AT1G63160

replication factor C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015060
Physical Location & Seq
Reverse (-)
23421834 .. 23423914
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63160.1

Sequence Viewer

Length: 1002 bp
ATGGCGTCTTCTTCATCAACCTCTACCGGTGACGGATACAATGAACCATGGGTGGAGAAATACAGGCCGAGCAAAGTAGTCGATATCGTTGGAAACGAAGACGCCGTCTCCAGACTTCAAGTCATTGCTCGCGACGGCAACATGCCTAATCTTATCCTTTCCGGTCCTCCTGGAACAGGTAAAACCACAAGCATTTTGGCTCTTGCTCATGAGCTCCTTGGCACGAATTACAAGGAGGCTGTTCTGGAGTTGAATGCATCTGATGATAGGGGTATTGATGTTGTAAGGAACAAAATTAAGATGTTTGCGCAGAAGAAAGTAACACTTCCTCCAGGGCGTCATAAGGTTGTTATCCTAGATGAAGCTGACAGTATGACATCTGGAGCACAACAAGCATTGAGGAGAACGATTGAAATCTATTCGAACTCTACGCGGTTTGCACTTGCTTGTAATACATCAGCCAAGATTATTGAGCCCATTCAGAGTAGATGTGCCTTAGTTCGATTCTCTAGATTATCTGATCAGCAGATACTAGGCCGTCTCTTGGTGGTGGTTGCAGCAGAGAAAGTTCCGTATGTGCCTGAAGGCCTTGAGGCGATAATCTTTACAGCTGATGGTGACATGAGGCAAGCTCTGAACAACTTGCAAGCCACATTCAGCGGGTTTTCGTTTGTCAACCAAGAAAACGTCTTCAAGGTCTGTGACCAGCCTCACCCGCTTCATGTCAAGAACATTGTTCGCAATGTGTTGGAAAGTAAGTTTGACATCGCCTGTGACGGCTTAAAGCAGCTCTATGATTTGGGCTACTCTCCAACCGACATTATCACAACGCTTTTCCGTATAATAAAGAATTACGATATGGCTGAGTATCTGAAACTTGAGTTCATGAAGGAAACTGGATTTGCGCATATGAGAATCTGTGATGGAGTTGGATCTTATCTTCAGCTATGTGGTCTTCTGGCTAAGTTATCCATTGTTCGTGAAACAGCGAAAGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000723 GO:0000731 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0030554 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033260 GO:0033554 GO:0033683 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097367 GO:1900262 GO:1900264 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000112 GO:2000278 GO:2000573
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA Rep_fac_C

Protein Analysis

333

Amino Acids

36.75

Weight (kDa)

7.59

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad17 PF03215 13 - 81 8.3e-06 Rad17 P-loop domain
nSTAND_NTPase5 PF25199 35 - 153 9e-07 Novel STAND NTPase 5
AAA_14 PF13173 50 - 149 1.5e-06 AAA domain
AAA PF00004 51 - 168 2.2e-13 ATPase family associated with various cellular activities (AAA)
DNA_pol3_delta2 PF13177 91 - 172 9.9e-09 DNA polymerase III, delta subunit
Rep_fac_C PF08542 237 - 322 9.6e-24 Replication factor C C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015060)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63160
fragaria_vesca FvH4_5g01730 FvH4_5g01730
malus_domestica MD04G1065200.v1.1
prunus_persica Prupe.8G039600_v2.0.a1
pyrus_communis pycom04g05880
rosa_chinensis RchiOBHm_Chr7g0198991
rosa_laevigata RLG00000003826
rosa_multiflora Rmu_sc0006266.1_g000025 Rmu_sc0007328.1_g000009
rosa_roxburghii Rroxscaffold_3G00257230
rosa_rugosa Rorug07G0052000
rosa_samantha Rh7AG175000 Rh7BG178200 Rh7DG177600
rosa_wichuraiana Rw7G015350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 309, 906
AccII CGCG 2 cut(s) 132, 433
AciI CCGC 3 cut(s) 433, 660, 716
AclWI GGATC 1 cut(s) 940
AcuI CTGAAG 2 cut(s) 603, 926
AcyI GRCGYC 3 cut(s) 5, 102, 337
AfiI CCNNNNNNNGG 2 cut(s) 176, 544
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 119, 253, 413, 694
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 2 cut(s) 169, 331
AluBI AGCT 6 cut(s) 214, 365, 611, 632, 790, 946
AluI AGCT 6 cut(s) 214, 365, 611, 632, 790, 946
Alw21I GWGCWC 2 cut(s) 216, 388
Alw26I GTCTC 2 cut(s) 112, 545
AlwI GGATC 1 cut(s) 940
AoxI GGCC 3 cut(s) 65, 535, 586
ApeKI GCWGC 2 cut(s) 557, 787
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AsiGI ACCGGT 1 cut(s) 26
AspLEI GCGC 2 cut(s) 310, 907
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 41, 629, 704
AsuII TTCGAA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 2 cut(s) 216, 477
BbsI GAAGAC 3 cut(s) 105, 682, 947
Bbv12I GWGCWC 2 cut(s) 216, 388
BbvI GCAGC 2 cut(s) 569, 799
BccI CCATC 2 cut(s) 608, 917
BceAI ACGGC 4 cut(s) 89, 151, 522, 793
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 2 cut(s) 171, 333
BciVI GTATCC 1 cut(s) 29
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 112, 545
BfaI CTAG 3 cut(s) 356, 510, 533
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 2 cut(s) 558, 788
BlsI GCNGC 2 cut(s) 559, 789
Bme1390I CCNGG 2 cut(s) 171, 333
Bme18I GGWCC 1 cut(s) 164
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 171, 333
BmsI GCATC 1 cut(s) 266
BpiI GAAGAC 3 cut(s) 105, 682, 947
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 4 cut(s) 94, 266, 315, 402
Bpu14I TTCGAA 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 611, 899
BsaBI GATNNNNATC 1 cut(s) 413
BsaHI GRCGYC 3 cut(s) 5, 102, 337
BsaJI CCNNGG 3 cut(s) 47, 217, 332
BsaWI WCCGGW 2 cut(s) 26, 161
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 313, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 544
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 901
Bse3DI GCAATG 2 cut(s) 123, 748
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 2 cut(s) 171, 333
BseDI CCNNGG 3 cut(s) 47, 217, 332
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 176, 544
BseMI GCAATG 2 cut(s) 123, 748
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 569, 799
Bsh1236I CGCG 2 cut(s) 132, 433
BshFI GGCC 3 cut(s) 67, 537, 588
BshTI ACCGGT 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 216, 388
BsiSI CCGG 2 cut(s) 27, 162
BslI CCNNNNNNNGG 2 cut(s) 176, 544
BsmAI GTCTC 2 cut(s) 112, 545
BsmBI CGTCTC 2 cut(s) 112, 545
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 3 cut(s) 67, 537, 588
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 216, 388, 477
Bsp143I GATC 2 cut(s) 520, 932
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 132
BspACI CCGC 3 cut(s) 433, 660, 716
BspANI GGCC 3 cut(s) 67, 537, 588
BspCNI CTCAG 1 cut(s) 856
BspFNI CGCG 2 cut(s) 132, 433
BspHI TCATGA 2 cut(s) 208, 885
BspPI GGATC 1 cut(s) 940
BspT104I TTCGAA 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 123, 748
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 901
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 47, 217, 332
BssMI GATC 2 cut(s) 520, 932
BssNI GRCGYC 3 cut(s) 5, 102, 337
BssT1I CCWWGG 2 cut(s) 47, 217
Bst2UI CCWGG 2 cut(s) 171, 333
Bst4CI ACNGT 1 cut(s) 371
BstACI GRCGYC 3 cut(s) 5, 102, 337
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 130, 630, 648
BstDEI CTNAG 3 cut(s) 496, 864, 963
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 174
BstFNI CGCG 2 cut(s) 132, 433
BstHHI GCGC 2 cut(s) 310, 907
BstKTI GATC 2 cut(s) 523, 935
BstMAI GTCTC 2 cut(s) 112, 545
BstMBI GATC 2 cut(s) 520, 932
BstMWI GCNNNNNNNGC 2 cut(s) 392, 715
BstNI CCWGG 2 cut(s) 171, 333
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 169, 331
BstUI CGCG 2 cut(s) 132, 433
BstV1I GCAGC 2 cut(s) 569, 799
BstV2I GAAGAC 3 cut(s) 105, 682, 947
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 3 cut(s) 67, 537, 588
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 751
BtuMI TCGCGA 1 cut(s) 132
Cac8I GCNNGC 3 cut(s) 130, 630, 648
CciI TCATGA 2 cut(s) 208, 885
CfoI GCGC 2 cut(s) 310, 907
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 2 cut(s) 110, 326
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 6 cut(s) 48, 142, 209, 622, 722, 886
DdeI CTNAG 3 cut(s) 496, 864, 963
DpnI GATC 2 cut(s) 522, 934
DpnII GATC 2 cut(s) 520, 932
DriI GACNNNNNGTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 47, 217
Eco147I AGGCCT 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 216, 477
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 603, 926
EcoICRI GAGCTC 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 169, 331
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 47, 217
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 216, 477
ErhI CCWWGG 2 cut(s) 47, 217
Esp3I CGTCTC 2 cut(s) 112, 545
FaeI CATG 6 cut(s) 51, 145, 212, 625, 725, 889
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 6 cut(s) 47, 141, 208, 621, 721, 885
FauI CCCGC 2 cut(s) 653, 723
FauNDI CATATG 1 cut(s) 909
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 2 cut(s) 558, 788
FriOI GRGCYC 2 cut(s) 216, 477
Fsp4HI GCNGC 2 cut(s) 558, 788
FspBI CTAG 3 cut(s) 356, 510, 533
FspI TGCGCA 2 cut(s) 309, 906
GlaI GCGC 2 cut(s) 309, 906
GluI GCNGC 2 cut(s) 558, 788
GsuI CTGGAG 4 cut(s) 94, 266, 315, 402
HaeIII GGCC 3 cut(s) 67, 537, 588
HapII CCGG 2 cut(s) 27, 162
HgaI GACGC 2 cut(s) 110, 326
HhaI GCGC 2 cut(s) 310, 907
Hin1I GRCGYC 3 cut(s) 5, 102, 337
Hin1II CATG 6 cut(s) 51, 145, 212, 625, 725, 889
Hin6I GCGC 2 cut(s) 308, 905
HinP1I GCGC 2 cut(s) 308, 905
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 2 cut(s) 504, 915
HpaII CCGG 2 cut(s) 27, 162
HphI GGTGA 3 cut(s) 41, 629, 704
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 5 cut(s) 262, 483, 520, 636, 873
Hpy188III TCNNGA 9 cut(s) 111, 131, 209, 245, 381, 510, 727, 886, 980
Hpy8I GTNNAC 1 cut(s) 676
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 578, 883
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 4 cut(s) 257, 440, 557, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 715
HpyF3I CTNAG 3 cut(s) 496, 864, 963
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 3 cut(s) 5, 102, 337
Hsp92II CATG 6 cut(s) 51, 145, 212, 625, 725, 889
HspAI GCGC 2 cut(s) 308, 905
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 2 cut(s) 520, 932
LmnI GCTCC 2 cut(s) 219, 383
Lsp1109I GCAGC 2 cut(s) 569, 799
LweI GCATC 1 cut(s) 266
MaeI CTAG 3 cut(s) 356, 510, 533
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 5 cut(s) 29, 319, 617, 701, 773
MalI GATC 2 cut(s) 522, 934
MboI GATC 2 cut(s) 520, 932
MboII GAAGA 6 cut(s) 3, 110, 325, 682, 932, 947
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 3 cut(s) 216, 388, 477
MluCI AATT 3 cut(s) 226, 294, 850
MmeI TCCRAC 4 cut(s) 70, 729, 836, 910
MnlI CCTC 8 cut(s) 31, 177, 229, 339, 393, 586, 618, 720
Mph1103I ATGCAT 1 cut(s) 259
MseI TTAA 3 cut(s) 297, 782, 1000
MspA1I CMGCKG 2 cut(s) 611, 660
MspI CCGG 2 cut(s) 27, 162
MspR9I CCNGG 2 cut(s) 171, 333
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 2 cut(s) 171, 333
MvnI CGCG 2 cut(s) 132, 433
MwoI GCNNNNNNNGC 2 cut(s) 392, 715
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 909
NdeII GATC 2 cut(s) 520, 932
NlaIII CATG 6 cut(s) 51, 145, 212, 625, 725, 889
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 4 cut(s) 29, 617, 701, 773
NruI TCGCGA 1 cut(s) 132
NsbI TGCGCA 2 cut(s) 309, 906
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 145
NspV TTCGAA 1 cut(s) 422
PagI TCATGA 2 cut(s) 208, 885
PceI AGGCCT 1 cut(s) 588
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 102
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 504, 915
PflFI GACNNNGTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 169
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 2 cut(s) 559, 789
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 169, 331
PspGI CCWGG 2 cut(s) 169, 331
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 932
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 611
RruI TCGCGA 1 cut(s) 132
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 297, 782, 1000
SatI GCNGC 2 cut(s) 558, 788
Sau3AI GATC 2 cut(s) 520, 932
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 171, 333
SduI GDGCHC 3 cut(s) 216, 388, 477
SfaNI GCATC 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 590, 878
SmoI CTYRAG 2 cut(s) 590, 878
Sse9I AATT 3 cut(s) 226, 294, 850
SseBI AGGCCT 1 cut(s) 588
SsiI CCGC 3 cut(s) 433, 660, 716
SspMI CTAG 3 cut(s) 356, 510, 533
SstI GAGCTC 1 cut(s) 216
StuI AGGCCT 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 169, 331
StyI CCWWGG 2 cut(s) 47, 217
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 690
TaqI TCGA 3 cut(s) 81, 422, 502
TasI AATT 3 cut(s) 226, 294, 850
TfiI GAWTC 2 cut(s) 504, 915
Tru1I TTAA 3 cut(s) 297, 782, 1000
Tru9I TTAA 3 cut(s) 297, 782, 1000
TseFI GTSAC 4 cut(s) 29, 617, 701, 773
TseI GCWGC 2 cut(s) 557, 787
Tsp45I GTSAC 4 cut(s) 29, 617, 701, 773
TspDTI ATGAA 5 cut(s) 57, 375, 710, 874, 902
TspGWI ACGGA 3 cut(s) 48, 561, 827
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 3 cut(s) 356, 510, 533
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.