MD09G1171200.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017487
Physical Location & Seq
Reverse (-)
14441348 .. 14441533
186 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1171200.v1.1.491

Sequence Viewer

Length: 186 bp
ATGGATATGGTTCAAGTACAATGCAACCAGGGTGGATCAGCCACAGCCAAGGCTCACTCGAAGCGAACCGGGAACAGTTTTAGCCGGAAATGCGCTGCCTTGGTGAAGGAGCAACGTGCCCGTATTTACATCCTACGCCGCTGCGCCACCATGCTCCTTTGCTGGTACATCCAAGGAGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

62

Amino Acids

6.88

Weight (kDa)

9.62

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 36 - 54 8.2e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17235 AT1G53708 AT3G14362
malus_domestica MD09G1171200.v1.1
prunus_persica Prupe.3G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148241
rosa_rugosa Rorug02G0405000
rosa_samantha Rh2AG463500 Rh2BG476600 Rh2CG450300 Rh2DG485300
rosa_wichuraiana Rw2G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 43
AfaI GTAC 2 cut(s) 18, 167
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 27
AlwI GGATC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 95, 141
AspLEI GCGC 2 cut(s) 95, 146
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 82, 128
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 184
BisI GCNGC 3 cut(s) 96, 139, 142
BlsI GCNGC 3 cut(s) 97, 140, 143
Bme1390I CCNGG 2 cut(s) 29, 70
BmrFI CCNGG 2 cut(s) 29, 70
BpuMI CCSGG 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 28, 48, 99, 172
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 4 cut(s) 28, 48, 99, 172
BseGI GGATG 2 cut(s) 129, 168
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 2 cut(s) 82, 128
BsiSI CCGG 2 cut(s) 69, 85
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 28, 48, 99, 172
BssMI GATC 1 cut(s) 35
BssT1I CCWWGG 3 cut(s) 48, 99, 172
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 77
BstF5I GGATG 2 cut(s) 129, 168
BstHHI GCGC 2 cut(s) 95, 146
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 68
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 82, 128
BtsCI GGATG 2 cut(s) 129, 168
CfoI GCGC 2 cut(s) 95, 146
Csp6I GTAC 2 cut(s) 17, 166
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 1 cut(s) 151
CviJI RGCY 4 cut(s) 41, 47, 53, 84
CviKI_1 RGCY 4 cut(s) 41, 47, 53, 84
CviQI GTAC 2 cut(s) 17, 166
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eco130I CCWWGG 3 cut(s) 48, 99, 172
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 3 cut(s) 48, 99, 172
ErhI CCWWGG 3 cut(s) 48, 99, 172
FaeI CATG 1 cut(s) 154
FaiI YATR 2 cut(s) 8, 152
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 96, 139, 142
FokI GGATG 2 cut(s) 116, 155
Fsp4HI GCNGC 3 cut(s) 96, 139, 142
FspBI CTAG 1 cut(s) 184
GlaI GCGC 2 cut(s) 94, 145
GluI GCNGC 3 cut(s) 96, 139, 142
HapII CCGG 2 cut(s) 69, 85
HhaI GCGC 2 cut(s) 95, 146
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 2 cut(s) 93, 144
HinP1I GCGC 2 cut(s) 93, 144
HpaII CCGG 2 cut(s) 69, 85
HphI GGTGA 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 2 cut(s) 93, 144
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 109, 159
LpnPI CCDG 5 cut(s) 14, 41, 82, 98, 148
Lsp1109I GCAGC 2 cut(s) 82, 128
MaeI CTAG 1 cut(s) 184
MaeII ACGT 1 cut(s) 115
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 2 cut(s) 69, 85
MspR9I CCNGG 2 cut(s) 29, 70
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 35
NlaIII CATG 1 cut(s) 154
PkrI GCNGC 3 cut(s) 97, 140, 143
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
RsaI GTAC 2 cut(s) 18, 167
RsaNI GTAC 2 cut(s) 17, 166
SatI GCNGC 3 cut(s) 96, 139, 142
Sau3AI GATC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 29, 70
SduI GDGCHC 1 cut(s) 121
SetI ASST 1 cut(s) 118
SsiI CCGC 1 cut(s) 139
SspMI CTAG 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 27, 68
StyI CCWWGG 3 cut(s) 48, 99, 172
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 59
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 141
TseI GCWGC 2 cut(s) 95, 141
XspI CTAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.