT 1 cut(s) 321
SsiI CCGC 1 cut(s) 267
SstI GAGCTC 1 cut(s) 82
StyI CCWWGG 2 cut(s) 60, 133
TaaI ACNGT 2 cut(s) 292, 310
TasI AATT 1 cut(s) 321
Tru1I TTAA 2 cut(s) 23, 328
Tru9I TTAA 2 cut(s) 23, 328
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 32
TspRI CASTG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.